Wall clock time and date at job start Tue Mar 31 2020 12:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38262 * 120.00038 * 2 1 4 4 C 1.38205 * 120.00475 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99884 * 0.02562 * 4 3 2 6 6 C 1.38220 * 120.00046 * 359.94758 * 5 4 3 7 7 C 1.38208 * 120.00408 * 179.97438 * 2 1 3 8 8 C 1.50701 * 119.99804 * 0.02562 * 7 2 1 9 9 C 1.52999 * 109.47402 * 85.02067 * 8 7 2 10 10 N 1.46499 * 109.47525 * 179.97438 * 9 8 7 11 11 C 1.34770 * 119.99951 * 180.02562 * 10 9 8 12 12 O 1.21340 * 120.00601 * 359.97438 * 11 10 9 13 13 C 1.49454 * 119.99699 * 179.97438 * 11 10 9 14 14 O 1.21355 * 120.00029 * 359.97438 * 13 11 10 15 15 N 1.34777 * 120.00199 * 179.97438 * 13 11 10 16 16 C 1.46499 * 120.00061 * 180.02562 * 15 13 11 17 17 C 1.53006 * 109.46704 * 179.97438 * 16 15 13 18 18 C 1.53005 * 109.46871 * 179.97438 * 17 16 15 19 19 C 1.50698 * 109.46935 * 180.02562 * 18 17 16 20 20 H 1.07992 * 120.00115 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99353 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00504 * 0.02562 * 21 19 18 23 23 Si 1.86810 * 119.99590 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46951 * 59.99918 * 23 21 19 25 25 H 1.48498 * 109.46955 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47006 * 300.00120 * 23 21 19 27 27 H 1.08997 * 109.47001 * 270.01980 * 1 2 3 28 28 H 1.08997 * 109.47350 * 30.02356 * 1 2 3 29 29 H 1.08998 * 109.46705 * 150.02574 * 1 2 3 30 30 H 1.08000 * 119.99741 * 359.97438 * 3 2 1 31 31 H 1.08005 * 120.00151 * 179.97438 * 4 3 2 32 32 H 1.08002 * 120.00347 * 179.97438 * 5 4 3 33 33 H 1.08000 * 119.99660 * 180.32192 * 6 5 4 34 34 H 1.09003 * 109.47025 * 205.01748 * 8 7 2 35 35 H 1.08991 * 109.47184 * 325.01693 * 8 7 2 36 36 H 1.08997 * 109.46738 * 300.00295 * 9 8 7 37 37 H 1.08999 * 109.46965 * 59.99689 * 9 8 7 38 38 H 0.97007 * 119.99755 * 359.97438 * 10 9 8 39 39 H 0.96999 * 119.99498 * 359.97438 * 15 13 11 40 40 H 1.08997 * 109.47516 * 299.99823 * 16 15 13 41 41 H 1.08999 * 109.47480 * 60.00009 * 16 15 13 42 42 H 1.08995 * 109.47386 * 299.99489 * 17 16 15 43 43 H 1.09000 * 109.47159 * 60.00405 * 17 16 15 44 44 H 1.09006 * 109.46974 * 300.00306 * 18 17 16 45 45 H 1.09005 * 109.47284 * 59.99628 * 18 17 16 46 46 H 0.97005 * 119.99859 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0002 0.0005 6 6 3.5806 -1.1969 0.0011 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 6 1.0817 -2.8815 -1.4365 10 7 0.3498 -4.1505 -1.4366 11 6 -0.0738 -4.6840 -2.5995 12 8 0.1506 -4.1131 -3.6464 13 6 -0.8200 -5.9789 -2.5996 14 8 -1.0440 -6.5502 -1.5526 15 7 -1.2441 -6.5123 -3.7624 16 6 -1.9760 -7.7813 -3.7624 17 6 -2.3394 -8.1604 -5.1995 18 6 -3.1033 -9.4861 -5.1996 19 6 -3.4607 -9.8598 -6.6151 20 1 -3.1723 -9.2160 -7.4327 21 6 -4.1559 -11.0237 -6.8661 22 7 -4.5075 -11.8075 -5.8703 23 14 -4.5996 -11.4867 -8.6207 24 1 -3.3587 -11.6296 -9.4237 25 1 -5.3408 -12.7734 -8.6207 26 1 -5.4524 -10.4246 -9.2122 27 1 -0.3633 0.0004 1.0276 28 1 -0.3634 0.8897 -0.5142 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6582 2.1327 -0.0004 31 1 4.1203 2.1329 0.0001 32 1 5.3517 0.0002 0.0005 33 1 4.1207 -2.1321 0.0064 34 1 2.0693 -3.2822 0.4356 35 1 0.5336 -2.3956 0.5893 36 1 0.4571 -2.1013 -1.8716 37 1 1.9929 -2.9879 -2.0253 38 1 0.1708 -4.6072 -0.5997 39 1 -1.0654 -6.0554 -4.5992 40 1 -1.3510 -8.5613 -3.3275 41 1 -2.8871 -7.6754 -3.1735 42 1 -2.9647 -7.3805 -5.6339 43 1 -1.4286 -8.2663 -5.7887 44 1 -2.4777 -10.2659 -4.7651 45 1 -4.0141 -9.3807 -4.6101 46 1 -4.9963 -12.6266 -6.0470 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322495681.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:28 Heat of formation + Delta-G solvation = -74.625273 kcal Electronic energy + Delta-G solvation = -24607.713172 eV Core-core repulsion = 20882.131547 eV Total energy + Delta-G solvation = -3725.581626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.68164 -40.00889 -38.53414 -36.16771 -35.47788 -33.60333 -33.26841 -32.56233 -31.24998 -29.29675 -27.44601 -27.09093 -25.13110 -23.55791 -22.43182 -22.19720 -21.12943 -20.77449 -20.05271 -18.37202 -17.07422 -16.68455 -16.53374 -16.32465 -15.91053 -15.74685 -15.18199 -15.07513 -14.98234 -14.45540 -14.22371 -14.08646 -13.73281 -13.58622 -13.35908 -13.33507 -12.81384 -12.62261 -12.30556 -12.13414 -11.96590 -11.90164 -11.79597 -11.72284 -11.34651 -11.30189 -10.89466 -10.76412 -10.63482 -9.90352 -9.80532 -9.50967 -9.39210 -9.21956 -9.14735 -8.99220 -8.98943 -8.37868 -6.02775 -4.05909 0.89669 0.97487 1.40840 2.32554 3.21632 3.31277 3.32487 3.37048 3.39308 3.63788 4.32713 4.33496 4.43640 4.48492 4.51240 4.55559 4.62459 4.71217 4.88250 5.06006 5.08678 5.21122 5.24514 5.33117 5.40416 5.43532 5.51322 5.58680 5.66413 5.68521 5.79326 5.93894 6.07134 6.07390 6.10820 6.22224 6.26121 6.53527 6.59424 6.68233 6.89390 6.94683 7.38932 7.61123 7.70639 7.72938 7.95313 8.03921 8.36663 9.00328 9.58431 11.08376 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.038095 B = 0.001579 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.818934 B =17724.882827 C =17850.135359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.078 4.078 3 C -0.120 4.120 4 C -0.118 4.118 5 C -0.125 4.125 6 C -0.109 4.109 7 C -0.083 4.083 8 C -0.095 4.095 9 C 0.122 3.878 10 N -0.705 5.705 11 C 0.508 3.492 12 O -0.519 6.519 13 C 0.500 3.500 14 O -0.527 6.527 15 N -0.691 5.691 16 C 0.113 3.887 17 C -0.123 4.123 18 C 0.025 3.975 19 C -0.524 4.524 20 H 0.056 0.944 21 C 0.058 3.942 22 N -0.894 5.894 23 Si 0.894 3.106 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.413 0.587 39 H 0.411 0.589 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.020 0.980 45 H 0.020 0.980 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.497 25.983 15.272 33.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.078 4.078 3 C -0.138 4.138 4 C -0.136 4.136 5 C -0.143 4.143 6 C -0.127 4.127 7 C -0.084 4.084 8 C -0.132 4.132 9 C -0.001 4.001 10 N -0.359 5.359 11 C 0.289 3.711 12 O -0.394 6.394 13 C 0.280 3.720 14 O -0.404 6.404 15 N -0.343 5.343 16 C -0.008 4.008 17 C -0.161 4.161 18 C -0.013 4.013 19 C -0.562 4.562 20 H 0.074 0.926 21 C -0.144 4.144 22 N -0.533 5.533 23 Si 0.722 3.278 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.202 1.202 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.250 0.750 39 H 0.247 0.753 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.038 0.962 45 H 0.038 0.962 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.386 25.796 15.288 33.703 hybrid contribution -0.166 -0.265 -0.933 0.984 sum 15.220 25.532 14.355 33.009 Atomic orbital electron populations 1.20920 0.91105 1.03311 1.02599 1.19818 0.96123 0.92599 0.99219 1.21050 0.94315 0.97494 1.00962 1.21162 0.94337 0.98149 0.99918 1.21141 0.99962 0.92489 1.00710 1.21085 0.93461 0.98383 0.99759 1.19476 0.93579 0.93795 1.01545 1.20796 1.01062 0.95026 0.96322 1.21453 0.96959 0.84882 0.96807 1.45757 1.56555 1.24035 1.09602 1.20344 0.80237 0.86245 0.84271 1.90767 1.55479 1.62037 1.31151 1.20002 0.81116 0.85823 0.85087 1.90760 1.56381 1.62101 1.31142 1.46075 1.54860 1.24595 1.08740 1.21850 0.95777 0.82730 1.00491 1.21933 1.00860 1.01331 0.91976 1.19032 0.95020 0.89809 0.97450 1.21167 1.35928 1.06424 0.92729 0.92613 1.25020 0.95837 0.96423 0.97100 1.69951 1.39273 1.13160 1.30885 0.86632 0.78585 0.77698 0.84926 1.20229 1.21268 1.20234 0.90911 0.91325 0.91002 0.86021 0.86097 0.86028 0.85872 0.89878 0.89713 0.90638 0.90699 0.75018 0.75295 0.91067 0.91075 0.92417 0.92420 0.96191 0.96191 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 9.22 36.00 0.33 -0.36 16 2 C -0.08 -0.54 5.88 -104.63 -0.62 -1.16 16 3 C -0.12 -0.80 9.70 -39.58 -0.38 -1.19 16 4 C -0.12 -0.75 10.05 -39.59 -0.40 -1.15 16 5 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 6 C -0.11 -0.74 9.68 -39.58 -0.38 -1.12 16 7 C -0.08 -0.58 5.13 -104.63 -0.54 -1.12 16 8 C -0.09 -0.56 4.76 -27.88 -0.13 -0.69 16 9 C 0.12 0.98 5.46 -4.04 -0.02 0.96 16 10 N -0.71 -6.76 5.55 -60.74 -0.34 -7.10 16 11 C 0.51 6.56 7.89 -11.59 -0.09 6.47 16 12 O -0.52 -7.77 16.48 5.51 0.09 -7.68 16 13 C 0.50 7.36 7.89 -11.58 -0.09 7.27 16 14 O -0.53 -8.77 16.48 5.49 0.09 -8.68 16 15 N -0.69 -10.31 5.55 -60.73 -0.34 -10.64 16 16 C 0.11 1.94 5.67 -4.04 -0.02 1.91 16 17 C -0.12 -2.38 5.27 -26.73 -0.14 -2.53 16 18 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 19 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 20 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 23 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 29 H 0.07 0.42 5.43 -51.93 -0.28 0.14 16 30 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 31 H 0.12 0.54 8.06 -52.48 -0.42 0.12 16 32 H 0.12 0.57 8.06 -52.49 -0.42 0.14 16 33 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.08 0.42 8.05 -51.93 -0.42 0.00 16 35 H 0.08 0.44 6.99 -51.93 -0.36 0.08 16 36 H 0.08 0.65 6.91 -51.93 -0.36 0.29 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.41 3.42 7.95 -40.82 -0.32 3.09 16 39 H 0.41 5.62 7.94 -40.82 -0.32 5.29 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 389.17 15.07 5.86 5.86 Total: -1.00 -32.68 389.17 -9.45 -42.14 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -7.11 Total: 2.30 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -3.43 Total: -6.78 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.06 Total: -43.60 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.18 Total: -16.36 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.68 -9.45 -42.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322495681.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.489 kcal (2) G-P(sol) polarization free energy of solvation -32.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds