Wall clock time and date at job start Tue Mar 31 2020 12:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38262 * 120.00038 * 2 1 4 4 C 1.38205 * 120.00475 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99884 * 0.02562 * 4 3 2 6 6 C 1.38220 * 120.00046 * 359.94758 * 5 4 3 7 7 C 1.38208 * 120.00408 * 179.97438 * 2 1 3 8 8 C 1.50701 * 119.99804 * 0.02562 * 7 2 1 9 9 C 1.52999 * 109.47402 * 85.02067 * 8 7 2 10 10 N 1.46499 * 109.47525 * 179.97438 * 9 8 7 11 11 C 1.34770 * 119.99951 * 180.02562 * 10 9 8 12 12 O 1.21340 * 120.00601 * 359.97438 * 11 10 9 13 13 C 1.49454 * 119.99699 * 179.97438 * 11 10 9 14 14 O 1.21355 * 120.00029 * 359.97438 * 13 11 10 15 15 N 1.34777 * 120.00199 * 179.97438 * 13 11 10 16 16 C 1.46499 * 120.00061 * 180.02562 * 15 13 11 17 17 C 1.53006 * 109.46704 * 179.97438 * 16 15 13 18 18 C 1.53005 * 109.46871 * 179.97438 * 17 16 15 19 19 C 1.50698 * 109.46935 * 180.02562 * 18 17 16 20 20 H 1.07992 * 120.00115 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99353 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00504 * 0.02562 * 21 19 18 23 23 Si 1.86810 * 119.99590 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46951 * 59.99918 * 23 21 19 25 25 H 1.48498 * 109.46955 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47006 * 300.00120 * 23 21 19 27 27 H 1.08997 * 109.47001 * 270.01980 * 1 2 3 28 28 H 1.08997 * 109.47350 * 30.02356 * 1 2 3 29 29 H 1.08998 * 109.46705 * 150.02574 * 1 2 3 30 30 H 1.08000 * 119.99741 * 359.97438 * 3 2 1 31 31 H 1.08005 * 120.00151 * 179.97438 * 4 3 2 32 32 H 1.08002 * 120.00347 * 179.97438 * 5 4 3 33 33 H 1.08000 * 119.99660 * 180.32192 * 6 5 4 34 34 H 1.09003 * 109.47025 * 205.01748 * 8 7 2 35 35 H 1.08991 * 109.47184 * 325.01693 * 8 7 2 36 36 H 1.08997 * 109.46738 * 300.00295 * 9 8 7 37 37 H 1.08999 * 109.46965 * 59.99689 * 9 8 7 38 38 H 0.97007 * 119.99755 * 359.97438 * 10 9 8 39 39 H 0.96999 * 119.99498 * 359.97438 * 15 13 11 40 40 H 1.08997 * 109.47516 * 299.99823 * 16 15 13 41 41 H 1.08999 * 109.47480 * 60.00009 * 16 15 13 42 42 H 1.08995 * 109.47386 * 299.99489 * 17 16 15 43 43 H 1.09000 * 109.47159 * 60.00405 * 17 16 15 44 44 H 1.09006 * 109.46974 * 300.00306 * 18 17 16 45 45 H 1.09005 * 109.47284 * 59.99628 * 18 17 16 46 46 H 0.97005 * 119.99859 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0002 0.0005 6 6 3.5806 -1.1969 0.0011 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 6 1.0817 -2.8815 -1.4365 10 7 0.3498 -4.1505 -1.4366 11 6 -0.0738 -4.6840 -2.5995 12 8 0.1506 -4.1131 -3.6464 13 6 -0.8200 -5.9789 -2.5996 14 8 -1.0440 -6.5502 -1.5526 15 7 -1.2441 -6.5123 -3.7624 16 6 -1.9760 -7.7813 -3.7624 17 6 -2.3394 -8.1604 -5.1995 18 6 -3.1033 -9.4861 -5.1996 19 6 -3.4607 -9.8598 -6.6151 20 1 -3.1723 -9.2160 -7.4327 21 6 -4.1559 -11.0237 -6.8661 22 7 -4.5075 -11.8075 -5.8703 23 14 -4.5996 -11.4867 -8.6207 24 1 -3.3587 -11.6296 -9.4237 25 1 -5.3408 -12.7734 -8.6207 26 1 -5.4524 -10.4246 -9.2122 27 1 -0.3633 0.0004 1.0276 28 1 -0.3634 0.8897 -0.5142 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6582 2.1327 -0.0004 31 1 4.1203 2.1329 0.0001 32 1 5.3517 0.0002 0.0005 33 1 4.1207 -2.1321 0.0064 34 1 2.0693 -3.2822 0.4356 35 1 0.5336 -2.3956 0.5893 36 1 0.4571 -2.1013 -1.8716 37 1 1.9929 -2.9879 -2.0253 38 1 0.1708 -4.6072 -0.5997 39 1 -1.0654 -6.0554 -4.5992 40 1 -1.3510 -8.5613 -3.3275 41 1 -2.8871 -7.6754 -3.1735 42 1 -2.9647 -7.3805 -5.6339 43 1 -1.4286 -8.2663 -5.7887 44 1 -2.4777 -10.2659 -4.7651 45 1 -4.0141 -9.3807 -4.6101 46 1 -4.9963 -12.6266 -6.0470 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322495681.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:27 Heat of formation + Delta-G solvation = -95.288455 kcal Electronic energy + Delta-G solvation = -24608.609195 eV Core-core repulsion = 20882.131547 eV Total energy + Delta-G solvation = -3726.477649 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.74966 -40.54394 -39.64832 -37.28207 -36.63970 -35.22623 -34.09713 -33.10796 -33.01643 -29.96286 -28.90413 -27.78451 -26.32369 -24.81655 -23.48277 -22.82415 -22.36343 -21.74426 -21.11370 -19.51030 -18.50613 -18.00696 -17.38496 -17.18921 -16.82182 -16.69373 -16.46241 -16.18398 -16.12555 -15.69404 -15.24855 -15.04085 -14.54928 -14.38968 -14.25585 -14.04092 -13.81764 -13.77371 -13.50966 -13.33595 -13.06180 -12.89791 -12.72621 -12.63596 -12.54526 -12.51193 -12.43120 -11.81519 -11.75856 -11.69108 -11.54861 -11.24610 -10.73251 -10.53538 -10.38435 -10.27480 -9.70114 -9.47166 -8.18676 -6.29693 0.29548 0.41019 0.49914 1.28268 1.42752 1.45148 1.53091 2.09511 2.42194 2.60214 2.85153 3.15154 3.39119 3.86730 3.87904 3.95712 4.07773 4.08687 4.12981 4.18776 4.26911 4.42601 4.53051 4.53783 4.58997 4.79030 4.80772 4.86711 4.91164 4.92129 4.94818 4.98788 5.13052 5.15498 5.21308 5.23240 5.35139 5.51968 5.60586 5.64672 5.71394 5.74541 5.84943 5.87193 6.14624 6.23519 6.32231 6.69198 6.86938 6.89872 7.39640 8.92835 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.038095 B = 0.001579 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.818934 B =17724.882827 C =17850.135359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.090 4.090 3 C -0.133 4.133 4 C -0.126 4.126 5 C -0.136 4.136 6 C -0.120 4.120 7 C -0.095 4.095 8 C -0.085 4.085 9 C 0.125 3.875 10 N -0.687 5.687 11 C 0.514 3.486 12 O -0.541 6.541 13 C 0.502 3.498 14 O -0.547 6.547 15 N -0.687 5.687 16 C 0.127 3.873 17 C -0.106 4.106 18 C 0.025 3.975 19 C -0.545 4.545 20 H 0.064 0.936 21 C 0.000 4.000 22 N -0.932 5.932 23 Si 0.965 3.035 24 H -0.267 1.267 25 H -0.285 1.285 26 H -0.267 1.267 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.422 0.578 39 H 0.419 0.581 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.066 0.934 44 H -0.003 1.003 45 H -0.003 1.003 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.222 27.300 14.921 35.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.091 4.091 3 C -0.151 4.151 4 C -0.144 4.144 5 C -0.154 4.154 6 C -0.138 4.138 7 C -0.096 4.096 8 C -0.123 4.123 9 C 0.002 3.998 10 N -0.340 5.340 11 C 0.294 3.706 12 O -0.419 6.419 13 C 0.282 3.718 14 O -0.425 6.425 15 N -0.339 5.339 16 C 0.004 3.996 17 C -0.144 4.144 18 C -0.013 4.013 19 C -0.583 4.583 20 H 0.082 0.918 21 C -0.198 4.198 22 N -0.572 5.572 23 Si 0.789 3.211 24 H -0.192 1.192 25 H -0.210 1.210 26 H -0.192 1.192 27 H 0.098 0.902 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.152 0.848 31 H 0.155 0.845 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.260 0.740 39 H 0.256 0.744 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.015 0.985 45 H 0.015 0.985 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.131 27.145 14.960 34.941 hybrid contribution -0.351 -0.622 -0.748 1.035 sum 15.780 26.523 14.212 33.977 Atomic orbital electron populations 1.20929 0.90401 1.03383 1.03098 1.20058 0.96849 0.92855 0.99293 1.21311 0.94747 0.98044 1.01012 1.21449 0.94509 0.98954 0.99486 1.21418 1.00926 0.92508 1.00540 1.21329 0.93664 0.99106 0.99728 1.19611 0.93854 0.94107 1.02014 1.20734 1.01640 0.94994 0.94894 1.21534 0.96289 0.83695 0.98268 1.45735 1.55174 1.24173 1.08935 1.19943 0.80316 0.85464 0.84867 1.90766 1.56695 1.62404 1.32020 1.20316 0.80673 0.86292 0.84470 1.90752 1.57141 1.62832 1.31768 1.45892 1.54677 1.23867 1.09468 1.21482 0.95727 0.83678 0.98704 1.21646 1.00565 0.98507 0.93712 1.18936 0.94316 0.92156 0.95895 1.21658 1.35796 1.06742 0.94083 0.91795 1.25967 0.95762 0.96455 1.01619 1.70089 1.40148 1.13677 1.33294 0.85505 0.78615 0.77468 0.79471 1.19200 1.21035 1.19202 0.90160 0.90894 0.91285 0.84807 0.84490 0.84557 0.84809 0.88727 0.88770 0.91024 0.91223 0.74039 0.74362 0.91672 0.91654 0.91469 0.91496 0.98498 0.98484 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.22 71.23 0.66 -0.58 16 2 C -0.09 -1.17 5.88 -19.87 -0.12 -1.29 16 3 C -0.13 -1.64 9.70 22.27 0.22 -1.42 16 4 C -0.13 -1.46 10.05 22.27 0.22 -1.24 16 5 C -0.14 -1.60 10.05 22.27 0.22 -1.37 16 6 C -0.12 -1.49 9.68 22.27 0.22 -1.28 16 7 C -0.10 -1.22 5.13 -19.87 -0.10 -1.32 16 8 C -0.09 -0.87 4.76 29.85 0.14 -0.73 16 9 C 0.12 1.83 5.46 86.38 0.47 2.30 16 10 N -0.69 -12.14 5.55 -464.43 -2.58 -14.71 16 11 C 0.51 12.66 7.89 87.27 0.69 13.35 16 12 O -0.54 -15.62 16.48 -3.21 -0.05 -15.67 16 13 C 0.50 14.30 7.89 87.27 0.69 14.99 16 14 O -0.55 -17.75 16.48 -3.26 -0.05 -17.80 16 15 N -0.69 -19.83 5.55 -464.40 -2.58 -22.41 16 16 C 0.13 4.30 5.67 86.38 0.49 4.79 16 17 C -0.11 -4.07 5.27 30.60 0.16 -3.91 16 18 C 0.02 1.26 4.97 29.85 0.15 1.41 16 19 C -0.54 -30.33 9.11 25.60 0.23 -30.10 16 20 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 21 C 0.00 0.00 5.46 84.66 0.46 0.46 16 22 N -0.93 -56.28 13.29 21.45 0.28 -55.99 16 23 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 29 H 0.07 0.72 5.43 -2.39 -0.01 0.71 16 30 H 0.13 1.19 8.06 -2.91 -0.02 1.17 16 31 H 0.14 1.03 8.06 -2.91 -0.02 1.00 16 32 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 33 H 0.13 1.26 8.06 -2.91 -0.02 1.23 16 34 H 0.09 0.76 8.05 -2.39 -0.02 0.74 16 35 H 0.09 0.80 6.99 -2.39 -0.02 0.78 16 36 H 0.07 1.15 6.91 -2.39 -0.02 1.14 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.42 6.24 7.95 -92.70 -0.74 5.50 16 39 H 0.42 10.90 7.94 -92.71 -0.74 10.17 16 40 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 45 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 46 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 Total: -1.00 -69.47 389.17 1.37 -68.10 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -0.48 Total: 18.64 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 4.80 Total: -5.95 kcal Atomic # 7 Polarization: -88.24 SS G_CDS: -4.87 Total: -93.11 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -0.11 Total: -33.47 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -69.47 1.37 -68.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322495681.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.192 kcal (2) G-P(sol) polarization free energy of solvation -69.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds