Wall clock time and date at job start Tue Mar 31 2020 12:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38255 * 119.99856 * 2 1 4 4 C 1.38216 * 120.00028 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00160 * 0.02877 * 4 3 2 6 6 C 1.38222 * 119.99551 * 359.76035 * 5 4 3 7 7 C 1.50697 * 119.99704 * 180.25433 * 6 5 4 8 8 H 1.09003 * 109.46678 * 145.21268 * 7 6 5 9 9 C 1.52996 * 109.47503 * 265.21217 * 7 6 5 10 10 N 1.46501 * 109.47328 * 25.21641 * 7 6 5 11 11 C 1.34774 * 120.00471 * 154.99737 * 10 7 6 12 12 O 1.21352 * 119.99568 * 359.97438 * 11 10 7 13 13 C 1.49445 * 120.00127 * 179.97438 * 11 10 7 14 14 O 1.21352 * 120.00305 * 0.02562 * 13 11 10 15 15 N 1.34779 * 119.99741 * 179.97438 * 13 11 10 16 16 C 1.46503 * 119.99658 * 179.97438 * 15 13 11 17 17 C 1.53001 * 109.47045 * 180.02562 * 16 15 13 18 18 C 1.50705 * 109.47341 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99667 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00062 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99975 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00193 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46907 * 90.00021 * 22 20 18 24 24 H 1.48499 * 109.47241 * 210.00379 * 22 20 18 25 25 H 1.48502 * 109.47231 * 330.00294 * 22 20 18 26 26 C 1.38213 * 120.00222 * 180.02562 * 2 1 3 27 27 C 1.50706 * 119.99863 * 359.97438 * 26 2 1 28 28 H 1.09001 * 109.46896 * 269.97460 * 1 2 3 29 29 H 1.08994 * 109.47489 * 29.97645 * 1 2 3 30 30 H 1.09002 * 109.46869 * 149.98274 * 1 2 3 31 31 H 1.08004 * 120.00139 * 0.02562 * 3 2 1 32 32 H 1.08002 * 119.99831 * 179.97438 * 4 3 2 33 33 H 1.07997 * 120.00273 * 179.97438 * 5 4 3 34 34 H 1.09002 * 109.46988 * 59.99778 * 9 7 6 35 35 H 1.08997 * 109.47567 * 180.02562 * 9 7 6 36 36 H 1.09002 * 109.46926 * 300.00000 * 9 7 6 37 37 H 0.97006 * 119.99563 * 334.99598 * 10 7 6 38 38 H 0.96996 * 120.00405 * 0.02562 * 15 13 11 39 39 H 1.08997 * 109.47526 * 299.99766 * 16 15 13 40 40 H 1.09002 * 109.46998 * 60.00541 * 16 15 13 41 41 H 1.09006 * 109.47536 * 300.00128 * 17 16 15 42 42 H 1.09000 * 109.47354 * 59.99905 * 17 16 15 43 43 H 0.97003 * 119.99964 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.46953 * 89.99941 * 27 26 2 45 45 H 1.09000 * 109.47318 * 209.99539 * 27 26 2 46 46 H 1.09000 * 109.47161 * 330.00169 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2718 0.0001 0.0005 6 6 3.5807 -1.1969 0.0049 7 6 4.3342 -2.5020 0.0106 8 1 3.7845 -3.2363 0.5996 9 6 4.4859 -3.0097 -1.4247 10 7 5.6602 -2.2977 0.5990 11 6 6.3104 -3.3308 1.1704 12 8 5.7972 -4.4301 1.1978 13 6 7.6633 -3.1225 1.7701 14 8 8.1763 -2.0230 1.7431 15 7 8.3133 -4.1555 2.3419 16 6 9.6397 -3.9514 2.9293 17 6 10.1510 -5.2731 3.5060 18 6 11.5153 -5.0631 4.1108 19 1 11.9721 -4.0848 4.0860 20 6 12.1806 -6.1200 4.6949 21 7 13.3709 -5.9366 5.2232 22 14 11.3907 -7.8123 4.7372 23 1 11.7738 -8.5679 3.5176 24 1 11.8567 -8.5461 5.9411 25 1 9.9135 -7.6680 4.7865 26 6 2.1981 -1.1969 -0.0005 27 6 1.4446 -2.5021 -0.0005 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8901 -0.5134 30 1 -0.3633 -0.8899 -0.5141 31 1 1.6582 2.1327 0.0004 32 1 4.1204 2.1327 0.0001 33 1 5.3518 0.0001 0.0005 34 1 5.0354 -2.2754 -2.0136 35 1 5.0305 -3.9539 -1.4205 36 1 3.4993 -3.1618 -1.8624 37 1 6.0702 -1.4188 0.5774 38 1 7.9031 -5.0342 2.3638 39 1 10.3278 -3.6008 2.1601 40 1 9.5746 -3.2087 3.7245 41 1 9.4631 -5.6243 4.2752 42 1 10.2162 -6.0155 2.7106 43 1 13.8388 -6.6801 5.6344 44 1 1.2626 -2.8165 -1.0282 45 1 2.0339 -3.2619 0.5128 46 1 0.4924 -2.3719 0.5137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322964718.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:09 Heat of formation + Delta-G solvation = -60.771055 kcal Electronic energy + Delta-G solvation = -25725.753451 eV Core-core repulsion = 22000.772589 eV Total energy + Delta-G solvation = -3724.980862 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.90952 -40.00248 -38.39890 -36.22413 -35.15414 -33.79185 -32.88072 -32.50926 -30.32327 -30.04863 -28.02590 -26.71317 -26.07284 -24.46145 -23.10772 -21.48022 -20.90168 -20.55539 -20.06167 -18.45469 -17.15169 -16.83689 -16.54756 -15.93820 -15.84299 -15.38456 -14.99746 -14.83918 -14.61591 -14.42295 -14.17986 -13.82231 -13.70352 -13.39178 -13.27427 -13.23160 -12.96498 -12.85916 -12.61919 -12.46547 -12.41875 -12.06427 -11.85218 -11.58792 -11.48779 -11.26340 -11.25244 -10.96432 -10.44818 -10.30990 -9.96381 -9.54741 -9.46672 -9.31516 -8.96250 -8.89180 -8.78128 -8.61626 -6.12643 -4.13378 0.95582 1.00294 1.52861 2.43757 3.26347 3.31911 3.34348 3.36203 3.36451 3.77936 4.13760 4.37459 4.40039 4.50627 4.60739 4.65159 4.76872 4.89587 4.91920 4.96090 5.17918 5.20413 5.21285 5.25865 5.28734 5.39155 5.42000 5.47013 5.58251 5.71929 5.80173 5.90690 5.96335 5.98892 6.09911 6.15038 6.20329 6.31135 6.46583 6.50446 6.63946 6.93347 7.08971 7.18041 7.54633 7.62164 7.83690 8.19985 8.41457 8.90588 9.47271 11.00053 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.027744 B = 0.002174 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.990059 B =12875.690763 C =13389.411447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.118 4.118 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.089 4.089 7 C 0.180 3.820 8 H 0.105 0.895 9 C -0.159 4.159 10 N -0.702 5.702 11 C 0.511 3.489 12 O -0.520 6.520 13 C 0.499 3.501 14 O -0.529 6.529 15 N -0.690 5.690 16 C 0.127 3.873 17 C -0.024 4.024 18 C -0.524 4.524 19 H 0.077 0.923 20 C 0.070 3.930 21 N -0.897 5.897 22 Si 0.881 3.119 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.265 1.265 26 C -0.074 4.074 27 C -0.124 4.124 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.411 0.589 38 H 0.409 0.591 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.025 0.975 42 H 0.020 0.980 43 H 0.265 0.735 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.601 11.314 -13.942 32.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.084 4.084 3 C -0.136 4.136 4 C -0.132 4.132 5 C -0.135 4.135 6 C -0.089 4.089 7 C 0.076 3.924 8 H 0.122 0.878 9 C -0.217 4.217 10 N -0.357 5.357 11 C 0.292 3.708 12 O -0.396 6.396 13 C 0.278 3.722 14 O -0.406 6.406 15 N -0.341 5.341 16 C 0.005 3.995 17 C -0.062 4.062 18 C -0.562 4.562 19 H 0.095 0.905 20 C -0.132 4.132 21 N -0.535 5.535 22 Si 0.708 3.292 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.190 1.190 26 C -0.075 4.075 27 C -0.181 4.181 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.250 0.750 38 H 0.244 0.756 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.043 0.957 42 H 0.039 0.961 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -27.419 11.199 -13.823 32.684 hybrid contribution -0.115 -0.789 0.106 0.804 sum -27.534 10.410 -13.716 32.475 Atomic orbital electron populations 1.20829 0.91109 1.02881 1.02443 1.19749 0.96034 0.92457 1.00177 1.21048 0.94270 0.97463 1.00779 1.21101 0.94280 0.97945 0.99904 1.20904 0.99834 0.92011 1.00743 1.19690 0.93323 0.94278 1.01628 1.19919 0.82289 0.94700 0.95476 0.87778 1.22157 1.02845 1.02042 0.94637 1.45993 1.18676 1.13188 1.57878 1.20435 0.86811 0.84756 0.78822 1.90744 1.67798 1.24012 1.57005 1.19945 0.86016 0.85609 0.80633 1.90745 1.67923 1.24081 1.57885 1.46203 1.20199 1.12067 1.55651 1.21720 0.79545 1.00837 0.97356 1.19828 0.97860 0.92171 0.96295 1.20872 0.99655 0.98176 1.37520 0.90536 1.24990 0.94643 0.99016 0.94579 1.69901 1.13163 1.32172 1.38285 0.86764 0.80298 0.84325 0.77810 1.20155 1.21227 1.18952 1.19482 0.92403 0.95239 1.00350 1.20959 1.00263 0.94211 1.02638 0.91071 0.91532 0.91203 0.86006 0.85735 0.85954 0.91953 0.91286 0.91128 0.74983 0.75555 0.91248 0.91221 0.95712 0.96144 0.92505 0.90767 0.90921 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 9.19 36.01 0.33 -0.28 16 2 C -0.08 -0.64 5.88 -104.62 -0.62 -1.26 16 3 C -0.12 -0.89 9.70 -39.58 -0.38 -1.27 16 4 C -0.11 -0.91 10.05 -39.58 -0.40 -1.31 16 5 C -0.12 -1.04 9.23 -39.58 -0.37 -1.40 16 6 C -0.09 -0.81 5.06 -104.62 -0.53 -1.34 16 7 C 0.18 1.77 2.28 -69.08 -0.16 1.61 16 8 H 0.10 1.09 5.60 -51.93 -0.29 0.80 16 9 C -0.16 -1.39 9.47 37.16 0.35 -1.04 16 10 N -0.70 -8.12 4.99 -55.37 -0.28 -8.39 16 11 C 0.51 7.35 7.85 -11.59 -0.09 7.26 16 12 O -0.52 -8.23 16.14 5.49 0.09 -8.14 16 13 C 0.50 8.27 7.89 -11.59 -0.09 8.18 16 14 O -0.53 -9.75 16.48 5.49 0.09 -9.66 16 15 N -0.69 -11.87 5.55 -60.73 -0.34 -12.21 16 16 C 0.13 2.54 5.61 -4.04 -0.02 2.52 16 17 C -0.02 -0.54 4.16 -27.88 -0.12 -0.66 16 18 C -0.52 -14.54 9.66 -34.44 -0.33 -14.87 16 19 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 20 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 21 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 22 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 25 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 26 C -0.07 -0.61 5.88 -104.62 -0.62 -1.23 16 27 C -0.12 -0.80 8.57 36.01 0.31 -0.49 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 30 H 0.07 0.31 6.70 -51.93 -0.35 -0.03 16 31 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 32 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.12 1.00 6.08 -52.49 -0.32 0.68 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.50 7.92 -51.93 -0.41 0.09 16 37 H 0.41 4.44 5.69 -40.82 -0.23 4.20 16 38 H 0.41 6.51 7.94 -40.82 -0.32 6.18 16 39 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 40 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 41 H 0.02 0.56 7.20 -51.93 -0.37 0.18 16 42 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.51 6.02 -51.93 -0.31 0.19 16 46 H 0.07 0.38 6.70 -51.93 -0.35 0.03 16 LS Contribution 378.07 15.07 5.70 5.70 Total: -1.00 -32.17 378.07 -8.20 -40.36 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.74 Total: 5.94 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -2.82 Total: -3.68 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: 0.16 Total: -46.99 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: 0.18 Total: -17.80 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.17 -8.20 -40.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322964718.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.407 kcal (2) G-P(sol) polarization free energy of solvation -32.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds