Wall clock time and date at job start Tue Mar 31 2020 12:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38255 * 119.99856 * 2 1 4 4 C 1.38216 * 120.00028 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00160 * 0.02877 * 4 3 2 6 6 C 1.38222 * 119.99551 * 359.76035 * 5 4 3 7 7 C 1.50697 * 119.99704 * 180.25433 * 6 5 4 8 8 H 1.09003 * 109.46678 * 145.21268 * 7 6 5 9 9 C 1.52996 * 109.47503 * 265.21217 * 7 6 5 10 10 N 1.46501 * 109.47328 * 25.21641 * 7 6 5 11 11 C 1.34774 * 120.00471 * 154.99737 * 10 7 6 12 12 O 1.21352 * 119.99568 * 359.97438 * 11 10 7 13 13 C 1.49445 * 120.00127 * 179.97438 * 11 10 7 14 14 O 1.21352 * 120.00305 * 0.02562 * 13 11 10 15 15 N 1.34779 * 119.99741 * 179.97438 * 13 11 10 16 16 C 1.46503 * 119.99658 * 179.97438 * 15 13 11 17 17 C 1.53001 * 109.47045 * 180.02562 * 16 15 13 18 18 C 1.50705 * 109.47341 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99667 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00062 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99975 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00193 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46907 * 90.00021 * 22 20 18 24 24 H 1.48499 * 109.47241 * 210.00379 * 22 20 18 25 25 H 1.48502 * 109.47231 * 330.00294 * 22 20 18 26 26 C 1.38213 * 120.00222 * 180.02562 * 2 1 3 27 27 C 1.50706 * 119.99863 * 359.97438 * 26 2 1 28 28 H 1.09001 * 109.46896 * 269.97460 * 1 2 3 29 29 H 1.08994 * 109.47489 * 29.97645 * 1 2 3 30 30 H 1.09002 * 109.46869 * 149.98274 * 1 2 3 31 31 H 1.08004 * 120.00139 * 0.02562 * 3 2 1 32 32 H 1.08002 * 119.99831 * 179.97438 * 4 3 2 33 33 H 1.07997 * 120.00273 * 179.97438 * 5 4 3 34 34 H 1.09002 * 109.46988 * 59.99778 * 9 7 6 35 35 H 1.08997 * 109.47567 * 180.02562 * 9 7 6 36 36 H 1.09002 * 109.46926 * 300.00000 * 9 7 6 37 37 H 0.97006 * 119.99563 * 334.99598 * 10 7 6 38 38 H 0.96996 * 120.00405 * 0.02562 * 15 13 11 39 39 H 1.08997 * 109.47526 * 299.99766 * 16 15 13 40 40 H 1.09002 * 109.46998 * 60.00541 * 16 15 13 41 41 H 1.09006 * 109.47536 * 300.00128 * 17 16 15 42 42 H 1.09000 * 109.47354 * 59.99905 * 17 16 15 43 43 H 0.97003 * 119.99964 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.46953 * 89.99941 * 27 26 2 45 45 H 1.09000 * 109.47318 * 209.99539 * 27 26 2 46 46 H 1.09000 * 109.47161 * 330.00169 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2718 0.0001 0.0005 6 6 3.5807 -1.1969 0.0049 7 6 4.3342 -2.5020 0.0106 8 1 3.7845 -3.2363 0.5996 9 6 4.4859 -3.0097 -1.4247 10 7 5.6602 -2.2977 0.5990 11 6 6.3104 -3.3308 1.1704 12 8 5.7972 -4.4301 1.1978 13 6 7.6633 -3.1225 1.7701 14 8 8.1763 -2.0230 1.7431 15 7 8.3133 -4.1555 2.3419 16 6 9.6397 -3.9514 2.9293 17 6 10.1510 -5.2731 3.5060 18 6 11.5153 -5.0631 4.1108 19 1 11.9721 -4.0848 4.0860 20 6 12.1806 -6.1200 4.6949 21 7 13.3709 -5.9366 5.2232 22 14 11.3907 -7.8123 4.7372 23 1 11.7738 -8.5679 3.5176 24 1 11.8567 -8.5461 5.9411 25 1 9.9135 -7.6680 4.7865 26 6 2.1981 -1.1969 -0.0005 27 6 1.4446 -2.5021 -0.0005 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8901 -0.5134 30 1 -0.3633 -0.8899 -0.5141 31 1 1.6582 2.1327 0.0004 32 1 4.1204 2.1327 0.0001 33 1 5.3518 0.0001 0.0005 34 1 5.0354 -2.2754 -2.0136 35 1 5.0305 -3.9539 -1.4205 36 1 3.4993 -3.1618 -1.8624 37 1 6.0702 -1.4188 0.5774 38 1 7.9031 -5.0342 2.3638 39 1 10.3278 -3.6008 2.1601 40 1 9.5746 -3.2087 3.7245 41 1 9.4631 -5.6243 4.2752 42 1 10.2162 -6.0155 2.7106 43 1 13.8388 -6.6801 5.6344 44 1 1.2626 -2.8165 -1.0282 45 1 2.0339 -3.2619 0.5128 46 1 0.4924 -2.3719 0.5137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322964718.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:07 Heat of formation + Delta-G solvation = -81.746026 kcal Electronic energy + Delta-G solvation = -25726.662994 eV Core-core repulsion = 22000.772589 eV Total energy + Delta-G solvation = -3725.890405 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.94741 -40.86722 -39.61644 -37.24692 -36.62921 -34.83470 -34.33798 -33.34433 -32.13840 -30.80024 -28.56424 -27.66668 -27.22086 -25.67024 -24.17929 -22.69426 -22.15908 -21.52642 -20.96326 -19.67379 -19.02940 -18.03207 -17.40630 -17.11716 -16.88832 -16.28735 -16.15908 -16.08451 -15.90378 -15.47385 -15.26228 -15.04218 -14.73131 -14.59668 -14.41242 -13.90048 -13.82029 -13.67698 -13.41647 -13.40128 -13.14435 -13.07658 -12.89133 -12.83054 -12.63250 -12.46242 -12.23571 -12.20265 -11.80263 -11.78818 -11.59826 -11.51879 -10.79543 -10.76287 -10.50118 -10.26506 -9.58620 -9.46039 -8.30649 -6.37511 0.26895 0.34600 0.41741 1.26024 1.39341 1.40969 1.52179 2.07662 2.35944 2.58071 2.75494 3.04438 3.36182 3.46534 3.84420 3.94513 4.06376 4.16388 4.18452 4.25190 4.33829 4.37681 4.46333 4.57970 4.71234 4.72028 4.76421 4.79254 4.82738 4.87778 4.94615 4.96845 4.99720 5.09935 5.15657 5.27761 5.28410 5.36157 5.36924 5.54701 5.56494 5.58527 5.70679 5.87087 6.08513 6.19647 6.30580 6.64654 6.71343 6.88586 7.27020 8.85525 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.027744 B = 0.002174 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.990059 B =12875.690763 C =13389.411447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.092 4.092 3 C -0.123 4.123 4 C -0.124 4.124 5 C -0.132 4.132 6 C -0.101 4.101 7 C 0.181 3.819 8 H 0.099 0.901 9 C -0.154 4.154 10 N -0.688 5.688 11 C 0.518 3.482 12 O -0.534 6.534 13 C 0.500 3.500 14 O -0.549 6.549 15 N -0.686 5.686 16 C 0.142 3.858 17 C -0.017 4.017 18 C -0.536 4.536 19 H 0.036 0.964 20 C 0.007 3.993 21 N -0.947 5.947 22 Si 0.953 3.047 23 H -0.266 1.266 24 H -0.286 1.286 25 H -0.241 1.241 26 C -0.083 4.083 27 C -0.124 4.124 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.123 0.877 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.415 0.585 38 H 0.418 0.582 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.036 0.964 42 H 0.035 0.965 43 H 0.268 0.732 44 H 0.086 0.914 45 H 0.065 0.935 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.659 10.714 -14.963 35.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.092 4.092 3 C -0.141 4.141 4 C -0.142 4.142 5 C -0.151 4.151 6 C -0.101 4.101 7 C 0.078 3.922 8 H 0.117 0.883 9 C -0.212 4.212 10 N -0.343 5.343 11 C 0.298 3.702 12 O -0.411 6.411 13 C 0.281 3.719 14 O -0.428 6.428 15 N -0.338 5.338 16 C 0.019 3.981 17 C -0.055 4.055 18 C -0.574 4.574 19 H 0.054 0.946 20 C -0.191 4.191 21 N -0.587 5.587 22 Si 0.776 3.224 23 H -0.191 1.191 24 H -0.211 1.211 25 H -0.164 1.164 26 C -0.084 4.084 27 C -0.180 4.180 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.159 0.841 32 H 0.156 0.844 33 H 0.141 0.859 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.255 0.745 38 H 0.255 0.745 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.077 0.923 44 H 0.104 0.896 45 H 0.084 0.916 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -30.519 10.626 -14.872 35.574 hybrid contribution 0.830 -0.434 0.401 1.019 sum -29.689 10.192 -14.471 34.564 Atomic orbital electron populations 1.20875 0.89386 1.03868 1.03026 1.20089 0.97415 0.92227 0.99458 1.21359 0.94262 0.98413 1.00065 1.21341 0.94835 0.98230 0.99746 1.21030 1.00053 0.92485 1.01509 1.19672 0.93826 0.93763 1.02887 1.20036 0.81044 0.95292 0.95824 0.88281 1.22121 1.03801 1.01286 0.93976 1.46029 1.19100 1.12630 1.56534 1.19916 0.85880 0.85157 0.79198 1.90744 1.67826 1.24543 1.57982 1.20328 0.86740 0.84937 0.79942 1.90737 1.68653 1.24866 1.58513 1.45970 1.19219 1.12859 1.55764 1.21292 0.80853 0.99168 0.96815 1.19697 0.95272 0.93810 0.96719 1.21193 1.01883 0.96626 1.37723 0.94596 1.26004 0.95114 1.03891 0.94076 1.70059 1.15108 1.33775 1.39752 0.85619 0.80465 0.78267 0.78055 1.19051 1.21148 1.16421 1.19729 0.92193 0.96347 1.00112 1.20997 1.00429 0.93134 1.03472 0.90572 0.90471 0.90375 0.84129 0.84377 0.85940 0.91726 0.92533 0.89296 0.74509 0.74493 0.92185 0.92259 0.94606 0.94682 0.92313 0.89563 0.91623 0.89936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.19 71.24 0.65 -0.26 16 2 C -0.09 -1.23 5.88 -19.87 -0.12 -1.34 16 3 C -0.12 -1.63 9.70 22.27 0.22 -1.42 16 4 C -0.12 -1.82 10.05 22.27 0.22 -1.60 16 5 C -0.13 -2.25 9.23 22.27 0.21 -2.04 16 6 C -0.10 -1.74 5.06 -19.87 -0.10 -1.84 16 7 C 0.18 3.37 2.28 44.24 0.10 3.47 16 8 H 0.10 1.98 5.60 -2.39 -0.01 1.97 16 9 C -0.15 -2.49 9.47 71.98 0.68 -1.81 16 10 N -0.69 -15.37 4.99 -447.44 -2.23 -17.61 16 11 C 0.52 14.44 7.85 87.27 0.69 15.12 16 12 O -0.53 -16.22 16.14 -3.25 -0.05 -16.27 16 13 C 0.50 16.24 7.89 87.27 0.69 16.93 16 14 O -0.55 -20.14 16.48 -3.25 -0.05 -20.19 16 15 N -0.69 -22.91 5.55 -464.41 -2.58 -25.48 16 16 C 0.14 5.64 5.61 86.38 0.48 6.13 16 17 C -0.02 -0.77 4.16 29.85 0.12 -0.64 16 18 C -0.54 -30.24 9.66 25.60 0.25 -29.99 16 19 H 0.04 2.24 7.99 -2.91 -0.02 2.22 16 20 C 0.01 0.38 5.47 84.65 0.46 0.85 16 21 N -0.95 -58.68 13.96 21.45 0.30 -58.38 16 22 Si 0.95 42.82 27.47 68.60 1.88 44.70 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 24 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 25 H -0.24 -9.83 6.54 99.48 0.65 -9.18 16 26 C -0.08 -1.24 5.88 -19.86 -0.12 -1.36 16 27 C -0.12 -1.36 8.57 71.24 0.61 -0.75 16 28 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.08 0.46 8.08 -2.39 -0.02 0.44 16 30 H 0.08 0.50 6.70 -2.39 -0.02 0.48 16 31 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 32 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 33 H 0.12 1.95 6.08 -2.91 -0.02 1.93 16 34 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.09 1.10 7.92 -2.39 -0.02 1.08 16 37 H 0.42 8.72 5.69 -92.70 -0.53 8.20 16 38 H 0.42 12.55 7.94 -92.71 -0.74 11.81 16 39 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.04 1.53 7.20 -2.38 -0.02 1.51 16 42 H 0.03 1.47 7.57 -2.39 -0.02 1.46 16 43 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 44 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.06 0.82 6.02 -2.39 -0.01 0.81 16 46 H 0.08 0.70 6.70 -2.39 -0.02 0.69 16 Total: -1.00 -69.52 378.07 2.01 -67.51 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: -0.31 Total: 26.27 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 5.05 Total: -0.56 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -4.51 Total: -101.47 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -0.11 Total: -36.46 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.88 Total: 44.70 kcal Total: -69.52 2.01 -67.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322964718.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.237 kcal (2) G-P(sol) polarization free energy of solvation -69.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds