Wall clock time and date at job start Tue Mar 31 2020 12:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38256 * 120.00175 * 2 1 4 4 C 1.38217 * 119.99898 * 179.69627 * 3 2 1 5 5 C 1.38254 * 119.99970 * 0.02562 * 4 3 2 6 6 C 1.38209 * 120.00472 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00526 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47385 * 212.56704 * 7 6 5 9 9 C 1.52998 * 109.47357 * 92.56209 * 7 6 5 10 10 N 1.46504 * 109.47018 * 332.56521 * 7 6 5 11 11 C 1.34773 * 119.99738 * 207.16472 * 10 7 6 12 12 O 1.21348 * 120.00468 * 359.97438 * 11 10 7 13 13 C 1.49452 * 119.99662 * 179.97438 * 11 10 7 14 14 O 1.21348 * 120.00277 * 359.97438 * 13 11 10 15 15 N 1.34776 * 120.00214 * 179.97438 * 13 11 10 16 16 C 1.46504 * 120.00290 * 180.02562 * 15 13 11 17 17 C 1.53001 * 109.46921 * 179.97438 * 16 15 13 18 18 C 1.50702 * 109.46704 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00304 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99709 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99772 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00151 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47397 * 89.99503 * 22 20 18 24 24 H 1.48504 * 109.46940 * 209.99967 * 22 20 18 25 25 H 1.48506 * 109.47030 * 329.99475 * 22 20 18 26 26 C 1.38219 * 119.99565 * 179.72164 * 2 1 3 27 27 C 1.50701 * 120.00180 * 0.28019 * 26 2 1 28 28 H 1.09000 * 109.47456 * 90.00158 * 1 2 3 29 29 H 1.09002 * 109.47483 * 210.00173 * 1 2 3 30 30 H 1.09000 * 109.47001 * 330.00417 * 1 2 3 31 31 H 1.08002 * 119.99828 * 359.72418 * 3 2 1 32 32 H 1.08000 * 119.99895 * 180.02562 * 4 3 2 33 33 H 1.08004 * 119.99862 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.47188 * 179.97438 * 9 7 6 35 35 H 1.09002 * 109.47277 * 300.00562 * 9 7 6 36 36 H 1.09001 * 109.47102 * 60.00055 * 9 7 6 37 37 H 0.96996 * 119.99692 * 27.15801 * 10 7 6 38 38 H 0.97006 * 119.99971 * 359.97438 * 15 13 11 39 39 H 1.08998 * 109.46862 * 299.99540 * 16 15 13 40 40 H 1.08993 * 109.47007 * 60.00046 * 16 15 13 41 41 H 1.08998 * 109.46978 * 299.99470 * 17 16 15 42 42 H 1.08998 * 109.47470 * 59.99784 * 17 16 15 43 43 H 0.97004 * 120.00118 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.46790 * 90.00028 * 27 26 2 45 45 H 1.08994 * 109.46757 * 209.99733 * 27 26 2 46 46 H 1.08996 * 109.46941 * 329.99888 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0063 5 6 4.2716 -0.0001 0.0122 6 6 3.5806 -1.1970 0.0111 7 6 4.3340 -2.5022 0.0168 8 1 3.7682 -3.2508 -0.5376 9 6 4.5265 -2.9736 1.4596 10 7 5.6428 -2.3133 -0.6139 11 6 6.2569 -3.3512 -1.2154 12 8 5.7262 -4.4423 -1.2343 13 6 7.5918 -3.1584 -1.8594 14 8 8.1224 -2.0672 -1.8410 15 7 8.2063 -4.1964 -2.4605 16 6 9.5150 -4.0076 -3.0912 17 6 9.9863 -5.3323 -3.6946 18 6 11.3322 -5.1378 -4.3439 19 1 11.8041 -4.1664 -4.3282 20 6 11.9613 -6.2000 -4.9580 21 7 13.1356 -6.0301 -5.5251 22 14 11.1448 -7.8798 -4.9858 23 1 10.2993 -7.9993 -6.2007 24 1 12.1878 -8.9368 -5.0026 25 1 10.2983 -8.0388 -3.7760 26 6 2.1980 -1.1970 0.0058 27 6 1.4444 -2.5021 0.0058 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6583 2.1326 -0.0045 32 1 4.1205 2.1325 0.0068 33 1 5.3516 -0.0001 0.0167 34 1 5.0711 -3.9178 1.4637 35 1 5.0924 -2.2249 2.0140 36 1 3.5528 -3.1141 1.9289 37 1 6.0671 -1.4412 -0.5986 38 1 7.7823 -5.0688 -2.4749 39 1 9.4342 -3.2578 -3.8782 40 1 10.2339 -3.6733 -2.3433 41 1 10.0672 -6.0817 -2.9072 42 1 9.2674 -5.6671 -4.4424 43 1 13.5780 -6.7773 -5.9575 44 1 1.2671 -2.8192 -1.0219 45 1 2.0313 -3.2605 0.5239 46 1 0.4899 -2.3705 0.5153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322964719.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:12 Heat of formation + Delta-G solvation = -60.694844 kcal Electronic energy + Delta-G solvation = -25729.020763 eV Core-core repulsion = 22004.043206 eV Total energy + Delta-G solvation = -3724.977557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.90410 -40.00242 -38.39832 -36.22707 -35.15502 -33.79526 -32.88212 -32.51274 -30.32284 -30.05080 -28.01835 -26.73447 -26.07111 -24.43760 -23.09733 -21.47658 -20.90265 -20.55624 -20.05986 -18.44811 -17.15106 -16.84132 -16.54359 -15.94352 -15.84677 -15.43229 -14.98456 -14.80732 -14.62715 -14.41345 -14.18608 -13.82604 -13.71199 -13.39049 -13.31174 -13.18964 -13.00429 -12.91504 -12.61933 -12.52354 -12.25612 -12.03863 -11.85119 -11.58921 -11.48684 -11.25275 -11.22291 -11.00703 -10.44812 -10.30974 -9.96381 -9.54584 -9.46805 -9.31599 -8.95921 -8.88917 -8.78099 -8.61654 -6.12669 -4.13366 0.95177 1.01059 1.52951 2.44012 3.26366 3.32021 3.34323 3.36175 3.36773 3.78543 4.15116 4.37455 4.39019 4.51956 4.61691 4.64873 4.76217 4.89349 4.92613 4.95758 5.11597 5.20404 5.20575 5.27332 5.32331 5.37664 5.43468 5.50389 5.57108 5.69500 5.82859 5.89743 5.96359 5.99418 6.09954 6.15044 6.21191 6.31161 6.46626 6.50497 6.64359 6.93398 7.09032 7.18076 7.54724 7.62173 7.83728 8.20024 8.41443 8.90600 9.47240 11.00039 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.027152 B = 0.002181 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.986926 B =12836.102221 C =13320.390411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.085 4.085 3 C -0.117 4.117 4 C -0.115 4.115 5 C -0.116 4.116 6 C -0.089 4.089 7 C 0.180 3.820 8 H 0.104 0.896 9 C -0.160 4.160 10 N -0.701 5.701 11 C 0.511 3.489 12 O -0.520 6.520 13 C 0.499 3.501 14 O -0.529 6.529 15 N -0.690 5.690 16 C 0.127 3.873 17 C -0.024 4.024 18 C -0.524 4.524 19 H 0.077 0.923 20 C 0.070 3.930 21 N -0.897 5.897 22 Si 0.881 3.119 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.265 1.265 26 C -0.074 4.074 27 C -0.127 4.127 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.411 0.589 38 H 0.409 0.591 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.025 0.975 42 H 0.020 0.980 43 H 0.265 0.735 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.968 11.555 14.791 32.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.085 4.085 3 C -0.135 4.135 4 C -0.133 4.133 5 C -0.134 4.134 6 C -0.089 4.089 7 C 0.076 3.924 8 H 0.122 0.878 9 C -0.218 4.218 10 N -0.356 5.356 11 C 0.292 3.708 12 O -0.396 6.396 13 C 0.278 3.722 14 O -0.406 6.406 15 N -0.341 5.341 16 C 0.005 3.995 17 C -0.062 4.062 18 C -0.562 4.562 19 H 0.095 0.905 20 C -0.132 4.132 21 N -0.535 5.535 22 Si 0.708 3.292 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.190 1.190 26 C -0.074 4.074 27 C -0.183 4.183 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.250 0.750 38 H 0.244 0.756 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.043 0.957 42 H 0.038 0.962 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -26.787 11.435 14.672 32.613 hybrid contribution -0.151 -0.773 -0.157 0.803 sum -26.938 10.663 14.514 32.404 Atomic orbital electron populations 1.20864 0.91137 1.02897 1.02496 1.19740 0.96042 0.92467 1.00231 1.21045 0.94269 0.97454 1.00740 1.21098 0.94280 0.97946 0.99955 1.20902 0.99837 0.92009 1.00680 1.19703 0.93298 0.94301 1.01642 1.19887 0.82840 0.94871 0.94788 0.87784 1.22185 1.02794 1.02206 0.94609 1.45961 1.20254 1.13538 1.55891 1.20438 0.86660 0.84650 0.79068 1.90743 1.65956 1.24649 1.58207 1.19945 0.85922 0.85521 0.80814 1.90744 1.66126 1.24751 1.59005 1.46206 1.21747 1.12353 1.53821 1.21720 0.80219 1.00876 0.96640 1.19826 0.97773 0.92266 0.96286 1.20873 1.01262 0.98451 1.35644 0.90536 1.24991 0.94686 0.98973 0.94582 1.69898 1.14898 1.32051 1.36667 0.86763 0.79401 0.83956 0.79073 1.20154 1.21227 1.18953 1.19492 0.92419 0.95248 1.00268 1.20992 1.00246 0.94157 1.02902 0.91052 0.91041 0.91588 0.86013 0.85745 0.85972 0.91306 0.91888 0.91072 0.74999 0.75556 0.91248 0.91224 0.95705 0.96150 0.92504 0.90727 0.91013 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 9.61 36.00 0.35 -0.28 16 2 C -0.08 -0.65 5.88 -104.62 -0.62 -1.27 16 3 C -0.12 -0.89 9.70 -39.58 -0.38 -1.27 16 4 C -0.11 -0.92 10.05 -39.58 -0.40 -1.32 16 5 C -0.12 -1.03 9.23 -39.59 -0.37 -1.39 16 6 C -0.09 -0.82 5.04 -104.62 -0.53 -1.34 16 7 C 0.18 1.77 2.12 -69.08 -0.15 1.63 16 8 H 0.10 1.10 6.22 -51.93 -0.32 0.78 16 9 C -0.16 -1.39 9.32 37.16 0.35 -1.04 16 10 N -0.70 -8.11 4.97 -55.36 -0.28 -8.39 16 11 C 0.51 7.36 7.88 -11.59 -0.09 7.27 16 12 O -0.52 -8.24 16.10 5.50 0.09 -8.16 16 13 C 0.50 8.27 7.89 -11.58 -0.09 8.18 16 14 O -0.53 -9.75 16.48 5.50 0.09 -9.66 16 15 N -0.69 -11.88 5.55 -60.73 -0.34 -12.22 16 16 C 0.13 2.54 5.61 -4.04 -0.02 2.52 16 17 C -0.02 -0.54 4.16 -27.88 -0.12 -0.66 16 18 C -0.52 -14.54 9.66 -34.44 -0.33 -14.87 16 19 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 20 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 21 N -0.90 -27.16 13.96 55.43 0.77 -26.38 16 22 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 26 C -0.07 -0.62 5.88 -104.62 -0.62 -1.23 16 27 C -0.13 -0.83 8.80 36.01 0.32 -0.52 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.32 5.94 -51.93 -0.31 0.01 16 30 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 31 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 32 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.12 0.99 6.18 -52.48 -0.32 0.66 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.51 7.15 -51.93 -0.37 0.13 16 37 H 0.41 4.43 5.79 -40.82 -0.24 4.19 16 38 H 0.41 6.51 7.95 -40.82 -0.32 6.19 16 39 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.02 0.56 7.20 -51.93 -0.37 0.18 16 42 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.46 5.63 -51.93 -0.29 0.17 16 46 H 0.07 0.37 5.94 -51.93 -0.31 0.06 16 LS Contribution 376.47 15.07 5.67 5.67 Total: -1.00 -32.19 376.47 -8.09 -40.28 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.64 Total: 6.07 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -2.79 Total: -3.69 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: 0.16 Total: -46.99 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: 0.18 Total: -17.82 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.19 -8.09 -40.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322964719.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.412 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds