Wall clock time and date at job start Tue Mar 31 2020 12:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38256 * 120.00175 * 2 1 4 4 C 1.38217 * 119.99898 * 179.69627 * 3 2 1 5 5 C 1.38254 * 119.99970 * 0.02562 * 4 3 2 6 6 C 1.38209 * 120.00472 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00526 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47385 * 212.56704 * 7 6 5 9 9 C 1.52998 * 109.47357 * 92.56209 * 7 6 5 10 10 N 1.46504 * 109.47018 * 332.56521 * 7 6 5 11 11 C 1.34773 * 119.99738 * 207.16472 * 10 7 6 12 12 O 1.21348 * 120.00468 * 359.97438 * 11 10 7 13 13 C 1.49452 * 119.99662 * 179.97438 * 11 10 7 14 14 O 1.21348 * 120.00277 * 359.97438 * 13 11 10 15 15 N 1.34776 * 120.00214 * 179.97438 * 13 11 10 16 16 C 1.46504 * 120.00290 * 180.02562 * 15 13 11 17 17 C 1.53001 * 109.46921 * 179.97438 * 16 15 13 18 18 C 1.50702 * 109.46704 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00304 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99709 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99772 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00151 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47397 * 89.99503 * 22 20 18 24 24 H 1.48504 * 109.46940 * 209.99967 * 22 20 18 25 25 H 1.48506 * 109.47030 * 329.99475 * 22 20 18 26 26 C 1.38219 * 119.99565 * 179.72164 * 2 1 3 27 27 C 1.50701 * 120.00180 * 0.28019 * 26 2 1 28 28 H 1.09000 * 109.47456 * 90.00158 * 1 2 3 29 29 H 1.09002 * 109.47483 * 210.00173 * 1 2 3 30 30 H 1.09000 * 109.47001 * 330.00417 * 1 2 3 31 31 H 1.08002 * 119.99828 * 359.72418 * 3 2 1 32 32 H 1.08000 * 119.99895 * 180.02562 * 4 3 2 33 33 H 1.08004 * 119.99862 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.47188 * 179.97438 * 9 7 6 35 35 H 1.09002 * 109.47277 * 300.00562 * 9 7 6 36 36 H 1.09001 * 109.47102 * 60.00055 * 9 7 6 37 37 H 0.96996 * 119.99692 * 27.15801 * 10 7 6 38 38 H 0.97006 * 119.99971 * 359.97438 * 15 13 11 39 39 H 1.08998 * 109.46862 * 299.99540 * 16 15 13 40 40 H 1.08993 * 109.47007 * 60.00046 * 16 15 13 41 41 H 1.08998 * 109.46978 * 299.99470 * 17 16 15 42 42 H 1.08998 * 109.47470 * 59.99784 * 17 16 15 43 43 H 0.97004 * 120.00118 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.46790 * 90.00028 * 27 26 2 45 45 H 1.08994 * 109.46757 * 209.99733 * 27 26 2 46 46 H 1.08996 * 109.46941 * 329.99888 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0063 5 6 4.2716 -0.0001 0.0122 6 6 3.5806 -1.1970 0.0111 7 6 4.3340 -2.5022 0.0168 8 1 3.7682 -3.2508 -0.5376 9 6 4.5265 -2.9736 1.4596 10 7 5.6428 -2.3133 -0.6139 11 6 6.2569 -3.3512 -1.2154 12 8 5.7262 -4.4423 -1.2343 13 6 7.5918 -3.1584 -1.8594 14 8 8.1224 -2.0672 -1.8410 15 7 8.2063 -4.1964 -2.4605 16 6 9.5150 -4.0076 -3.0912 17 6 9.9863 -5.3323 -3.6946 18 6 11.3322 -5.1378 -4.3439 19 1 11.8041 -4.1664 -4.3282 20 6 11.9613 -6.2000 -4.9580 21 7 13.1356 -6.0301 -5.5251 22 14 11.1448 -7.8798 -4.9858 23 1 10.2993 -7.9993 -6.2007 24 1 12.1878 -8.9368 -5.0026 25 1 10.2983 -8.0388 -3.7760 26 6 2.1980 -1.1970 0.0058 27 6 1.4444 -2.5021 0.0058 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6583 2.1326 -0.0045 32 1 4.1205 2.1325 0.0068 33 1 5.3516 -0.0001 0.0167 34 1 5.0711 -3.9178 1.4637 35 1 5.0924 -2.2249 2.0140 36 1 3.5528 -3.1141 1.9289 37 1 6.0671 -1.4412 -0.5986 38 1 7.7823 -5.0688 -2.4749 39 1 9.4342 -3.2578 -3.8782 40 1 10.2339 -3.6733 -2.3433 41 1 10.0672 -6.0817 -2.9072 42 1 9.2674 -5.6671 -4.4424 43 1 13.5780 -6.7773 -5.9575 44 1 1.2671 -2.8192 -1.0219 45 1 2.0313 -3.2605 0.5239 46 1 0.4899 -2.3705 0.5153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322964719.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:10 Heat of formation + Delta-G solvation = -81.758259 kcal Electronic energy + Delta-G solvation = -25729.934141 eV Core-core repulsion = 22004.043206 eV Total energy + Delta-G solvation = -3725.890935 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.94462 -40.86722 -39.61712 -37.24923 -36.63158 -34.83527 -34.34367 -33.35309 -32.13877 -30.80036 -28.56121 -27.66551 -27.24737 -25.65439 -24.15904 -22.69359 -22.15659 -21.53787 -20.95975 -19.67002 -19.02947 -18.02877 -17.40902 -17.11655 -16.88359 -16.30132 -16.17505 -16.10469 -15.90092 -15.42517 -15.27845 -15.04445 -14.75354 -14.58410 -14.42730 -13.90507 -13.84919 -13.68891 -13.47687 -13.40307 -13.19310 -13.07854 -12.85691 -12.73063 -12.60796 -12.46167 -12.23493 -12.20329 -11.78755 -11.76049 -11.63564 -11.51889 -10.79594 -10.76408 -10.50200 -10.26474 -9.58079 -9.46862 -8.30665 -6.37487 0.26609 0.34115 0.42105 1.26327 1.39381 1.40895 1.52144 2.07662 2.35942 2.57789 2.76187 3.04433 3.36674 3.47221 3.83140 3.96510 4.09119 4.16702 4.19424 4.25230 4.29082 4.37734 4.45401 4.57158 4.69482 4.71278 4.74743 4.76925 4.81607 4.87722 4.96511 4.98222 5.00458 5.11468 5.15057 5.24519 5.28134 5.36208 5.40517 5.54635 5.56233 5.58467 5.71700 5.87043 6.08787 6.19652 6.30649 6.64694 6.71368 6.88608 7.26995 8.85520 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.027152 B = 0.002181 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.986926 B =12836.102221 C =13320.390411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.093 4.093 3 C -0.123 4.123 4 C -0.124 4.124 5 C -0.131 4.131 6 C -0.101 4.101 7 C 0.182 3.818 8 H 0.098 0.902 9 C -0.155 4.155 10 N -0.687 5.687 11 C 0.518 3.482 12 O -0.534 6.534 13 C 0.500 3.500 14 O -0.549 6.549 15 N -0.686 5.686 16 C 0.142 3.858 17 C -0.017 4.017 18 C -0.536 4.536 19 H 0.036 0.964 20 C 0.007 3.993 21 N -0.947 5.947 22 Si 0.953 3.047 23 H -0.266 1.266 24 H -0.285 1.285 25 H -0.241 1.241 26 C -0.084 4.084 27 C -0.127 4.127 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.123 0.877 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.415 0.585 38 H 0.418 0.582 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.036 0.964 42 H 0.034 0.966 43 H 0.268 0.732 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.956 11.004 15.890 35.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.093 4.093 3 C -0.141 4.141 4 C -0.142 4.142 5 C -0.150 4.150 6 C -0.102 4.102 7 C 0.078 3.922 8 H 0.116 0.884 9 C -0.213 4.213 10 N -0.342 5.342 11 C 0.299 3.701 12 O -0.411 6.411 13 C 0.281 3.719 14 O -0.428 6.428 15 N -0.338 5.338 16 C 0.019 3.981 17 C -0.055 4.055 18 C -0.574 4.574 19 H 0.054 0.946 20 C -0.191 4.191 21 N -0.587 5.587 22 Si 0.776 3.224 23 H -0.191 1.191 24 H -0.211 1.211 25 H -0.164 1.164 26 C -0.084 4.084 27 C -0.183 4.183 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.159 0.841 32 H 0.156 0.844 33 H 0.141 0.859 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.255 0.745 38 H 0.255 0.745 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -29.816 10.912 15.801 35.464 hybrid contribution 0.776 -0.432 -0.480 1.010 sum -29.040 10.480 15.321 34.465 Atomic orbital electron populations 1.20911 0.89425 1.03910 1.03040 1.20082 0.97421 0.92247 0.99506 1.21358 0.94283 0.98389 1.00032 1.21343 0.94820 0.98252 0.99760 1.21034 1.00095 0.92450 1.01395 1.19690 0.93786 0.93816 1.02875 1.19994 0.81626 0.95405 0.95135 0.88386 1.22150 1.03722 1.01528 0.93906 1.45993 1.20642 1.12957 1.54596 1.19921 0.85741 0.85068 0.79410 1.90743 1.66021 1.25199 1.59156 1.20326 0.86598 0.84840 0.80176 1.90736 1.66870 1.25523 1.59625 1.45974 1.20801 1.13148 1.53898 1.21292 0.81473 0.99202 0.96156 1.19695 0.95355 0.93848 0.96598 1.21194 1.03374 0.96926 1.35935 0.94593 1.26005 0.95239 1.03772 0.94075 1.70057 1.16885 1.33623 1.38122 0.85619 0.78593 0.77895 0.80303 1.19092 1.21132 1.16394 1.19736 0.92238 0.96333 1.00109 1.21031 1.00872 0.93312 1.03081 0.90626 0.90166 0.90504 0.84137 0.84354 0.85877 0.92473 0.91590 0.89293 0.74506 0.74496 0.92255 0.92188 0.94550 0.94740 0.92311 0.90820 0.91009 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 9.61 71.23 0.68 -0.26 16 2 C -0.09 -1.25 5.88 -19.87 -0.12 -1.36 16 3 C -0.12 -1.63 9.70 22.27 0.22 -1.42 16 4 C -0.12 -1.82 10.05 22.27 0.22 -1.60 16 5 C -0.13 -2.22 9.23 22.27 0.21 -2.01 16 6 C -0.10 -1.74 5.04 -19.87 -0.10 -1.84 16 7 C 0.18 3.38 2.12 44.24 0.09 3.47 16 8 H 0.10 1.97 6.22 -2.39 -0.01 1.96 16 9 C -0.16 -2.49 9.32 71.98 0.67 -1.81 16 10 N -0.69 -15.32 4.97 -447.44 -2.23 -17.54 16 11 C 0.52 14.43 7.88 87.27 0.69 15.12 16 12 O -0.53 -16.24 16.10 -3.24 -0.05 -16.30 16 13 C 0.50 16.23 7.89 87.27 0.69 16.92 16 14 O -0.55 -20.11 16.48 -3.24 -0.05 -20.16 16 15 N -0.69 -22.90 5.55 -464.41 -2.58 -25.48 16 16 C 0.14 5.64 5.61 86.38 0.48 6.13 16 17 C -0.02 -0.77 4.16 29.85 0.12 -0.64 16 18 C -0.54 -30.24 9.66 25.60 0.25 -29.99 16 19 H 0.04 2.25 7.99 -2.91 -0.02 2.22 16 20 C 0.01 0.38 5.47 84.66 0.46 0.84 16 21 N -0.95 -58.67 13.96 21.45 0.30 -58.37 16 22 Si 0.95 42.82 27.47 68.60 1.88 44.70 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 24 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 25 H -0.24 -9.81 6.54 99.48 0.65 -9.16 16 26 C -0.08 -1.27 5.88 -19.86 -0.12 -1.38 16 27 C -0.13 -1.44 8.80 71.24 0.63 -0.81 16 28 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.08 0.50 5.94 -2.39 -0.01 0.49 16 30 H 0.08 0.46 8.09 -2.39 -0.02 0.44 16 31 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 32 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.12 1.93 6.18 -2.91 -0.02 1.91 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.09 1.10 7.15 -2.39 -0.02 1.09 16 37 H 0.42 8.68 5.79 -92.71 -0.54 8.15 16 38 H 0.42 12.55 7.95 -92.70 -0.74 11.81 16 39 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.04 1.55 7.20 -2.39 -0.02 1.53 16 42 H 0.03 1.45 7.57 -2.39 -0.02 1.43 16 43 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 44 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.07 0.80 5.63 -2.39 -0.01 0.78 16 46 H 0.09 0.69 5.94 -2.39 -0.01 0.67 16 Total: -1.00 -69.53 376.47 2.05 -67.49 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: -0.31 Total: 26.32 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 5.08 Total: -0.65 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -4.50 Total: -101.39 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -0.11 Total: -36.46 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.88 Total: 44.70 kcal Total: -69.53 2.05 -67.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322964719.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.271 kcal (2) G-P(sol) polarization free energy of solvation -69.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds