Wall clock time and date at job start Tue Mar 31 2020 12:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38230 * 120.00068 * 2 1 4 4 C 1.38236 * 119.99883 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.99991 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00089 * 359.97438 * 4 3 2 7 7 C 1.38237 * 119.99843 * 0.02562 * 6 4 3 8 8 C 1.50706 * 119.99763 * 179.97438 * 7 6 4 9 9 C 1.52997 * 109.47238 * 89.99937 * 8 7 6 10 10 N 1.46496 * 109.47294 * 179.97438 * 9 8 7 11 11 C 1.34779 * 120.00447 * 179.97438 * 10 9 8 12 12 O 1.21350 * 119.99353 * 0.02562 * 11 10 9 13 13 C 1.49446 * 120.00046 * 179.97438 * 11 10 9 14 14 O 1.21345 * 120.00194 * 0.02562 * 13 11 10 15 15 N 1.34774 * 119.99676 * 179.97438 * 13 11 10 16 16 C 1.46506 * 119.99731 * 180.02562 * 15 13 11 17 17 C 1.52997 * 109.46949 * 180.02562 * 16 15 13 18 18 C 1.50696 * 109.47242 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00103 * 359.97438 * 18 17 16 20 20 C 1.37882 * 120.00363 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99700 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00226 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46904 * 89.99988 * 22 20 18 24 24 H 1.48498 * 109.47118 * 209.99645 * 22 20 18 25 25 H 1.48499 * 109.47134 * 330.00165 * 22 20 18 26 26 C 1.38236 * 120.00188 * 0.24641 * 7 6 4 27 27 H 1.08991 * 109.47181 * 89.99887 * 1 2 3 28 28 H 1.09000 * 109.47228 * 210.00058 * 1 2 3 29 29 H 1.09002 * 109.46642 * 329.99546 * 1 2 3 30 30 H 1.07992 * 119.99956 * 0.02562 * 3 2 1 31 31 H 1.09006 * 109.46774 * 270.01537 * 5 4 3 32 32 H 1.08991 * 109.47483 * 30.01558 * 5 4 3 33 33 H 1.09000 * 109.47116 * 150.02175 * 5 4 3 34 34 H 1.07998 * 120.00589 * 179.97438 * 6 4 3 35 35 H 1.09001 * 109.46953 * 209.99549 * 8 7 6 36 36 H 1.09000 * 109.47318 * 329.99147 * 8 7 6 37 37 H 1.09001 * 109.46832 * 299.99686 * 9 8 7 38 38 H 1.09004 * 109.47261 * 59.99705 * 9 8 7 39 39 H 0.97006 * 119.99755 * 359.97438 * 10 9 8 40 40 H 0.96994 * 120.00416 * 359.97438 * 15 13 11 41 41 H 1.09001 * 109.47068 * 299.99552 * 16 15 13 42 42 H 1.08996 * 109.47564 * 60.00090 * 16 15 13 43 43 H 1.09001 * 109.47289 * 299.99924 * 17 16 15 44 44 H 1.09000 * 109.47611 * 59.99353 * 17 16 15 45 45 H 0.96999 * 120.00022 * 180.02562 * 21 20 18 46 46 H 1.07997 * 120.00153 * 179.72710 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3341 2.5021 -0.0011 6 6 4.2717 -0.0001 -0.0005 7 6 3.5805 -1.1973 -0.0005 8 6 4.3340 -2.5024 -0.0011 9 6 4.5896 -2.9444 1.4411 10 7 5.3215 -4.2134 1.4406 11 6 5.6593 -4.7971 2.6075 12 8 5.3567 -4.2717 3.6586 13 6 6.4055 -6.0920 2.6068 14 8 6.7077 -6.6176 1.5557 15 7 6.7437 -6.6754 3.7738 16 6 7.4757 -7.9445 3.7731 17 6 7.7319 -8.3861 5.2154 18 6 8.4842 -9.6919 5.2148 19 1 8.7525 -10.1601 4.2793 20 6 8.8293 -10.2893 6.4086 21 7 8.5021 -9.7194 7.5478 22 14 9.7613 -11.9082 6.4078 23 1 11.2216 -11.6386 6.4066 24 1 9.4027 -12.6864 7.6207 25 1 9.4005 -12.6865 5.1956 26 6 2.1981 -1.1972 -0.0057 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6582 2.1323 0.0004 31 1 4.5151 2.8166 -1.0290 32 1 3.7455 3.2618 0.5130 33 1 5.2869 2.3718 0.5120 34 1 5.3517 -0.0002 -0.0014 35 1 3.7447 -3.2619 -0.5148 36 1 5.2862 -2.3720 -0.5154 37 1 5.1789 -2.1849 1.9549 38 1 3.6374 -3.0748 1.9554 39 1 5.5631 -4.6336 0.6003 40 1 6.5032 -6.2547 4.6140 41 1 6.8856 -8.7040 3.2603 42 1 8.4275 -7.8147 3.2580 43 1 8.3217 -7.6267 5.7286 44 1 6.7799 -8.5160 5.7302 45 1 8.7451 -10.1395 8.3877 46 1 1.6581 -2.1325 -0.0101 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323359436.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:40 Heat of formation + Delta-G solvation = -78.637136 kcal Electronic energy + Delta-G solvation = -24564.163437 eV Core-core repulsion = 20838.407844 eV Total energy + Delta-G solvation = -3725.755593 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.46273 -39.97922 -38.31077 -36.09036 -35.03782 -33.88721 -33.45663 -32.81822 -29.86811 -29.51584 -27.62411 -27.06477 -25.84044 -24.39399 -22.69279 -21.10906 -21.10758 -20.92347 -20.02535 -18.23248 -16.87822 -16.63324 -16.40265 -16.29286 -15.80210 -15.47309 -14.82455 -14.77909 -14.60512 -14.49121 -14.33064 -13.80820 -13.60348 -13.48003 -13.29114 -13.28846 -12.92530 -12.88438 -12.68725 -12.40594 -12.32312 -11.73862 -11.64798 -11.54511 -11.31919 -11.28451 -11.22826 -11.06118 -10.66663 -10.39685 -9.79760 -9.45154 -9.36316 -9.20793 -8.95613 -8.89718 -8.69487 -8.41619 -6.10007 -4.13717 0.96958 1.01548 1.62036 2.53639 3.29127 3.33269 3.35444 3.39144 3.43693 3.86768 4.34704 4.36813 4.40560 4.43663 4.64386 4.73496 4.77954 4.79374 4.92711 4.96709 5.15324 5.16625 5.20582 5.23470 5.26503 5.26826 5.38814 5.49174 5.54415 5.63563 5.79310 5.84484 6.09667 6.18230 6.19697 6.19869 6.23948 6.28599 6.59693 6.67213 6.69462 7.04918 7.46955 7.57997 7.67095 7.87276 7.93143 8.21389 8.34258 8.91872 9.51148 11.01444 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.032203 B = 0.001643 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.280896 B =17033.283367 C =17115.019168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.081 4.081 3 C -0.124 4.124 4 C -0.081 4.081 5 C -0.115 4.115 6 C -0.120 4.120 7 C -0.072 4.072 8 C -0.093 4.093 9 C 0.124 3.876 10 N -0.707 5.707 11 C 0.507 3.493 12 O -0.519 6.519 13 C 0.497 3.503 14 O -0.534 6.534 15 N -0.686 5.686 16 C 0.118 3.882 17 C 0.010 3.990 18 C -0.524 4.524 19 H 0.060 0.940 20 C 0.059 3.941 21 N -0.892 5.892 22 Si 0.898 3.102 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.273 1.273 26 C -0.120 4.120 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.120 0.880 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.122 0.878 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.413 0.587 40 H 0.411 0.589 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.025 0.975 44 H 0.025 0.975 45 H 0.263 0.737 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.705 23.735 -17.544 32.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.081 4.081 3 C -0.142 4.142 4 C -0.081 4.081 5 C -0.172 4.172 6 C -0.138 4.138 7 C -0.073 4.073 8 C -0.131 4.131 9 C 0.001 3.999 10 N -0.362 5.362 11 C 0.288 3.712 12 O -0.394 6.394 13 C 0.277 3.723 14 O -0.412 6.412 15 N -0.337 5.337 16 C -0.003 4.003 17 C -0.027 4.027 18 C -0.562 4.562 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.530 5.530 22 Si 0.726 3.274 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.138 4.138 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.138 0.862 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.140 0.860 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.249 0.751 40 H 0.246 0.754 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.044 0.956 44 H 0.044 0.956 45 H 0.072 0.928 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.688 23.693 -17.307 32.377 hybrid contribution 0.497 -0.841 0.137 0.986 sum -13.191 22.853 -17.170 31.481 Atomic orbital electron populations 1.20803 0.91124 1.02935 1.02348 1.19897 0.96087 0.93034 0.99062 1.20919 0.93543 0.97566 1.02174 1.19896 0.93806 0.95314 0.99064 1.20803 1.00031 0.94026 1.02349 1.20940 0.99787 0.91406 1.01623 1.19586 0.93587 0.94227 0.99878 1.20794 1.01061 0.94830 0.96366 1.21407 0.97140 0.84858 0.96536 1.45752 1.57339 1.23907 1.09158 1.20459 0.80317 0.86161 0.84229 1.90764 1.53171 1.64457 1.31033 1.19967 0.81447 0.85579 0.85322 1.90725 1.54743 1.64716 1.31050 1.46238 1.54799 1.24630 1.08008 1.21938 0.94724 0.81451 1.02192 1.19362 0.97863 0.97032 0.88461 1.21014 1.36535 1.05913 0.92762 0.92159 1.25008 0.95908 0.97889 0.95491 1.69963 1.46396 1.39332 0.97351 0.86491 0.80039 0.83272 0.77610 1.20551 1.21157 1.19732 1.20941 0.93444 0.97748 1.01623 0.91150 0.91378 0.91530 0.86217 0.91151 0.91530 0.91378 0.85961 0.89889 0.89887 0.90798 0.90805 0.75106 0.75371 0.91849 0.91849 0.95647 0.95636 0.92778 0.85960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 10.01 36.01 0.36 -0.27 16 2 C -0.08 -0.61 5.88 -104.62 -0.62 -1.23 16 3 C -0.12 -0.92 9.36 -39.59 -0.37 -1.29 16 4 C -0.08 -0.61 5.88 -104.62 -0.62 -1.23 16 5 C -0.12 -0.63 10.01 36.01 0.36 -0.27 16 6 C -0.12 -0.94 9.36 -39.58 -0.37 -1.31 16 7 C -0.07 -0.57 5.13 -104.62 -0.54 -1.11 16 8 C -0.09 -0.64 5.46 -27.88 -0.15 -0.80 16 9 C 0.12 1.16 5.66 -4.05 -0.02 1.14 16 10 N -0.71 -7.98 5.55 -60.73 -0.34 -8.32 16 11 C 0.51 7.64 7.89 -11.59 -0.09 7.55 16 12 O -0.52 -8.93 16.48 5.50 0.09 -8.84 16 13 C 0.50 8.58 7.89 -11.59 -0.09 8.49 16 14 O -0.53 -10.06 16.48 5.50 0.09 -9.97 16 15 N -0.69 -12.59 5.55 -60.73 -0.34 -12.93 16 16 C 0.12 2.48 5.61 -4.04 -0.02 2.46 16 17 C 0.01 0.26 5.09 -27.89 -0.14 0.11 16 18 C -0.52 -14.41 9.11 -34.44 -0.31 -14.73 16 19 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 22 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 26 C -0.12 -0.94 9.36 -39.58 -0.37 -1.31 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 29 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 30 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 33 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 34 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 35 H 0.08 0.50 8.08 -51.93 -0.42 0.09 16 36 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.41 4.07 7.94 -40.82 -0.32 3.74 16 40 H 0.41 7.21 7.94 -40.82 -0.32 6.88 16 41 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 46 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 395.11 15.07 5.95 5.95 Total: -1.00 -32.16 395.11 -9.27 -41.44 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -7.36 Total: 4.01 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -3.09 Total: -2.22 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.06 Total: -46.63 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: 0.18 Total: -18.81 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.16 -9.27 -41.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323359436.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.200 kcal (2) G-P(sol) polarization free energy of solvation -32.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds