Wall clock time and date at job start Tue Mar 31 2020 12:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38230 * 120.00068 * 2 1 4 4 C 1.38236 * 119.99883 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.99991 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00089 * 359.97438 * 4 3 2 7 7 C 1.38237 * 119.99843 * 0.02562 * 6 4 3 8 8 C 1.50706 * 119.99763 * 179.97438 * 7 6 4 9 9 C 1.52997 * 109.47238 * 89.99937 * 8 7 6 10 10 N 1.46496 * 109.47294 * 179.97438 * 9 8 7 11 11 C 1.34779 * 120.00447 * 179.97438 * 10 9 8 12 12 O 1.21350 * 119.99353 * 0.02562 * 11 10 9 13 13 C 1.49446 * 120.00046 * 179.97438 * 11 10 9 14 14 O 1.21345 * 120.00194 * 0.02562 * 13 11 10 15 15 N 1.34774 * 119.99676 * 179.97438 * 13 11 10 16 16 C 1.46506 * 119.99731 * 180.02562 * 15 13 11 17 17 C 1.52997 * 109.46949 * 180.02562 * 16 15 13 18 18 C 1.50696 * 109.47242 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00103 * 359.97438 * 18 17 16 20 20 C 1.37882 * 120.00363 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99700 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00226 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46904 * 89.99988 * 22 20 18 24 24 H 1.48498 * 109.47118 * 209.99645 * 22 20 18 25 25 H 1.48499 * 109.47134 * 330.00165 * 22 20 18 26 26 C 1.38236 * 120.00188 * 0.24641 * 7 6 4 27 27 H 1.08991 * 109.47181 * 89.99887 * 1 2 3 28 28 H 1.09000 * 109.47228 * 210.00058 * 1 2 3 29 29 H 1.09002 * 109.46642 * 329.99546 * 1 2 3 30 30 H 1.07992 * 119.99956 * 0.02562 * 3 2 1 31 31 H 1.09006 * 109.46774 * 270.01537 * 5 4 3 32 32 H 1.08991 * 109.47483 * 30.01558 * 5 4 3 33 33 H 1.09000 * 109.47116 * 150.02175 * 5 4 3 34 34 H 1.07998 * 120.00589 * 179.97438 * 6 4 3 35 35 H 1.09001 * 109.46953 * 209.99549 * 8 7 6 36 36 H 1.09000 * 109.47318 * 329.99147 * 8 7 6 37 37 H 1.09001 * 109.46832 * 299.99686 * 9 8 7 38 38 H 1.09004 * 109.47261 * 59.99705 * 9 8 7 39 39 H 0.97006 * 119.99755 * 359.97438 * 10 9 8 40 40 H 0.96994 * 120.00416 * 359.97438 * 15 13 11 41 41 H 1.09001 * 109.47068 * 299.99552 * 16 15 13 42 42 H 1.08996 * 109.47564 * 60.00090 * 16 15 13 43 43 H 1.09001 * 109.47289 * 299.99924 * 17 16 15 44 44 H 1.09000 * 109.47611 * 59.99353 * 17 16 15 45 45 H 0.96999 * 120.00022 * 180.02562 * 21 20 18 46 46 H 1.07997 * 120.00153 * 179.72710 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3341 2.5021 -0.0011 6 6 4.2717 -0.0001 -0.0005 7 6 3.5805 -1.1973 -0.0005 8 6 4.3340 -2.5024 -0.0011 9 6 4.5896 -2.9444 1.4411 10 7 5.3215 -4.2134 1.4406 11 6 5.6593 -4.7971 2.6075 12 8 5.3567 -4.2717 3.6586 13 6 6.4055 -6.0920 2.6068 14 8 6.7077 -6.6176 1.5557 15 7 6.7437 -6.6754 3.7738 16 6 7.4757 -7.9445 3.7731 17 6 7.7319 -8.3861 5.2154 18 6 8.4842 -9.6919 5.2148 19 1 8.7525 -10.1601 4.2793 20 6 8.8293 -10.2893 6.4086 21 7 8.5021 -9.7194 7.5478 22 14 9.7613 -11.9082 6.4078 23 1 11.2216 -11.6386 6.4066 24 1 9.4027 -12.6864 7.6207 25 1 9.4005 -12.6865 5.1956 26 6 2.1981 -1.1972 -0.0057 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6582 2.1323 0.0004 31 1 4.5151 2.8166 -1.0290 32 1 3.7455 3.2618 0.5130 33 1 5.2869 2.3718 0.5120 34 1 5.3517 -0.0002 -0.0014 35 1 3.7447 -3.2619 -0.5148 36 1 5.2862 -2.3720 -0.5154 37 1 5.1789 -2.1849 1.9549 38 1 3.6374 -3.0748 1.9554 39 1 5.5631 -4.6336 0.6003 40 1 6.5032 -6.2547 4.6140 41 1 6.8856 -8.7040 3.2603 42 1 8.4275 -7.8147 3.2580 43 1 8.3217 -7.6267 5.7286 44 1 6.7799 -8.5160 5.7302 45 1 8.7451 -10.1395 8.3877 46 1 1.6581 -2.1325 -0.0101 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323359436.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:39 Heat of formation + Delta-G solvation = -98.606794 kcal Electronic energy + Delta-G solvation = -24565.029386 eV Core-core repulsion = 20838.407844 eV Total energy + Delta-G solvation = -3726.621542 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.71694 -40.58146 -39.64027 -37.15939 -36.53661 -34.87719 -34.36966 -34.15962 -31.69884 -30.29259 -28.14998 -27.55362 -27.40772 -25.71935 -23.89659 -22.77553 -21.80309 -21.61514 -21.13850 -19.52619 -18.58137 -17.87612 -17.30023 -17.18069 -16.76766 -16.67801 -16.50326 -16.08755 -15.97289 -15.19755 -15.05006 -14.99364 -14.75886 -14.32841 -14.30700 -13.99986 -13.86176 -13.79746 -13.36055 -13.31767 -13.25956 -12.95169 -12.92435 -12.85712 -12.52669 -12.33228 -12.28161 -12.17602 -11.87604 -11.80755 -11.68468 -11.43891 -10.72549 -10.61470 -10.37959 -10.20080 -9.52600 -9.43520 -8.23302 -6.34616 0.30790 0.40011 0.46603 1.31498 1.44010 1.44117 1.55772 2.10907 2.39986 2.65242 2.80190 3.11653 3.41649 3.82887 3.83059 3.93466 3.99422 4.13233 4.26988 4.38552 4.43854 4.45184 4.51135 4.54180 4.66967 4.72031 4.79586 4.81142 4.81144 4.84882 4.93782 5.04709 5.07366 5.08225 5.14018 5.29635 5.37569 5.42246 5.54700 5.64923 5.66269 5.74010 5.75325 5.91495 6.12840 6.14925 6.35475 6.69934 6.79706 6.91775 7.34964 8.88682 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.032203 B = 0.001643 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.280896 B =17033.283367 C =17115.019168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.092 4.092 3 C -0.136 4.136 4 C -0.092 4.092 5 C -0.114 4.114 6 C -0.134 4.134 7 C -0.081 4.081 8 C -0.082 4.082 9 C 0.126 3.874 10 N -0.686 5.686 11 C 0.513 3.487 12 O -0.544 6.544 13 C 0.501 3.499 14 O -0.548 6.548 15 N -0.689 5.689 16 C 0.138 3.862 17 C 0.017 3.983 18 C -0.545 4.545 19 H 0.065 0.935 20 C 0.004 3.996 21 N -0.928 5.928 22 Si 0.969 3.031 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.263 1.263 26 C -0.134 4.134 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.133 0.867 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.130 0.870 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.422 0.578 40 H 0.414 0.586 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.008 0.992 44 H 0.008 0.992 45 H 0.265 0.735 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.854 24.002 -18.991 33.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.154 4.154 4 C -0.092 4.092 5 C -0.171 4.171 6 C -0.152 4.152 7 C -0.081 4.081 8 C -0.120 4.120 9 C 0.003 3.997 10 N -0.339 5.339 11 C 0.293 3.707 12 O -0.421 6.421 13 C 0.282 3.718 14 O -0.426 6.426 15 N -0.340 5.340 16 C 0.015 3.985 17 C -0.020 4.020 18 C -0.583 4.583 19 H 0.084 0.916 20 C -0.194 4.194 21 N -0.568 5.568 22 Si 0.793 3.207 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.187 1.187 26 C -0.152 4.152 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.151 0.849 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.148 0.852 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.260 0.740 40 H 0.250 0.750 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.074 0.926 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.850 23.985 -18.806 33.478 hybrid contribution 0.492 -0.834 0.539 1.108 sum -13.358 23.151 -18.267 32.374 Atomic orbital electron populations 1.20833 0.89852 1.03413 1.02995 1.20203 0.97232 0.93053 0.98667 1.21186 0.93810 0.98236 1.02149 1.20202 0.94182 0.96101 0.98668 1.20832 0.99997 0.93268 1.02996 1.21159 1.00390 0.91674 1.01975 1.19701 0.93775 0.94526 1.00145 1.20726 1.01855 0.94751 0.94640 1.21519 0.96371 0.83493 0.98319 1.45714 1.55863 1.24011 1.08340 1.19982 0.80384 0.85330 0.84957 1.90766 1.54477 1.64830 1.32035 1.20306 0.80915 0.86143 0.84479 1.90715 1.55228 1.65327 1.31378 1.46083 1.55050 1.24038 1.08859 1.21486 0.95034 0.82627 0.99349 1.19188 0.96307 0.95975 0.90554 1.21455 1.36768 1.06966 0.93154 0.91642 1.25931 0.96799 1.01628 0.95078 1.70082 1.47586 1.41072 0.98016 0.85390 0.78700 0.78721 0.77888 1.19786 1.20787 1.18739 1.21160 0.93706 0.98355 1.01973 0.90351 0.91157 0.90815 0.84890 0.90352 0.90814 0.91156 0.85164 0.88675 0.88674 0.91275 0.91286 0.73983 0.74957 0.91950 0.91923 0.97414 0.97410 0.92589 0.85161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 71.24 0.71 -0.39 16 2 C -0.09 -1.29 5.88 -19.86 -0.12 -1.41 16 3 C -0.14 -1.89 9.36 22.27 0.21 -1.68 16 4 C -0.09 -1.29 5.88 -19.87 -0.12 -1.41 16 5 C -0.11 -1.11 10.01 71.24 0.71 -0.39 16 6 C -0.13 -1.97 9.36 22.27 0.21 -1.77 16 7 C -0.08 -1.18 5.13 -19.86 -0.10 -1.28 16 8 C -0.08 -0.99 5.46 29.85 0.16 -0.83 16 9 C 0.13 2.18 5.66 86.38 0.49 2.67 16 10 N -0.69 -14.40 5.55 -464.42 -2.58 -16.97 16 11 C 0.51 14.97 7.89 87.27 0.69 15.66 16 12 O -0.54 -18.44 16.48 -3.25 -0.05 -18.49 16 13 C 0.50 16.92 7.89 87.27 0.69 17.61 16 14 O -0.55 -19.99 16.48 -3.23 -0.05 -20.04 16 15 N -0.69 -25.26 5.55 -464.42 -2.58 -27.84 16 16 C 0.14 5.78 5.61 86.38 0.48 6.26 16 17 C 0.02 0.88 5.09 29.85 0.15 1.03 16 18 C -0.55 -30.12 9.11 25.60 0.23 -29.88 16 19 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 20 C 0.00 0.24 5.46 84.66 0.46 0.71 16 21 N -0.93 -54.93 13.29 21.45 0.28 -54.64 16 22 Si 0.97 43.37 29.54 68.60 2.03 45.40 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 25 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 26 C -0.13 -1.97 9.36 22.27 0.21 -1.76 16 27 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 29 H 0.07 0.59 8.09 -2.39 -0.02 0.57 16 30 H 0.13 1.37 8.06 -2.91 -0.02 1.35 16 31 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.07 0.59 8.08 -2.39 -0.02 0.57 16 33 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 34 H 0.13 1.59 8.06 -2.91 -0.02 1.57 16 35 H 0.09 0.94 8.08 -2.39 -0.02 0.92 16 36 H 0.09 0.94 8.09 -2.39 -0.02 0.92 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.42 7.44 7.94 -92.70 -0.74 6.71 16 40 H 0.41 14.71 7.94 -92.71 -0.74 13.97 16 41 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 42 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 43 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 45 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 46 H 0.13 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -67.85 395.11 1.64 -66.21 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -0.49 Total: 23.27 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 5.08 Total: 3.11 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -4.87 Total: -99.45 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -0.11 Total: -38.53 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -67.85 1.64 -66.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323359436.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.395 kcal (2) G-P(sol) polarization free energy of solvation -67.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds