Wall clock time and date at job start Tue Mar 31 2020 11:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00090 * 2 1 4 4 H 1.48505 * 109.46869 * 270.00136 * 3 2 1 5 5 H 1.48497 * 109.47232 * 29.99833 * 3 2 1 6 6 H 1.48498 * 109.47188 * 150.00497 * 3 2 1 7 7 C 1.37872 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00461 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00153 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47242 * 179.97438 * 9 7 2 11 11 O 1.45194 * 109.47117 * 179.97438 * 10 9 7 12 12 C 1.34233 * 117.00534 * 180.02562 * 11 10 9 13 13 O 1.20830 * 119.99240 * 0.02562 * 12 11 10 14 14 C 1.50691 * 120.00566 * 180.02562 * 12 11 10 15 15 H 1.08999 * 109.45398 * 328.80245 * 14 12 11 16 16 C 1.53042 * 109.46383 * 88.77558 * 14 12 11 17 17 C 1.53121 * 109.27503 * 179.19558 * 16 14 12 18 18 C 1.53116 * 109.16505 * 302.34345 * 17 16 14 19 19 C 1.53043 * 109.27691 * 57.65764 * 18 17 16 20 20 N 1.46846 * 109.52240 * 300.82440 * 19 18 17 21 21 C 1.46900 * 111.00069 * 185.84072 * 20 19 18 22 22 C 1.50695 * 109.47284 * 75.73629 * 21 20 19 23 23 C 1.38667 * 120.42208 * 270.30382 * 22 21 20 24 24 C 1.38634 * 118.42227 * 180.30854 * 23 22 21 25 25 C 1.38225 * 119.15753 * 359.43531 * 24 23 22 26 26 N 1.31859 * 120.76491 * 0.26045 * 25 24 23 27 27 C 1.31876 * 121.72470 * 0.02562 * 26 25 24 28 28 H 0.96998 * 119.99933 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46973 * 60.00056 * 9 7 2 30 30 H 1.08997 * 109.46888 * 300.00145 * 9 7 2 31 31 H 1.08999 * 109.46818 * 60.00295 * 10 9 7 32 32 H 1.08997 * 109.47570 * 300.00061 * 10 9 7 33 33 H 1.09002 * 109.50054 * 59.25771 * 16 14 12 34 34 H 1.08993 * 109.53220 * 299.15809 * 16 14 12 35 35 H 1.09009 * 109.51536 * 182.44219 * 17 16 14 36 36 H 1.08994 * 109.57706 * 62.28879 * 17 16 14 37 37 H 1.09003 * 109.50647 * 297.72150 * 18 17 16 38 38 H 1.08993 * 109.53463 * 177.61845 * 18 17 16 39 39 H 1.08995 * 109.46146 * 180.80551 * 19 18 17 40 40 H 1.09001 * 109.45304 * 60.82973 * 19 18 17 41 41 H 1.09000 * 109.46920 * 315.73810 * 21 20 19 42 42 H 1.09003 * 109.47218 * 195.73912 * 21 20 19 43 43 H 1.07997 * 120.79199 * 0.02562 * 23 22 21 44 44 H 1.07995 * 120.42398 * 179.71321 * 24 23 22 45 45 H 1.08007 * 119.61765 * 180.27621 * 25 24 23 46 46 H 1.08002 * 119.61480 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 8 1.5192 -4.9195 0.0032 12 6 2.2502 -6.0454 0.0037 13 8 3.4569 -5.9821 0.0033 14 6 1.5661 -7.3880 0.0049 15 1 0.6182 -7.3120 0.5376 16 6 1.3066 -7.8294 -1.4373 17 6 0.6297 -9.2029 -1.4315 18 6 1.5224 -10.2001 -0.6879 19 6 1.7757 -9.6900 0.7326 20 7 2.4249 -8.3742 0.6730 21 6 2.8084 -7.9152 2.0147 22 6 4.0347 -8.6634 2.4702 23 6 3.9113 -9.8577 3.1638 24 6 5.0667 -10.5081 3.5687 25 6 6.2948 -9.9543 3.2594 26 7 6.3743 -8.8196 2.5925 27 6 5.2965 -8.1709 2.1966 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5575 -0.8880 30 1 0.6247 -2.5563 0.8919 31 1 2.8725 -3.6039 0.8910 32 1 2.8712 -3.6048 -0.8890 33 1 2.2530 -7.8924 -1.9744 34 1 0.6567 -7.1054 -1.9286 35 1 0.4823 -9.5405 -2.4574 36 1 -0.3350 -9.1325 -0.9291 37 1 2.4722 -10.3004 -1.2132 38 1 1.0270 -11.1700 -0.6434 39 1 2.4227 -10.3908 1.2601 40 1 0.8266 -9.6031 1.2617 41 1 1.9900 -8.1014 2.7102 42 1 3.0244 -6.8472 1.9854 43 1 2.9381 -10.2692 3.3873 44 1 5.0081 -11.4379 4.1149 45 1 7.1998 -10.4571 3.5673 46 1 5.4013 -7.2442 1.6519 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324175233.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:00 Heat of formation + Delta-G solvation = -58.630676 kcal Electronic energy + Delta-G solvation = -26705.506877 eV Core-core repulsion = 22980.618829 eV Total energy + Delta-G solvation = -3724.888048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.82682 -40.05217 -38.56392 -36.03524 -34.66056 -33.36864 -32.41875 -31.63983 -31.24107 -30.18167 -26.96148 -25.47320 -24.17841 -23.88712 -23.41028 -21.75268 -21.19227 -20.56631 -19.78245 -17.54770 -17.20892 -16.63188 -16.54237 -16.14510 -16.10062 -15.56450 -15.21086 -14.75779 -14.53852 -14.38410 -14.10810 -13.99145 -13.65793 -13.28685 -13.26652 -13.12386 -12.83539 -12.50383 -12.37155 -12.30359 -11.62181 -11.55887 -11.26310 -11.11554 -11.03142 -10.95774 -10.74566 -10.68882 -10.64270 -10.10545 -9.94786 -9.66752 -9.59035 -9.55362 -9.31027 -9.12582 -8.58742 -8.46097 -6.12201 -4.16627 0.97016 1.13476 2.48538 2.91817 3.27785 3.33928 3.38085 3.52881 3.92920 4.32421 4.37417 4.51236 4.54201 4.60790 4.68231 4.73955 4.82369 4.85816 4.91728 5.02571 5.13558 5.19904 5.24554 5.27190 5.30306 5.43165 5.49334 5.57623 5.63896 5.69579 5.74517 5.85456 5.91890 5.92637 6.05526 6.07146 6.10610 6.13477 6.57843 6.60615 6.67217 6.75745 6.96691 7.53717 7.59478 7.85038 7.89754 8.17545 8.25182 8.88990 9.48060 10.99301 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013899 B = 0.003000 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.069155 B = 9332.457160 C =10880.494300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.076 3.924 11 O -0.358 6.358 12 C 0.456 3.544 13 O -0.496 6.496 14 C 0.097 3.903 15 H 0.074 0.926 16 C -0.108 4.108 17 C -0.118 4.118 18 C -0.118 4.118 19 C 0.056 3.944 20 N -0.514 5.514 21 C 0.090 3.910 22 C -0.119 4.119 23 C -0.073 4.073 24 C -0.178 4.178 25 C 0.093 3.907 26 N -0.486 5.486 27 C 0.128 3.872 28 H 0.263 0.737 29 H 0.028 0.972 30 H 0.027 0.973 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.038 0.962 41 H 0.050 0.950 42 H 0.092 0.908 43 H 0.129 0.871 44 H 0.132 0.868 45 H 0.152 0.848 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.482 -25.068 3.650 25.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.274 6.274 12 C 0.297 3.703 13 O -0.384 6.384 14 C -0.013 4.013 15 H 0.092 0.908 16 C -0.146 4.146 17 C -0.156 4.156 18 C -0.156 4.156 19 C -0.072 4.072 20 N -0.240 5.240 21 C -0.038 4.038 22 C -0.122 4.122 23 C -0.099 4.099 24 C -0.198 4.198 25 C -0.064 4.064 26 N -0.194 5.194 27 C -0.029 4.029 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.110 0.890 43 H 0.147 0.853 44 H 0.150 0.850 45 H 0.169 0.831 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.929 -24.555 3.175 25.070 hybrid contribution -1.016 0.710 0.722 1.434 sum 2.913 -23.845 3.897 24.337 Atomic orbital electron populations 1.69972 1.06103 1.27008 1.49800 1.24979 0.94913 0.99398 0.94833 0.86474 0.79797 0.82796 0.78281 1.20452 1.21049 1.19674 1.20981 0.93195 0.90103 1.52192 0.92234 1.19164 0.94169 0.89043 0.98822 1.23648 0.96366 0.78669 1.00967 1.86533 1.42568 1.15793 1.82544 1.23242 0.86744 0.86884 0.73438 1.90628 1.15418 1.87999 1.44353 1.21218 0.94688 0.87033 0.98330 0.90814 1.21564 1.02370 0.97598 0.93033 1.21573 0.98520 0.94370 1.01096 1.21619 1.00658 0.98159 0.95185 1.22209 0.97151 0.90007 0.97786 1.61634 1.42142 1.01867 1.18391 1.21083 0.93887 1.00105 0.88734 1.20651 0.96405 0.96165 0.98946 1.21478 0.98951 0.93902 0.95597 1.22067 0.93608 1.01645 1.02497 1.22782 0.97344 0.91963 0.94299 1.67776 1.33287 1.08042 1.10310 1.22859 0.86948 0.98966 0.94106 0.92701 0.95373 0.95429 0.92350 0.92221 0.90163 0.89988 0.91027 0.91721 0.90834 0.91262 0.90155 0.94409 0.93228 0.88980 0.85295 0.85037 0.83056 0.82126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 7 C -0.53 -14.74 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.03 0.65 5.35 -27.88 -0.15 0.50 16 10 C 0.08 1.67 5.40 37.16 0.20 1.87 16 11 O -0.36 -6.99 10.22 -39.27 -0.40 -7.39 16 12 C 0.46 7.70 5.76 36.00 0.21 7.91 16 13 O -0.50 -9.40 15.19 -18.75 -0.28 -9.69 16 14 C 0.10 1.23 2.34 -68.88 -0.16 1.07 16 15 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 16 C -0.11 -1.18 5.36 -26.65 -0.14 -1.32 16 17 C -0.12 -0.97 6.00 -26.61 -0.16 -1.13 16 18 C -0.12 -0.94 6.09 -26.65 -0.16 -1.10 16 19 C 0.06 0.49 5.26 -3.83 -0.02 0.47 16 20 N -0.51 -6.00 4.17 -229.52 -0.96 -6.96 16 21 C 0.09 1.06 4.77 -4.98 -0.02 1.04 16 22 C -0.12 -1.38 5.16 -104.48 -0.54 -1.92 16 23 C -0.07 -0.67 8.44 -39.28 -0.33 -1.00 16 24 C -0.18 -1.52 10.11 -39.44 -0.40 -1.92 16 25 C 0.09 0.95 11.18 -17.54 -0.20 0.76 16 26 N -0.49 -6.49 10.36 -13.25 -0.14 -6.63 16 27 C 0.13 1.73 10.86 -17.55 -0.19 1.54 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 1.27 8.13 -51.93 -0.42 0.84 16 32 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.66 6.05 -51.93 -0.31 0.35 16 40 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.05 0.50 7.95 -51.93 -0.41 0.09 16 42 H 0.09 1.31 5.63 -51.93 -0.29 1.02 16 43 H 0.13 0.89 7.76 -52.49 -0.41 0.48 16 44 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 45 H 0.15 1.12 8.06 -52.48 -0.42 0.69 16 46 H 0.16 2.35 8.06 -52.49 -0.42 1.92 16 LS Contribution 376.05 15.07 5.67 5.67 Total: -1.00 -31.84 376.05 -10.19 -42.03 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -7.31 Total: -1.17 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -2.48 Total: -6.68 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: -0.36 Total: -39.12 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.69 Total: -17.07 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.84 -10.19 -42.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324175233.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.601 kcal (2) G-P(sol) polarization free energy of solvation -31.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds