Wall clock time and date at job start Tue Mar 31 2020 11:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00090 * 2 1 4 4 H 1.48505 * 109.46869 * 270.00136 * 3 2 1 5 5 H 1.48497 * 109.47232 * 29.99833 * 3 2 1 6 6 H 1.48498 * 109.47188 * 150.00497 * 3 2 1 7 7 C 1.37872 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00461 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00153 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47242 * 179.97438 * 9 7 2 11 11 O 1.45194 * 109.47117 * 179.97438 * 10 9 7 12 12 C 1.34233 * 117.00534 * 180.02562 * 11 10 9 13 13 O 1.20830 * 119.99240 * 0.02562 * 12 11 10 14 14 C 1.50691 * 120.00566 * 180.02562 * 12 11 10 15 15 H 1.08999 * 109.45398 * 328.80245 * 14 12 11 16 16 C 1.53042 * 109.46383 * 88.77558 * 14 12 11 17 17 C 1.53121 * 109.27503 * 179.19558 * 16 14 12 18 18 C 1.53116 * 109.16505 * 302.34345 * 17 16 14 19 19 C 1.53043 * 109.27691 * 57.65764 * 18 17 16 20 20 N 1.46846 * 109.52240 * 300.82440 * 19 18 17 21 21 C 1.46900 * 111.00069 * 185.84072 * 20 19 18 22 22 C 1.50695 * 109.47284 * 75.73629 * 21 20 19 23 23 C 1.38667 * 120.42208 * 270.30382 * 22 21 20 24 24 C 1.38634 * 118.42227 * 180.30854 * 23 22 21 25 25 C 1.38225 * 119.15753 * 359.43531 * 24 23 22 26 26 N 1.31859 * 120.76491 * 0.26045 * 25 24 23 27 27 C 1.31876 * 121.72470 * 0.02562 * 26 25 24 28 28 H 0.96998 * 119.99933 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46973 * 60.00056 * 9 7 2 30 30 H 1.08997 * 109.46888 * 300.00145 * 9 7 2 31 31 H 1.08999 * 109.46818 * 60.00295 * 10 9 7 32 32 H 1.08997 * 109.47570 * 300.00061 * 10 9 7 33 33 H 1.09002 * 109.50054 * 59.25771 * 16 14 12 34 34 H 1.08993 * 109.53220 * 299.15809 * 16 14 12 35 35 H 1.09009 * 109.51536 * 182.44219 * 17 16 14 36 36 H 1.08994 * 109.57706 * 62.28879 * 17 16 14 37 37 H 1.09003 * 109.50647 * 297.72150 * 18 17 16 38 38 H 1.08993 * 109.53463 * 177.61845 * 18 17 16 39 39 H 1.08995 * 109.46146 * 180.80551 * 19 18 17 40 40 H 1.09001 * 109.45304 * 60.82973 * 19 18 17 41 41 H 1.09000 * 109.46920 * 315.73810 * 21 20 19 42 42 H 1.09003 * 109.47218 * 195.73912 * 21 20 19 43 43 H 1.07997 * 120.79199 * 0.02562 * 23 22 21 44 44 H 1.07995 * 120.42398 * 179.71321 * 24 23 22 45 45 H 1.08007 * 119.61765 * 180.27621 * 25 24 23 46 46 H 1.08002 * 119.61480 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 8 1.5192 -4.9195 0.0032 12 6 2.2502 -6.0454 0.0037 13 8 3.4569 -5.9821 0.0033 14 6 1.5661 -7.3880 0.0049 15 1 0.6182 -7.3120 0.5376 16 6 1.3066 -7.8294 -1.4373 17 6 0.6297 -9.2029 -1.4315 18 6 1.5224 -10.2001 -0.6879 19 6 1.7757 -9.6900 0.7326 20 7 2.4249 -8.3742 0.6730 21 6 2.8084 -7.9152 2.0147 22 6 4.0347 -8.6634 2.4702 23 6 3.9113 -9.8577 3.1638 24 6 5.0667 -10.5081 3.5687 25 6 6.2948 -9.9543 3.2594 26 7 6.3743 -8.8196 2.5925 27 6 5.2965 -8.1709 2.1966 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5575 -0.8880 30 1 0.6247 -2.5563 0.8919 31 1 2.8725 -3.6039 0.8910 32 1 2.8712 -3.6048 -0.8890 33 1 2.2530 -7.8924 -1.9744 34 1 0.6567 -7.1054 -1.9286 35 1 0.4823 -9.5405 -2.4574 36 1 -0.3350 -9.1325 -0.9291 37 1 2.4722 -10.3004 -1.2132 38 1 1.0270 -11.1700 -0.6434 39 1 2.4227 -10.3908 1.2601 40 1 0.8266 -9.6031 1.2617 41 1 1.9900 -8.1014 2.7102 42 1 3.0244 -6.8472 1.9854 43 1 2.9381 -10.2692 3.3873 44 1 5.0081 -11.4379 4.1149 45 1 7.1998 -10.4571 3.5673 46 1 5.4013 -7.2442 1.6519 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324175233.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:59 Heat of formation + Delta-G solvation = -77.291049 kcal Electronic energy + Delta-G solvation = -26706.316051 eV Core-core repulsion = 22980.618829 eV Total energy + Delta-G solvation = -3725.697222 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.98845 -41.05288 -39.62119 -37.57624 -35.54614 -35.41312 -33.23943 -32.73048 -32.15475 -31.88922 -27.88137 -27.20183 -25.44611 -24.73387 -24.20469 -23.07990 -22.54353 -21.86223 -20.69225 -19.07357 -18.22683 -17.99286 -17.79735 -17.62907 -17.23801 -16.64528 -16.46344 -16.29339 -15.56328 -15.30919 -15.10729 -14.86677 -14.78312 -14.41933 -14.35881 -14.10078 -14.05169 -13.97701 -13.55874 -13.29681 -13.05125 -13.02690 -12.63399 -12.62321 -12.42372 -12.32501 -12.00777 -11.77987 -11.65348 -11.51036 -11.48633 -11.36753 -11.10533 -10.74365 -10.63447 -10.39949 -9.96124 -9.43423 -8.29358 -6.42605 0.15384 0.35267 1.11005 1.39042 1.41152 1.51295 1.60629 2.37691 2.61682 3.05047 3.05544 3.49668 3.57414 3.69814 3.76932 3.84125 3.94837 4.03752 4.07809 4.09678 4.16003 4.18308 4.19905 4.26679 4.43746 4.47151 4.55002 4.65997 4.72076 4.74909 4.78399 4.87154 4.94192 5.02308 5.15321 5.18122 5.20875 5.24655 5.31230 5.43538 5.44397 5.51025 5.71472 5.73946 5.82229 5.98943 6.04311 6.69538 6.75415 7.05658 7.27307 8.83256 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013899 B = 0.003000 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.069155 B = 9332.457160 C =10880.494300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.552 4.552 8 H 0.063 0.937 9 C 0.033 3.967 10 C 0.093 3.907 11 O -0.366 6.366 12 C 0.453 3.547 13 O -0.520 6.520 14 C 0.105 3.895 15 H 0.089 0.911 16 C -0.107 4.107 17 C -0.111 4.111 18 C -0.115 4.115 19 C 0.054 3.946 20 N -0.528 5.528 21 C 0.093 3.907 22 C -0.125 4.125 23 C -0.068 4.068 24 C -0.163 4.163 25 C 0.081 3.919 26 N -0.519 5.519 27 C 0.098 3.902 28 H 0.268 0.732 29 H 0.007 0.993 30 H 0.007 0.993 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.162 0.838 44 H 0.172 0.828 45 H 0.178 0.822 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.009 -27.658 4.552 28.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.796 3.204 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.589 4.589 8 H 0.081 0.919 9 C -0.004 4.004 10 C 0.019 3.981 11 O -0.283 6.283 12 C 0.296 3.704 13 O -0.408 6.408 14 C -0.004 4.004 15 H 0.106 0.894 16 C -0.145 4.145 17 C -0.149 4.149 18 C -0.153 4.153 19 C -0.072 4.072 20 N -0.254 5.254 21 C -0.035 4.035 22 C -0.127 4.127 23 C -0.094 4.094 24 C -0.182 4.182 25 C -0.076 4.076 26 N -0.228 5.228 27 C -0.058 4.058 28 H 0.077 0.923 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.115 0.885 39 H 0.108 0.892 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.179 0.821 44 H 0.190 0.810 45 H 0.195 0.805 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.456 -27.170 4.070 27.689 hybrid contribution -0.841 1.395 0.474 1.696 sum 2.615 -25.775 4.545 26.303 Atomic orbital electron populations 1.70087 1.07756 1.28316 1.50325 1.25939 0.95844 1.03330 0.94016 0.85344 0.78541 0.77835 0.78728 1.19486 1.20225 1.18863 1.21367 0.93639 0.91314 1.52611 0.91890 1.18960 0.94261 0.90504 0.96695 1.23125 0.95037 0.79151 1.00743 1.86521 1.42765 1.15808 1.83169 1.24251 0.86707 0.87407 0.72031 1.90623 1.16671 1.88191 1.45352 1.21308 0.94662 0.84513 0.99933 0.89380 1.21609 1.01889 0.99627 0.91415 1.21570 0.98715 0.92271 1.02327 1.21630 1.00168 0.99225 0.94273 1.22363 0.97904 0.88165 0.98807 1.61649 1.42722 1.02735 1.18330 1.20994 0.94794 0.98225 0.89460 1.20615 0.95141 0.97312 0.99674 1.21828 1.00830 0.92557 0.94170 1.22490 0.92387 1.02369 1.00994 1.23337 0.99513 0.91102 0.93629 1.67683 1.33655 1.09751 1.11745 1.22542 0.88394 0.98924 0.95934 0.92269 0.97450 0.97496 0.92493 0.92428 0.91808 0.90302 0.89673 0.90371 0.92248 0.88518 0.89160 0.92658 0.91129 0.92467 0.82065 0.81039 0.80484 0.85273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.60 13.29 21.45 0.28 -55.31 16 2 C 0.01 0.45 5.46 84.65 0.46 0.91 16 3 Si 0.97 44.03 29.54 68.60 2.03 46.05 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.55 -31.69 9.11 25.60 0.23 -31.46 16 8 H 0.06 3.49 7.74 -2.91 -0.02 3.46 16 9 C 0.03 1.79 5.35 29.85 0.16 1.95 16 10 C 0.09 4.27 5.40 71.98 0.39 4.65 16 11 O -0.37 -14.92 10.22 -51.44 -0.53 -15.44 16 12 C 0.45 15.99 5.76 71.23 0.41 16.40 16 13 O -0.52 -20.98 15.19 21.95 0.33 -20.64 16 14 C 0.11 2.64 2.34 44.19 0.10 2.75 16 15 H 0.09 1.96 8.14 -2.39 -0.02 1.95 16 16 C -0.11 -2.30 5.36 30.65 0.16 -2.13 16 17 C -0.11 -1.55 6.00 30.67 0.18 -1.36 16 18 C -0.12 -1.48 6.09 30.65 0.19 -1.29 16 19 C 0.05 0.79 5.26 86.33 0.45 1.24 16 20 N -0.53 -11.92 4.17 -880.06 -3.67 -15.59 16 21 C 0.09 2.19 4.77 85.56 0.41 2.60 16 22 C -0.12 -2.86 5.16 -19.78 -0.10 -2.96 16 23 C -0.07 -1.05 8.44 22.47 0.19 -0.86 16 24 C -0.16 -2.22 10.11 22.36 0.23 -2.00 16 25 C 0.08 1.53 11.18 84.69 0.95 2.47 16 26 N -0.52 -14.23 10.36 -195.83 -2.03 -16.26 16 27 C 0.10 2.83 10.86 84.67 0.92 3.75 16 28 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 29 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.06 2.61 8.13 -2.39 -0.02 2.59 16 32 H 0.06 2.64 8.13 -2.39 -0.02 2.62 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.09 1.16 6.05 -2.39 -0.01 1.15 16 40 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.07 1.32 7.95 -2.39 -0.02 1.30 16 42 H 0.06 1.74 5.63 -2.39 -0.01 1.72 16 43 H 0.16 1.44 7.76 -2.91 -0.02 1.41 16 44 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 45 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 46 H 0.13 4.34 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -72.53 376.05 2.71 -69.82 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.95 Total: 12.71 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 5.34 Total: -5.33 kcal Atomic # 7 Polarization: -81.75 SS G_CDS: -5.42 Total: -87.16 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -0.19 Total: -36.08 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -72.53 2.71 -69.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324175233.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.473 kcal (2) G-P(sol) polarization free energy of solvation -72.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds