Wall clock time and date at job start Tue Mar 31 2020 12:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 120.00004 * 2 1 4 4 O 1.21589 * 119.99783 * 179.97438 * 3 2 1 5 5 N 1.34772 * 119.99891 * 359.97438 * 3 2 1 6 6 C 1.40033 * 119.99647 * 175.52295 * 5 3 2 7 7 C 1.38915 * 120.00002 * 214.84997 * 6 5 3 8 8 C 1.38001 * 119.99887 * 179.80948 * 7 6 5 9 9 C 1.38899 * 120.00263 * 0.44721 * 8 7 6 10 10 O 1.35789 * 120.00307 * 179.76246 * 9 8 7 11 11 C 1.34809 * 117.00281 * 185.35289 * 10 9 8 12 12 H 1.08006 * 119.99981 * 354.96963 * 11 10 9 13 13 C 1.38625 * 120.00202 * 174.96431 * 11 10 9 14 14 N 1.31580 * 119.99914 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00112 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47150 * 90.00270 * 15 13 11 17 17 H 1.48504 * 109.47166 * 210.00306 * 15 13 11 18 18 H 1.48502 * 109.47442 * 329.99895 * 15 13 11 19 19 C 1.38900 * 120.00178 * 359.78659 * 9 8 7 20 20 C 1.38009 * 120.00154 * 359.97438 * 19 9 8 21 21 C 1.46498 * 119.99849 * 180.02562 * 2 1 3 22 22 C 1.53773 * 113.61918 * 59.99477 * 21 2 1 23 23 C 1.53773 * 87.08573 * 219.93742 * 22 21 2 24 24 C 1.53000 * 113.61946 * 139.98199 * 23 22 21 25 25 C 1.53009 * 113.61593 * 270.80019 * 23 22 21 26 26 C 1.53777 * 87.17252 * 25.38857 * 23 22 21 27 27 H 1.08997 * 109.47030 * 270.00206 * 1 2 3 28 28 H 1.09006 * 109.47261 * 29.99809 * 1 2 3 29 29 H 1.08993 * 109.47340 * 149.99704 * 1 2 3 30 30 H 0.96993 * 120.00337 * 355.52585 * 5 3 2 31 31 H 1.08007 * 119.99652 * 0.02562 * 7 6 5 32 32 H 1.08003 * 119.99923 * 180.18260 * 8 7 6 33 33 H 0.96997 * 120.00123 * 180.02562 * 14 13 11 34 34 H 1.08006 * 120.00474 * 179.97438 * 19 9 8 35 35 H 1.07999 * 120.00312 * 179.97438 * 20 19 9 36 36 H 1.09005 * 112.84666 * 191.19600 * 21 2 1 37 37 H 1.09004 * 113.61463 * 105.38608 * 22 21 2 38 38 H 1.09005 * 113.61559 * 334.48772 * 22 21 2 39 39 H 1.08998 * 109.47524 * 181.52993 * 24 23 22 40 40 H 1.09003 * 109.46862 * 301.52976 * 24 23 22 41 41 H 1.09000 * 109.46757 * 61.52436 * 24 23 22 42 42 H 1.08993 * 109.47012 * 298.47324 * 25 23 22 43 43 H 1.09002 * 109.46648 * 58.47018 * 25 23 22 44 44 H 1.08993 * 109.47021 * 178.46401 * 25 23 22 45 45 H 1.09003 * 113.61261 * 89.16074 * 26 23 22 46 46 H 1.09000 * 113.61916 * 220.06033 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3548 1.1672 0.0005 5 7 1.4650 2.3344 -0.0005 6 6 2.1620 3.5452 0.0941 7 6 1.6073 4.6136 0.7875 8 6 2.2959 5.8056 0.8841 9 6 3.5395 5.9402 0.2802 10 8 4.2150 7.1147 0.3712 11 6 5.3628 7.2164 -0.3283 12 1 5.7485 6.3595 -0.8607 13 6 6.0481 8.4209 -0.3645 14 7 5.5784 9.4648 0.2843 15 14 7.6382 8.5620 -1.3345 16 1 7.3334 8.9785 -2.7269 17 1 8.5190 9.5735 -0.6968 18 1 8.3267 7.2463 -1.3508 19 6 4.0921 4.8736 -0.4172 20 6 3.4057 3.6799 -0.5097 21 6 2.1975 -1.2687 -0.0006 22 6 1.8953 -2.1540 -1.2210 23 6 1.9150 -3.3527 -0.2580 24 6 0.8285 -4.3901 -0.5481 25 6 3.3012 -3.9768 -0.0845 26 6 1.5405 -2.3642 0.8588 27 1 -0.3633 0.0000 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5138 30 1 0.4973 2.3357 -0.0664 31 1 0.6386 4.5101 1.2538 32 1 1.8660 6.6352 1.4256 33 1 6.0577 10.3077 0.2587 34 1 5.0589 4.9784 -0.8871 35 1 3.8352 2.8507 -1.0523 36 1 3.2625 -1.1427 0.1945 37 1 2.6991 -2.1720 -1.9571 38 1 0.9176 -1.9667 -1.6651 39 1 0.8867 -5.1926 0.1872 40 1 -0.1512 -3.9157 -0.4914 41 1 0.9760 -4.8009 -1.5469 42 1 3.6528 -4.3536 -1.0449 43 1 3.9954 -3.2226 0.2861 44 1 3.2429 -4.7987 0.6290 45 1 0.4655 -2.2344 0.9847 46 1 2.0581 -2.5516 1.7996 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324700293.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:08 Heat of formation + Delta-G solvation = 0.130299 kcal Electronic energy + Delta-G solvation = -26144.285109 eV Core-core repulsion = 22421.945129 eV Total energy + Delta-G solvation = -3722.339981 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.92703 -39.63439 -38.57366 -36.53015 -35.07563 -33.78478 -32.11688 -30.32870 -30.13296 -27.93152 -27.68081 -27.05543 -26.04263 -25.23133 -23.07475 -22.08515 -20.99717 -19.58832 -18.71067 -18.35758 -17.80419 -17.05956 -16.68101 -15.98342 -15.54210 -15.17524 -14.56065 -14.45509 -14.36134 -14.00687 -13.60664 -13.54881 -13.47985 -13.40474 -13.11504 -13.06542 -12.81423 -12.57083 -12.46336 -12.25812 -11.89858 -11.74613 -11.60805 -11.46627 -11.41195 -11.15147 -10.97337 -10.70973 -10.50384 -10.45871 -10.39469 -9.85587 -9.62626 -9.13318 -8.75683 -8.60252 -8.13797 -6.85804 -6.39469 -3.96884 2.19977 2.30328 2.64467 3.16373 3.18477 3.23370 3.32689 3.93094 4.02557 4.11112 4.21970 4.44036 4.57611 4.64867 4.76352 4.88907 5.12763 5.14605 5.16665 5.23962 5.26944 5.31651 5.32686 5.40167 5.48575 5.52951 5.59203 5.66713 5.72410 5.75661 5.81274 5.82540 5.94377 6.11293 6.19255 6.24574 6.30080 6.50188 6.76115 6.79967 7.02315 7.16366 7.21414 7.39782 7.50538 7.85322 8.02132 8.06401 8.70873 9.06585 9.76773 10.78663 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024941 B = 0.002365 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.366063 B =11837.351065 C =12705.060908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.624 5.624 3 C 0.701 3.299 4 O -0.574 6.574 5 N -0.675 5.675 6 C 0.052 3.948 7 C -0.095 4.095 8 C -0.178 4.178 9 C 0.145 3.855 10 O -0.178 6.178 11 C -0.389 4.389 12 H 0.092 0.908 13 C 0.038 3.962 14 N -0.864 5.864 15 Si 0.940 3.060 16 H -0.274 1.274 17 H -0.278 1.278 18 H -0.267 1.267 19 C -0.219 4.219 20 C -0.064 4.064 21 C 0.143 3.857 22 C -0.145 4.145 23 C -0.087 4.087 24 C -0.132 4.132 25 C -0.131 4.131 26 C -0.142 4.142 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.397 0.603 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.269 0.731 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.120 0.880 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.086 0.914 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.287 -24.728 -1.589 27.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.361 5.361 3 C 0.403 3.597 4 O -0.451 6.451 5 N -0.323 5.323 6 C -0.041 4.041 7 C -0.116 4.116 8 C -0.198 4.198 9 C 0.091 3.909 10 O -0.082 6.082 11 C -0.465 4.465 12 H 0.109 0.891 13 C -0.166 4.166 14 N -0.500 5.500 15 Si 0.765 3.235 16 H -0.199 1.199 17 H -0.203 1.203 18 H -0.192 1.192 19 C -0.239 4.239 20 C -0.084 4.084 21 C 0.038 3.962 22 C -0.184 4.184 23 C -0.087 4.087 24 C -0.190 4.190 25 C -0.188 4.188 26 C -0.181 4.181 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.232 0.768 31 H 0.131 0.869 32 H 0.139 0.861 33 H 0.079 0.921 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.138 0.862 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.104 0.896 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.370 -24.276 -1.405 26.844 hybrid contribution 0.144 0.023 -0.514 0.535 sum -11.226 -24.253 -1.919 26.794 Atomic orbital electron populations 1.21673 0.80374 1.02803 1.01702 1.47003 1.05943 1.04687 1.78438 1.15927 0.85464 0.80251 0.78024 1.90914 1.11411 1.85695 1.57038 1.42474 1.09409 1.03529 1.76905 1.17069 0.95871 0.85039 1.06085 1.20315 0.99635 0.92649 0.99006 1.19960 0.94432 0.98189 1.07175 1.19403 0.91187 0.86976 0.93337 1.83973 1.34251 1.28933 1.61039 1.21327 0.97842 0.98185 1.29175 0.89064 1.25273 0.99537 0.94264 0.97515 1.70049 1.38924 1.01381 1.39621 0.85719 0.80021 0.78651 0.79105 1.19920 1.20312 1.19167 1.21112 1.02504 0.93300 1.07004 1.20885 0.93621 0.96757 0.97146 1.22468 0.97836 0.79876 0.95978 1.23586 1.02477 0.95026 0.97318 1.21618 0.96318 0.93906 0.96886 1.21690 0.97421 0.98332 1.01511 1.21629 0.94620 1.00679 1.01901 1.23611 1.01394 0.95105 0.97963 0.92588 0.91510 0.90790 0.76755 0.86885 0.86097 0.92114 0.85256 0.85595 0.86170 0.90924 0.89828 0.92561 0.92659 0.92510 0.92209 0.92054 0.92301 0.89594 0.90880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.55 8.86 59.85 0.53 1.08 16 2 N -0.62 -6.97 3.08 -178.63 -0.55 -7.52 16 3 C 0.70 10.92 8.12 -86.92 -0.71 10.22 16 4 O -0.57 -11.34 13.26 5.29 0.07 -11.27 16 5 N -0.67 -9.90 5.22 -14.18 -0.07 -9.97 16 6 C 0.05 0.97 6.30 -83.61 -0.53 0.44 16 7 C -0.10 -1.72 9.96 -39.42 -0.39 -2.11 16 8 C -0.18 -3.78 9.98 -39.42 -0.39 -4.18 16 9 C 0.14 3.60 6.65 -39.09 -0.26 3.34 16 10 O -0.18 -5.19 9.76 -0.01 0.00 -5.19 16 11 C -0.39 -11.13 9.48 30.88 0.29 -10.84 16 12 H 0.09 2.44 5.20 -52.48 -0.27 2.17 16 13 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 14 N -0.86 -25.71 13.67 55.48 0.76 -24.95 16 15 Si 0.94 21.05 29.55 -169.99 -5.02 16.02 16 16 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 17 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 19 C -0.22 -5.11 9.16 -39.42 -0.36 -5.47 16 20 C -0.06 -1.35 8.69 -39.42 -0.34 -1.69 16 21 C 0.14 1.45 3.85 -67.03 -0.26 1.19 16 22 C -0.15 -1.18 6.77 -25.93 -0.18 -1.36 16 23 C -0.09 -0.59 1.39 -153.70 -0.21 -0.81 16 24 C -0.13 -0.74 9.18 37.16 0.34 -0.40 16 25 C -0.13 -0.89 9.07 37.16 0.34 -0.55 16 26 C -0.14 -1.08 6.65 -25.83 -0.17 -1.25 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.41 6.30 -51.93 -0.33 0.08 16 29 H 0.07 0.40 6.35 -51.93 -0.33 0.07 16 30 H 0.40 4.33 6.52 -40.82 -0.27 4.06 16 31 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 32 H 0.12 2.44 8.06 -52.48 -0.42 2.01 16 33 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.13 3.03 5.63 -52.48 -0.30 2.74 16 35 H 0.13 2.67 6.22 -52.49 -0.33 2.34 16 36 H 0.12 1.51 6.73 -51.93 -0.35 1.16 16 37 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 38 H 0.08 0.62 6.88 -51.93 -0.36 0.26 16 39 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.05 0.28 7.98 -51.93 -0.41 -0.13 16 41 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.47 7.34 -51.93 -0.38 0.08 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.09 0.57 6.59 -51.93 -0.34 0.22 16 46 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 LS Contribution 368.52 15.07 5.55 5.55 Total: -1.00 -33.89 368.52 -8.26 -42.15 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.60 Total: 6.57 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -2.40 Total: -11.41 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.13 Total: -42.44 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: 0.07 Total: -16.45 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.89 -8.26 -42.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324700293.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.282 kcal (2) G-P(sol) polarization free energy of solvation -33.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds