Wall clock time and date at job start Tue Mar 31 2020 12:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 120.00004 * 2 1 4 4 O 1.21589 * 119.99783 * 179.97438 * 3 2 1 5 5 N 1.34772 * 119.99891 * 359.97438 * 3 2 1 6 6 C 1.40033 * 119.99647 * 175.52295 * 5 3 2 7 7 C 1.38915 * 120.00002 * 214.84997 * 6 5 3 8 8 C 1.38001 * 119.99887 * 179.80948 * 7 6 5 9 9 C 1.38899 * 120.00263 * 0.44721 * 8 7 6 10 10 O 1.35789 * 120.00307 * 179.76246 * 9 8 7 11 11 C 1.34809 * 117.00281 * 185.35289 * 10 9 8 12 12 H 1.08006 * 119.99981 * 354.96963 * 11 10 9 13 13 C 1.38625 * 120.00202 * 174.96431 * 11 10 9 14 14 N 1.31580 * 119.99914 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00112 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47150 * 90.00270 * 15 13 11 17 17 H 1.48504 * 109.47166 * 210.00306 * 15 13 11 18 18 H 1.48502 * 109.47442 * 329.99895 * 15 13 11 19 19 C 1.38900 * 120.00178 * 359.78659 * 9 8 7 20 20 C 1.38009 * 120.00154 * 359.97438 * 19 9 8 21 21 C 1.46498 * 119.99849 * 180.02562 * 2 1 3 22 22 C 1.53773 * 113.61918 * 59.99477 * 21 2 1 23 23 C 1.53773 * 87.08573 * 219.93742 * 22 21 2 24 24 C 1.53000 * 113.61946 * 139.98199 * 23 22 21 25 25 C 1.53009 * 113.61593 * 270.80019 * 23 22 21 26 26 C 1.53777 * 87.17252 * 25.38857 * 23 22 21 27 27 H 1.08997 * 109.47030 * 270.00206 * 1 2 3 28 28 H 1.09006 * 109.47261 * 29.99809 * 1 2 3 29 29 H 1.08993 * 109.47340 * 149.99704 * 1 2 3 30 30 H 0.96993 * 120.00337 * 355.52585 * 5 3 2 31 31 H 1.08007 * 119.99652 * 0.02562 * 7 6 5 32 32 H 1.08003 * 119.99923 * 180.18260 * 8 7 6 33 33 H 0.96997 * 120.00123 * 180.02562 * 14 13 11 34 34 H 1.08006 * 120.00474 * 179.97438 * 19 9 8 35 35 H 1.07999 * 120.00312 * 179.97438 * 20 19 9 36 36 H 1.09005 * 112.84666 * 191.19600 * 21 2 1 37 37 H 1.09004 * 113.61463 * 105.38608 * 22 21 2 38 38 H 1.09005 * 113.61559 * 334.48772 * 22 21 2 39 39 H 1.08998 * 109.47524 * 181.52993 * 24 23 22 40 40 H 1.09003 * 109.46862 * 301.52976 * 24 23 22 41 41 H 1.09000 * 109.46757 * 61.52436 * 24 23 22 42 42 H 1.08993 * 109.47012 * 298.47324 * 25 23 22 43 43 H 1.09002 * 109.46648 * 58.47018 * 25 23 22 44 44 H 1.08993 * 109.47021 * 178.46401 * 25 23 22 45 45 H 1.09003 * 113.61261 * 89.16074 * 26 23 22 46 46 H 1.09000 * 113.61916 * 220.06033 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3548 1.1672 0.0005 5 7 1.4650 2.3344 -0.0005 6 6 2.1620 3.5452 0.0941 7 6 1.6073 4.6136 0.7875 8 6 2.2959 5.8056 0.8841 9 6 3.5395 5.9402 0.2802 10 8 4.2150 7.1147 0.3712 11 6 5.3628 7.2164 -0.3283 12 1 5.7485 6.3595 -0.8607 13 6 6.0481 8.4209 -0.3645 14 7 5.5784 9.4648 0.2843 15 14 7.6382 8.5620 -1.3345 16 1 7.3334 8.9785 -2.7269 17 1 8.5190 9.5735 -0.6968 18 1 8.3267 7.2463 -1.3508 19 6 4.0921 4.8736 -0.4172 20 6 3.4057 3.6799 -0.5097 21 6 2.1975 -1.2687 -0.0006 22 6 1.8953 -2.1540 -1.2210 23 6 1.9150 -3.3527 -0.2580 24 6 0.8285 -4.3901 -0.5481 25 6 3.3012 -3.9768 -0.0845 26 6 1.5405 -2.3642 0.8588 27 1 -0.3633 0.0000 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5138 30 1 0.4973 2.3357 -0.0664 31 1 0.6386 4.5101 1.2538 32 1 1.8660 6.6352 1.4256 33 1 6.0577 10.3077 0.2587 34 1 5.0589 4.9784 -0.8871 35 1 3.8352 2.8507 -1.0523 36 1 3.2625 -1.1427 0.1945 37 1 2.6991 -2.1720 -1.9571 38 1 0.9176 -1.9667 -1.6651 39 1 0.8867 -5.1926 0.1872 40 1 -0.1512 -3.9157 -0.4914 41 1 0.9760 -4.8009 -1.5469 42 1 3.6528 -4.3536 -1.0449 43 1 3.9954 -3.2226 0.2861 44 1 3.2429 -4.7987 0.6290 45 1 0.4655 -2.2344 0.9847 46 1 2.0581 -2.5516 1.7996 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324700293.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:06 Heat of formation + Delta-G solvation = -20.943969 kcal Electronic energy + Delta-G solvation = -26145.198958 eV Core-core repulsion = 22421.945129 eV Total energy + Delta-G solvation = -3723.253830 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.96231 -40.87306 -40.08624 -38.18727 -36.13169 -35.21021 -34.12039 -31.84856 -31.04956 -29.32428 -28.35059 -27.80457 -27.23255 -26.68121 -24.33385 -23.68978 -22.40377 -20.76603 -20.03199 -19.50660 -19.07636 -18.64607 -18.08727 -17.04440 -16.76499 -16.26292 -16.14277 -15.76587 -15.52558 -15.31586 -15.18867 -15.01970 -14.64889 -14.30397 -14.13224 -13.99420 -13.74600 -13.67704 -13.56443 -13.38477 -13.22394 -12.96724 -12.77126 -12.68679 -12.45212 -12.42430 -12.24804 -12.13373 -11.73266 -11.43917 -11.28272 -11.11353 -11.07209 -10.90653 -10.53517 -9.82850 -9.61740 -8.56620 -8.46384 -6.12932 0.53246 0.59818 1.34647 1.42937 1.51663 1.56813 2.05843 2.18286 2.83368 2.91230 3.16236 3.51754 3.52501 3.55804 3.82892 3.90016 4.08922 4.13480 4.20397 4.34758 4.48383 4.51085 4.58032 4.61569 4.69431 4.74012 4.74733 4.81254 4.88111 4.94216 4.96542 5.00562 5.06997 5.13453 5.15802 5.18353 5.25040 5.35454 5.36242 5.48161 5.52738 5.62158 5.65640 5.71395 5.97157 6.03184 6.19645 6.90421 6.98255 7.50547 7.77919 8.76295 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024941 B = 0.002365 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.366063 B =11837.351065 C =12705.060908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.613 5.613 3 C 0.693 3.307 4 O -0.624 6.624 5 N -0.662 5.662 6 C 0.080 3.920 7 C -0.078 4.078 8 C -0.177 4.177 9 C 0.105 3.895 10 O -0.227 6.227 11 C -0.413 4.413 12 H 0.096 0.904 13 C -0.021 4.021 14 N -0.918 5.918 15 Si 1.016 2.984 16 H -0.262 1.262 17 H -0.268 1.268 18 H -0.259 1.259 19 C -0.228 4.228 20 C -0.077 4.077 21 C 0.125 3.875 22 C -0.139 4.139 23 C -0.079 4.079 24 C -0.129 4.129 25 C -0.134 4.134 26 C -0.130 4.130 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.420 0.580 31 H 0.167 0.833 32 H 0.131 0.869 33 H 0.273 0.727 34 H 0.115 0.885 35 H 0.122 0.878 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.044 0.956 44 H 0.069 0.931 45 H 0.106 0.894 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.152 -27.631 -1.841 31.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.348 5.348 3 C 0.395 3.605 4 O -0.504 6.504 5 N -0.313 5.313 6 C -0.015 4.015 7 C -0.098 4.098 8 C -0.197 4.197 9 C 0.054 3.946 10 O -0.134 6.134 11 C -0.489 4.489 12 H 0.113 0.887 13 C -0.219 4.219 14 N -0.556 5.556 15 Si 0.835 3.165 16 H -0.186 1.186 17 H -0.193 1.193 18 H -0.183 1.183 19 C -0.248 4.248 20 C -0.097 4.097 21 C 0.021 3.979 22 C -0.177 4.177 23 C -0.080 4.080 24 C -0.186 4.186 25 C -0.191 4.191 26 C -0.168 4.168 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.116 0.884 30 H 0.260 0.740 31 H 0.184 0.816 32 H 0.149 0.851 33 H 0.082 0.918 34 H 0.133 0.867 35 H 0.140 0.860 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.118 0.882 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.088 0.912 45 H 0.124 0.876 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.338 -27.277 -1.660 30.860 hybrid contribution 0.791 0.578 -0.399 1.058 sum -13.547 -26.699 -2.059 30.010 Atomic orbital electron populations 1.22045 0.77262 1.04753 1.03446 1.47087 1.07787 1.03322 1.76649 1.16198 0.85042 0.81386 0.77842 1.90895 1.13886 1.86520 1.59103 1.42272 1.10378 1.02010 1.76650 1.17191 0.94630 0.86498 1.03146 1.20733 1.01032 0.90585 0.97473 1.20308 0.93261 0.99883 1.06268 1.19922 0.92778 0.86490 0.95364 1.83934 1.35231 1.31083 1.63119 1.21747 0.98495 0.98913 1.29763 0.88708 1.26520 1.03337 0.93496 0.98518 1.70177 1.41145 1.02171 1.42082 0.84625 0.75071 0.79038 0.77716 1.18640 1.19267 1.18262 1.21084 1.02375 0.94066 1.07264 1.20920 0.95028 0.95662 0.98091 1.22596 0.96574 0.80151 0.98546 1.23576 1.02751 0.94945 0.96476 1.21578 0.96728 0.93870 0.95807 1.21675 0.97146 0.97975 1.01840 1.21655 0.94579 1.00585 1.02282 1.23589 1.02185 0.93520 0.97521 0.90869 0.90203 0.88353 0.73986 0.81555 0.85144 0.91794 0.86720 0.86004 0.89570 0.92232 0.88244 0.91976 0.91492 0.92273 0.91959 0.93671 0.91248 0.87559 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 8.86 127.77 1.13 1.76 16 2 N -0.61 -12.16 3.08 -837.33 -2.58 -14.74 16 3 C 0.69 20.47 8.12 179.05 1.45 21.93 16 4 O -0.62 -24.88 13.26 -3.99 -0.05 -24.93 16 5 N -0.66 -17.40 5.22 -317.04 -1.65 -19.05 16 6 C 0.08 2.80 6.30 38.15 0.24 3.04 16 7 C -0.08 -2.57 9.96 22.38 0.22 -2.35 16 8 C -0.18 -7.47 9.98 22.37 0.22 -7.25 16 9 C 0.11 5.43 6.65 22.59 0.15 5.58 16 10 O -0.23 -13.99 9.76 -22.96 -0.22 -14.21 16 11 C -0.41 -24.98 9.48 67.91 0.64 -24.34 16 12 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 13 C -0.02 -1.23 5.49 84.82 0.47 -0.77 16 14 N -0.92 -57.10 13.67 21.61 0.30 -56.81 16 15 Si 1.02 44.54 29.55 68.60 2.03 46.57 16 16 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 17 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 18 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 19 C -0.23 -11.10 9.16 22.37 0.20 -10.90 16 20 C -0.08 -3.26 8.69 22.38 0.19 -3.07 16 21 C 0.13 2.38 3.85 45.57 0.18 2.56 16 22 C -0.14 -1.99 6.77 31.12 0.21 -1.78 16 23 C -0.08 -0.90 1.39 -51.66 -0.07 -0.97 16 24 C -0.13 -0.98 9.18 71.98 0.66 -0.32 16 25 C -0.13 -1.67 9.07 71.99 0.65 -1.02 16 26 C -0.13 -1.63 6.65 31.18 0.21 -1.42 16 27 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.08 0.57 6.30 -2.38 -0.02 0.56 16 29 H 0.10 0.52 6.35 -2.39 -0.02 0.50 16 30 H 0.42 7.18 6.52 -92.71 -0.60 6.57 16 31 H 0.17 3.77 8.06 -2.91 -0.02 3.74 16 32 H 0.13 5.19 8.06 -2.91 -0.02 5.16 16 33 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 34 H 0.11 5.78 5.63 -2.91 -0.02 5.76 16 35 H 0.12 5.30 6.22 -2.91 -0.02 5.28 16 36 H 0.09 2.25 6.73 -2.38 -0.02 2.23 16 37 H 0.06 1.01 8.10 -2.38 -0.02 0.99 16 38 H 0.10 1.11 6.88 -2.38 -0.02 1.10 16 39 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.07 0.38 7.98 -2.39 -0.02 0.36 16 41 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.04 0.70 7.34 -2.39 -0.02 0.68 16 44 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.11 0.92 6.59 -2.39 -0.02 0.90 16 46 H 0.07 0.95 8.10 -2.39 -0.02 0.93 16 Total: -1.00 -80.46 368.52 4.97 -75.49 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.40 Total: 26.98 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: 6.77 Total: -19.30 kcal Atomic # 7 Polarization: -86.66 SS G_CDS: -3.94 Total: -90.60 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -0.28 Total: -39.14 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -80.46 4.97 -75.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324700293.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.546 kcal (2) G-P(sol) polarization free energy of solvation -80.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds