Wall clock time and date at job start Tue Mar 31 2020 12:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52997 * 109.47229 * 89.99423 * 6 5 4 8 8 N 1.46505 * 109.47448 * 180.02562 * 7 6 5 9 9 C 1.34770 * 120.00241 * 180.02562 * 8 7 6 10 10 O 1.21351 * 120.00003 * 359.97438 * 9 8 7 11 11 C 1.49452 * 120.00087 * 180.02562 * 9 8 7 12 12 O 1.21351 * 119.99910 * 359.97438 * 11 9 8 13 13 N 1.34772 * 120.00274 * 179.97438 * 11 9 8 14 14 C 1.46500 * 120.00035 * 179.97438 * 13 11 9 15 15 C 1.53007 * 109.46930 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.46991 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47147 * 179.97438 * 16 15 14 18 18 H 1.07993 * 120.00003 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99961 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99981 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99904 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46961 * 90.00141 * 21 19 17 23 23 H 1.48502 * 109.46841 * 210.00305 * 21 19 17 24 24 H 1.48500 * 109.46722 * 330.00284 * 21 19 17 25 25 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 26 26 C 1.38234 * 120.00033 * 0.49775 * 25 5 4 27 27 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 28 28 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 29 29 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 30 30 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 33 33 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 34 34 H 1.09004 * 109.47454 * 300.00132 * 7 6 5 35 35 H 1.09006 * 109.47180 * 60.00059 * 7 6 5 36 36 H 0.97001 * 119.99648 * 359.97438 * 8 7 6 37 37 H 0.96999 * 120.00099 * 0.02562 * 13 11 9 38 38 H 1.09000 * 109.47356 * 300.00200 * 14 13 11 39 39 H 1.09001 * 109.46997 * 60.00812 * 14 13 11 40 40 H 1.09000 * 109.47075 * 300.00140 * 15 14 13 41 41 H 1.08993 * 109.47067 * 60.00455 * 15 14 13 42 42 H 1.08999 * 109.47430 * 300.00590 * 16 15 14 43 43 H 1.09006 * 109.47070 * 59.99962 * 16 15 14 44 44 H 0.97001 * 119.99867 * 179.97438 * 20 19 17 45 45 H 1.07999 * 119.99934 * 180.25938 * 25 5 4 46 46 H 1.08001 * 120.00294 * 179.76453 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2941 -0.0027 1.4304 8 7 7.7592 -0.0022 1.4249 9 6 8.4374 -0.0047 2.5895 10 8 7.8347 -0.0071 3.6427 11 6 9.9319 -0.0036 2.5838 12 8 10.5347 -0.0007 1.5306 13 7 10.6103 -0.0056 3.7484 14 6 12.0753 -0.0051 3.7428 15 6 12.5907 -0.0084 5.1834 16 6 14.1207 -0.0071 5.1776 17 6 14.6284 -0.0098 6.5965 18 1 13.9298 -0.0126 7.4200 19 6 15.9850 -0.0098 6.8433 20 7 16.8358 -0.0069 5.8404 21 14 16.6143 -0.0138 8.6021 22 1 16.7818 -1.4149 9.0647 23 1 17.9224 0.6868 8.6613 24 1 15.6391 0.6836 9.4783 25 6 3.5805 -1.1972 0.0010 26 6 2.1982 -1.1972 0.0009 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6582 2.1324 -0.0004 31 1 4.1205 2.1325 0.0001 32 1 6.1400 -0.8891 -0.5270 33 1 6.1401 0.8909 -0.5236 34 1 5.9328 0.8863 1.9473 35 1 5.9327 -0.8937 1.9440 36 1 8.2410 -0.0006 0.5830 37 1 10.1285 -0.0083 4.5903 38 1 12.4370 -0.8938 3.2258 39 1 12.4363 0.8862 3.2295 40 1 12.2290 0.8802 5.7008 41 1 12.2298 -0.8998 5.6964 42 1 14.4828 -0.8954 4.6600 43 1 14.4814 0.8845 4.6647 44 1 17.7901 -0.0065 6.0140 45 1 4.1205 -2.1325 0.0013 46 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326452181.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:30 Heat of formation + Delta-G solvation = -76.996167 kcal Electronic energy + Delta-G solvation = -24219.771595 eV Core-core repulsion = 20494.087160 eV Total energy + Delta-G solvation = -3725.684435 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.64640 -39.90104 -38.54070 -36.24731 -35.52916 -33.87540 -33.28394 -31.34081 -31.24785 -30.60208 -27.51142 -26.70335 -24.68927 -23.25536 -23.15171 -22.21650 -21.15567 -20.77592 -20.08779 -18.37709 -17.05080 -16.46132 -16.40902 -16.24493 -15.87541 -15.69543 -15.30122 -15.05346 -15.03121 -14.44804 -14.21584 -14.21420 -13.82224 -13.77275 -13.37025 -13.18892 -12.92422 -12.71416 -12.31274 -11.97799 -11.89613 -11.87971 -11.78738 -11.73091 -11.49514 -11.31468 -10.91447 -10.76329 -10.60621 -9.90512 -9.80121 -9.51351 -9.38676 -9.32623 -9.13701 -8.98575 -8.92342 -8.38064 -6.02904 -4.05905 0.86697 0.99523 1.41449 2.33220 3.22242 3.29886 3.31107 3.37488 3.40649 3.64519 4.32290 4.33535 4.43613 4.48847 4.52515 4.59315 4.59901 4.63016 4.92736 5.04552 5.08325 5.13950 5.24742 5.33172 5.36173 5.42750 5.53842 5.58980 5.67191 5.68823 5.70078 5.93611 6.00868 6.07676 6.18256 6.18692 6.26516 6.53778 6.58939 6.68588 6.90038 6.94924 7.39524 7.61476 7.71309 7.73074 7.95439 8.04419 8.36768 9.00610 9.58531 11.08366 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.042335 B = 0.001473 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.236249 B =19004.218765 C =19334.460583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.089 4.089 3 C -0.120 4.120 4 C -0.108 4.108 5 C -0.087 4.087 6 C -0.093 4.093 7 C 0.123 3.877 8 N -0.705 5.705 9 C 0.508 3.492 10 O -0.520 6.520 11 C 0.500 3.500 12 O -0.527 6.527 13 N -0.691 5.691 14 C 0.113 3.887 15 C -0.123 4.123 16 C 0.024 3.976 17 C -0.523 4.523 18 H 0.056 0.944 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.108 4.108 26 C -0.120 4.120 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.413 0.587 37 H 0.411 0.589 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.261 0.739 45 H 0.123 0.877 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.840 0.019 -15.222 35.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.089 4.089 3 C -0.138 4.138 4 C -0.126 4.126 5 C -0.088 4.088 6 C -0.130 4.130 7 C 0.000 4.000 8 N -0.360 5.360 9 C 0.289 3.711 10 O -0.395 6.395 11 C 0.280 3.720 12 O -0.404 6.404 13 N -0.343 5.343 14 C -0.009 4.009 15 C -0.161 4.161 16 C -0.013 4.013 17 C -0.561 4.561 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.126 4.126 26 C -0.138 4.138 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.250 0.750 37 H 0.247 0.753 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.071 0.929 45 H 0.141 0.859 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -31.636 0.025 -15.237 35.114 hybrid contribution 0.453 -0.015 0.930 1.034 sum -31.183 0.010 -14.307 34.309 Atomic orbital electron populations 1.20808 0.91208 1.02886 1.02347 1.19968 0.96157 0.93264 0.99466 1.21044 0.94162 0.97617 1.00943 1.21075 0.94223 0.97625 0.99722 1.19607 0.94569 0.93430 1.01203 1.20784 0.91814 1.04206 0.96222 1.21444 0.78482 1.03316 0.96755 1.45757 1.07370 1.73691 1.09135 1.20346 0.88832 0.77578 0.84350 1.90769 1.70254 1.47657 1.30797 1.19999 0.87818 0.79053 0.85146 1.90758 1.69941 1.48930 1.30769 1.46074 1.08951 1.70950 1.08297 1.21852 0.75969 1.02546 1.00487 1.21931 1.00903 1.01329 0.91938 1.19033 0.87113 0.97721 0.97471 1.21204 0.91651 1.50981 0.92309 0.92566 1.25021 0.97065 0.95211 0.97090 1.69964 1.02192 1.50566 1.30580 0.86576 0.78265 0.78116 0.84940 1.20647 1.21199 1.19862 1.21075 0.94222 0.97626 0.99722 1.21045 0.94162 0.97616 1.00942 0.91156 0.91492 0.91493 0.86015 0.85860 0.89884 0.89884 0.90738 0.90734 0.75023 0.75294 0.91075 0.91066 0.92415 0.92417 0.96193 0.96183 0.92923 0.85861 0.86014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.51 10.01 36.01 0.36 -0.15 16 2 C -0.09 -0.58 5.88 -104.62 -0.62 -1.19 16 3 C -0.12 -0.79 9.70 -39.58 -0.38 -1.17 16 4 C -0.11 -0.73 9.70 -39.58 -0.38 -1.12 16 5 C -0.09 -0.60 5.13 -104.63 -0.54 -1.13 16 6 C -0.09 -0.54 5.46 -27.89 -0.15 -0.69 16 7 C 0.12 0.99 5.66 -4.04 -0.02 0.96 16 8 N -0.71 -6.85 5.55 -60.72 -0.34 -7.19 16 9 C 0.51 6.63 7.89 -11.59 -0.09 6.54 16 10 O -0.52 -7.85 16.48 5.50 0.09 -7.76 16 11 C 0.50 7.42 7.89 -11.59 -0.09 7.33 16 12 O -0.53 -8.83 16.48 5.50 0.09 -8.74 16 13 N -0.69 -10.37 5.55 -60.73 -0.34 -10.71 16 14 C 0.11 1.94 5.67 -4.04 -0.02 1.92 16 15 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 16 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 17 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 21 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 C -0.11 -0.73 9.70 -39.58 -0.38 -1.12 16 26 C -0.12 -0.79 9.70 -39.58 -0.38 -1.17 16 27 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 29 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 30 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 31 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 32 H 0.08 0.42 8.09 -51.93 -0.42 0.00 16 33 H 0.08 0.42 8.09 -51.93 -0.42 0.00 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.41 3.47 7.94 -40.82 -0.32 3.14 16 37 H 0.41 5.65 7.94 -40.82 -0.32 5.33 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 46 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 LS Contribution 395.20 15.07 5.96 5.96 Total: -1.00 -32.83 395.20 -9.59 -42.42 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -7.37 Total: 1.87 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -3.40 Total: -6.40 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.06 Total: -43.80 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.18 Total: -16.50 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.83 -9.59 -42.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326452181.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.576 kcal (2) G-P(sol) polarization free energy of solvation -32.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds