Wall clock time and date at job start Tue Mar 31 2020 12:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52997 * 109.47229 * 89.99423 * 6 5 4 8 8 N 1.46505 * 109.47448 * 180.02562 * 7 6 5 9 9 C 1.34770 * 120.00241 * 180.02562 * 8 7 6 10 10 O 1.21351 * 120.00003 * 359.97438 * 9 8 7 11 11 C 1.49452 * 120.00087 * 180.02562 * 9 8 7 12 12 O 1.21351 * 119.99910 * 359.97438 * 11 9 8 13 13 N 1.34772 * 120.00274 * 179.97438 * 11 9 8 14 14 C 1.46500 * 120.00035 * 179.97438 * 13 11 9 15 15 C 1.53007 * 109.46930 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.46991 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47147 * 179.97438 * 16 15 14 18 18 H 1.07993 * 120.00003 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99961 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99981 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99904 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46961 * 90.00141 * 21 19 17 23 23 H 1.48502 * 109.46841 * 210.00305 * 21 19 17 24 24 H 1.48500 * 109.46722 * 330.00284 * 21 19 17 25 25 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 26 26 C 1.38234 * 120.00033 * 0.49775 * 25 5 4 27 27 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 28 28 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 29 29 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 30 30 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 33 33 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 34 34 H 1.09004 * 109.47454 * 300.00132 * 7 6 5 35 35 H 1.09006 * 109.47180 * 60.00059 * 7 6 5 36 36 H 0.97001 * 119.99648 * 359.97438 * 8 7 6 37 37 H 0.96999 * 120.00099 * 0.02562 * 13 11 9 38 38 H 1.09000 * 109.47356 * 300.00200 * 14 13 11 39 39 H 1.09001 * 109.46997 * 60.00812 * 14 13 11 40 40 H 1.09000 * 109.47075 * 300.00140 * 15 14 13 41 41 H 1.08993 * 109.47067 * 60.00455 * 15 14 13 42 42 H 1.08999 * 109.47430 * 300.00590 * 16 15 14 43 43 H 1.09006 * 109.47070 * 59.99962 * 16 15 14 44 44 H 0.97001 * 119.99867 * 179.97438 * 20 19 17 45 45 H 1.07999 * 119.99934 * 180.25938 * 25 5 4 46 46 H 1.08001 * 120.00294 * 179.76453 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2941 -0.0027 1.4304 8 7 7.7592 -0.0022 1.4249 9 6 8.4374 -0.0047 2.5895 10 8 7.8347 -0.0071 3.6427 11 6 9.9319 -0.0036 2.5838 12 8 10.5347 -0.0007 1.5306 13 7 10.6103 -0.0056 3.7484 14 6 12.0753 -0.0051 3.7428 15 6 12.5907 -0.0084 5.1834 16 6 14.1207 -0.0071 5.1776 17 6 14.6284 -0.0098 6.5965 18 1 13.9298 -0.0126 7.4200 19 6 15.9850 -0.0098 6.8433 20 7 16.8358 -0.0069 5.8404 21 14 16.6143 -0.0138 8.6021 22 1 16.7818 -1.4149 9.0647 23 1 17.9224 0.6868 8.6613 24 1 15.6391 0.6836 9.4783 25 6 3.5805 -1.1972 0.0010 26 6 2.1982 -1.1972 0.0009 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6582 2.1324 -0.0004 31 1 4.1205 2.1325 0.0001 32 1 6.1400 -0.8891 -0.5270 33 1 6.1401 0.8909 -0.5236 34 1 5.9328 0.8863 1.9473 35 1 5.9327 -0.8937 1.9440 36 1 8.2410 -0.0006 0.5830 37 1 10.1285 -0.0083 4.5903 38 1 12.4370 -0.8938 3.2258 39 1 12.4363 0.8862 3.2295 40 1 12.2290 0.8802 5.7008 41 1 12.2298 -0.8998 5.6964 42 1 14.4828 -0.8954 4.6600 43 1 14.4814 0.8845 4.6647 44 1 17.7901 -0.0065 6.0140 45 1 4.1205 -2.1325 0.0013 46 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326452181.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:30 Heat of formation + Delta-G solvation = -97.600988 kcal Electronic energy + Delta-G solvation = -24220.665087 eV Core-core repulsion = 20494.087160 eV Total energy + Delta-G solvation = -3726.577927 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.74001 -40.40829 -39.66096 -37.30115 -36.72315 -35.25126 -34.41653 -33.03908 -31.79627 -31.17839 -29.02535 -27.58643 -25.93247 -24.44516 -23.61240 -23.28193 -22.36575 -21.73879 -21.17842 -19.52871 -18.51035 -18.01230 -17.33013 -17.01424 -16.67435 -16.58032 -16.41826 -16.17175 -16.12852 -15.84038 -15.29501 -15.00601 -14.57822 -14.47677 -14.26920 -14.23905 -13.77946 -13.66287 -13.51341 -13.44595 -13.10492 -12.89835 -12.75730 -12.54699 -12.45517 -12.40047 -12.38323 -11.97248 -11.75865 -11.69737 -11.55579 -11.23383 -10.73500 -10.54288 -10.38869 -10.27804 -9.80826 -9.39718 -8.19119 -6.29994 0.29347 0.38418 0.51851 1.28319 1.42624 1.43281 1.54439 2.09334 2.41973 2.60213 2.83972 3.14963 3.39188 3.87578 3.89081 3.98610 4.08473 4.12982 4.13033 4.18118 4.18585 4.48529 4.52854 4.53462 4.60921 4.80822 4.82983 4.86486 4.90544 4.91925 4.93844 5.03133 5.13960 5.15465 5.22506 5.23084 5.31440 5.51988 5.52899 5.70730 5.71213 5.73287 5.84861 5.87180 6.14293 6.23367 6.32153 6.69211 6.86922 6.89761 7.39479 8.92756 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.042335 B = 0.001473 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.236249 B =19004.218765 C =19334.460583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.099 4.099 3 C -0.133 4.133 4 C -0.119 4.119 5 C -0.098 4.098 6 C -0.082 4.082 7 C 0.125 3.875 8 N -0.687 5.687 9 C 0.514 3.486 10 O -0.542 6.542 11 C 0.502 3.498 12 O -0.547 6.547 13 N -0.687 5.687 14 C 0.127 3.873 15 C -0.107 4.107 16 C 0.025 3.975 17 C -0.543 4.543 18 H 0.064 0.936 19 C 0.000 4.000 20 N -0.933 5.933 21 Si 0.964 3.036 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.263 1.263 25 C -0.119 4.119 26 C -0.133 4.133 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.422 0.578 37 H 0.419 0.581 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.067 0.933 42 H -0.003 1.003 43 H -0.003 1.003 44 H 0.263 0.737 45 H 0.134 0.866 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.372 0.013 -14.857 36.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.099 4.099 3 C -0.151 4.151 4 C -0.137 4.137 5 C -0.099 4.099 6 C -0.120 4.120 7 C 0.003 3.997 8 N -0.341 5.341 9 C 0.294 3.706 10 O -0.420 6.420 11 C 0.283 3.717 12 O -0.425 6.425 13 N -0.339 5.339 14 C 0.004 3.996 15 C -0.144 4.144 16 C -0.013 4.013 17 C -0.581 4.581 18 H 0.082 0.918 19 C -0.198 4.198 20 N -0.573 5.573 21 Si 0.789 3.211 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.187 1.187 25 C -0.137 4.137 26 C -0.151 4.151 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.260 0.740 37 H 0.256 0.744 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.015 0.985 43 H 0.015 0.985 44 H 0.072 0.928 45 H 0.151 0.849 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -33.207 0.019 -14.894 36.394 hybrid contribution 0.872 -0.014 0.741 1.144 sum -32.335 0.005 -14.153 35.297 Atomic orbital electron populations 1.20840 0.89912 1.03452 1.02950 1.20282 0.97331 0.93286 0.99050 1.21304 0.94418 0.98334 1.01012 1.21307 0.94572 0.98161 0.99673 1.19729 0.94977 0.93547 1.01609 1.20717 0.91232 1.05336 0.94710 1.21541 0.77012 1.02870 0.98325 1.45745 1.08168 1.71661 1.08476 1.19950 0.87749 0.77979 0.84953 1.90768 1.70194 1.49324 1.31667 1.20315 0.88740 0.78158 0.84534 1.90750 1.70605 1.49767 1.31401 1.45891 1.07955 1.71027 1.09027 1.21485 0.77368 1.02048 0.98701 1.21646 0.96916 1.02211 0.93670 1.18935 0.90993 0.95460 0.95916 1.21685 0.92233 1.50570 0.93649 0.91807 1.25961 0.97445 0.94750 1.01609 1.70097 1.02548 1.51635 1.33022 0.85457 0.77690 0.78433 0.79520 1.19864 1.20922 1.18675 1.21308 0.94572 0.98161 0.99674 1.21306 0.94417 0.98333 1.01011 0.90464 0.90940 0.90940 0.84791 0.84855 0.88776 0.88779 0.91183 0.91174 0.74043 0.74361 0.91662 0.91658 0.91488 0.91466 0.98494 0.98485 0.92795 0.84858 0.84791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.01 71.24 0.71 -0.16 16 2 C -0.10 -1.21 5.88 -19.86 -0.12 -1.32 16 3 C -0.13 -1.63 9.70 22.27 0.22 -1.41 16 4 C -0.12 -1.48 9.70 22.27 0.22 -1.27 16 5 C -0.10 -1.21 5.13 -19.87 -0.10 -1.32 16 6 C -0.08 -0.81 5.46 29.84 0.16 -0.65 16 7 C 0.13 1.82 5.66 86.38 0.49 2.31 16 8 N -0.69 -12.26 5.55 -464.40 -2.58 -14.84 16 9 C 0.51 12.77 7.89 87.27 0.69 13.46 16 10 O -0.54 -15.77 16.48 -3.25 -0.05 -15.82 16 11 C 0.50 14.41 7.89 87.27 0.69 15.09 16 12 O -0.55 -17.88 16.48 -3.25 -0.05 -17.93 16 13 N -0.69 -19.94 5.55 -464.40 -2.58 -22.52 16 14 C 0.13 4.31 5.67 86.38 0.49 4.80 16 15 C -0.11 -4.09 5.27 30.60 0.16 -3.93 16 16 C 0.02 1.26 4.97 29.85 0.15 1.41 16 17 C -0.54 -30.28 9.11 25.60 0.23 -30.04 16 18 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 19 C 0.00 0.01 5.46 84.66 0.46 0.47 16 20 N -0.93 -56.40 13.29 21.45 0.28 -56.12 16 21 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 25 C -0.12 -1.48 9.70 22.27 0.22 -1.27 16 26 C -0.13 -1.63 9.70 22.27 0.22 -1.41 16 27 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.07 0.46 8.09 -2.39 -0.02 0.44 16 29 H 0.07 0.46 8.09 -2.39 -0.02 0.44 16 30 H 0.13 1.19 8.06 -2.91 -0.02 1.16 16 31 H 0.13 1.28 8.06 -2.91 -0.02 1.25 16 32 H 0.09 0.74 8.09 -2.39 -0.02 0.72 16 33 H 0.09 0.74 8.09 -2.39 -0.02 0.72 16 34 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.42 6.30 7.94 -92.71 -0.74 5.56 16 37 H 0.42 10.97 7.94 -92.71 -0.74 10.24 16 38 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 43 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 44 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 45 H 0.13 1.28 8.06 -2.91 -0.02 1.25 16 46 H 0.13 1.19 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -69.79 395.20 1.44 -68.34 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -0.49 Total: 18.28 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 4.88 Total: -5.24 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -4.87 Total: -93.47 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -0.11 Total: -33.75 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -69.79 1.44 -68.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326452181.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.257 kcal (2) G-P(sol) polarization free energy of solvation -69.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds