Wall clock time and date at job start Tue Mar 31 2020 12:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38258 * 119.99964 * 2 1 4 4 C 1.38211 * 119.99774 * 180.21331 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.52161 * 4 3 2 6 6 C 1.50702 * 120.00325 * 180.25725 * 5 4 3 7 7 C 1.53004 * 109.46774 * 89.99999 * 6 5 4 8 8 N 1.46498 * 109.46955 * 180.02562 * 7 6 5 9 9 C 1.34779 * 120.00251 * 180.02562 * 8 7 6 10 10 O 1.21354 * 119.99396 * 0.02562 * 9 8 7 11 11 C 1.49444 * 120.00198 * 180.02562 * 9 8 7 12 12 O 1.21346 * 120.00646 * 0.02562 * 11 9 8 13 13 N 1.34788 * 119.99989 * 180.02562 * 11 9 8 14 14 C 1.46490 * 120.00046 * 180.02562 * 13 11 9 15 15 C 1.52998 * 109.47389 * 180.02562 * 14 13 11 16 16 C 1.50693 * 109.47588 * 179.97438 * 15 14 13 17 17 H 1.08005 * 120.00276 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00493 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99451 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00316 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47097 * 59.99982 * 20 18 16 22 22 H 1.48501 * 109.46808 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.46977 * 299.99847 * 20 18 16 24 24 C 1.38215 * 120.00141 * 0.28711 * 5 4 3 25 25 C 1.38211 * 119.99823 * 179.77787 * 2 1 3 26 26 C 1.50706 * 120.00291 * 0.02562 * 25 2 1 27 27 H 1.09001 * 109.47235 * 270.21618 * 1 2 3 28 28 H 1.08998 * 109.46741 * 30.21621 * 1 2 3 29 29 H 1.09000 * 109.47220 * 150.21894 * 1 2 3 30 30 H 1.07998 * 119.99848 * 0.02562 * 3 2 1 31 31 H 1.08002 * 120.00200 * 179.80765 * 4 3 2 32 32 H 1.08993 * 109.47429 * 210.00606 * 6 5 4 33 33 H 1.08998 * 109.46961 * 330.00857 * 6 5 4 34 34 H 1.08999 * 109.47352 * 300.00741 * 7 6 5 35 35 H 1.09003 * 109.47116 * 60.00528 * 7 6 5 36 36 H 0.96998 * 120.00209 * 0.02562 * 8 7 6 37 37 H 0.97003 * 119.99305 * 0.02562 * 13 11 9 38 38 H 1.08999 * 109.47450 * 300.00224 * 14 13 11 39 39 H 1.09001 * 109.47525 * 59.99870 * 14 13 11 40 40 H 1.08999 * 109.46979 * 300.00478 * 15 14 13 41 41 H 1.09003 * 109.47059 * 60.00000 * 15 14 13 42 42 H 0.96995 * 119.99501 * 180.02562 * 19 18 16 43 43 H 1.07996 * 120.00459 * 179.97438 * 24 5 4 44 44 H 1.08998 * 109.46845 * 270.01936 * 26 25 2 45 45 H 1.08998 * 109.46732 * 30.01361 * 26 25 2 46 46 H 1.08993 * 109.47519 * 150.01854 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0045 5 6 4.2717 0.0000 0.0011 6 6 5.7787 -0.0001 0.0021 7 6 6.2877 0.0060 1.4450 8 7 7.7527 0.0065 1.4460 9 6 8.4258 0.0110 2.6136 10 8 7.8183 0.0142 3.6641 11 6 9.9203 0.0122 2.6147 12 8 10.5278 0.0095 1.5643 13 7 10.5934 0.0161 3.7824 14 6 12.0583 0.0178 3.7834 15 6 12.5674 0.0217 5.2262 16 6 14.0743 0.0228 5.2273 17 1 14.6150 0.0213 4.2924 18 6 14.7629 0.0257 6.4218 19 7 14.1045 0.0280 7.5603 20 14 16.6309 0.0278 6.4231 21 1 17.1251 1.2396 5.7213 22 1 17.1249 0.0314 7.8236 23 1 17.1277 -1.1854 5.7257 24 6 3.5807 -1.1970 0.0051 25 6 2.1981 -1.1970 0.0046 26 6 1.4446 -2.5021 0.0091 27 1 -0.3634 0.0039 1.0277 28 1 -0.3633 0.8880 -0.5172 29 1 -0.3634 -0.8919 -0.5104 30 1 1.6583 2.1326 0.0004 31 1 4.1205 2.1326 -0.0076 32 1 6.1424 -0.8921 -0.5078 33 1 6.1424 0.8877 -0.5151 34 1 5.9240 0.8981 1.9548 35 1 5.9240 -0.8818 1.9623 36 1 8.2383 0.0036 0.6063 37 1 10.1077 0.0179 4.6221 38 1 12.4231 -0.8731 3.2723 39 1 12.4211 0.9068 3.2674 40 1 12.2026 0.9124 5.7378 41 1 12.2047 -0.8675 5.7419 42 1 14.5889 0.0304 8.4007 43 1 4.1206 -2.1323 0.0090 44 1 1.2622 -2.8128 1.0378 45 1 0.4925 -2.3737 -0.5058 46 1 2.0339 -3.2637 -0.5014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328561733.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:55 Heat of formation + Delta-G solvation = -75.413889 kcal Electronic energy + Delta-G solvation = -24555.650708 eV Core-core repulsion = 20830.034886 eV Total energy + Delta-G solvation = -3725.615823 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.46483 -40.02771 -38.31490 -36.20846 -35.10325 -34.00034 -32.84631 -32.60629 -30.54597 -29.79731 -27.78485 -26.74505 -25.44162 -23.92597 -22.59611 -22.36892 -21.04296 -20.57710 -19.95968 -18.24463 -16.88915 -16.48705 -16.37037 -16.05002 -15.84312 -15.46626 -14.99685 -14.82367 -14.80616 -14.62348 -14.43571 -13.85652 -13.49507 -13.45165 -13.20669 -13.10029 -13.04867 -12.81266 -12.72223 -12.31831 -12.30431 -11.76695 -11.72061 -11.52795 -11.28449 -11.23154 -11.18340 -11.04425 -10.68296 -10.38681 -9.79790 -9.45309 -9.36257 -9.21025 -9.08214 -8.77533 -8.69160 -8.41100 -6.09618 -4.13442 0.94500 1.04867 1.62162 2.53908 3.30945 3.34197 3.35181 3.37935 3.43830 3.87334 4.35608 4.38321 4.41504 4.53141 4.63949 4.65356 4.66180 4.79610 4.83920 4.98770 5.10020 5.16110 5.24096 5.27118 5.28813 5.34049 5.42969 5.45189 5.54203 5.65059 5.79064 5.85313 6.07291 6.12785 6.18424 6.24091 6.25544 6.30239 6.59902 6.67723 6.69670 7.05159 7.46986 7.58223 7.67243 7.87444 7.93308 8.21620 8.34429 8.91875 9.51374 11.01788 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.038574 B = 0.001605 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.701269 B =17443.728327 C =17586.178095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.090 4.090 3 C -0.115 4.115 4 C -0.114 4.114 5 C -0.082 4.082 6 C -0.092 4.092 7 C 0.124 3.876 8 N -0.707 5.707 9 C 0.507 3.493 10 O -0.519 6.519 11 C 0.497 3.503 12 O -0.534 6.534 13 N -0.686 5.686 14 C 0.118 3.882 15 C 0.011 3.989 16 C -0.524 4.524 17 H 0.060 0.940 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.899 3.101 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.109 4.109 25 C -0.086 4.086 26 C -0.118 4.118 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.413 0.587 37 H 0.411 0.589 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.263 0.737 43 H 0.123 0.877 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.932 -0.944 -17.483 32.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.090 4.090 3 C -0.133 4.133 4 C -0.132 4.132 5 C -0.083 4.083 6 C -0.130 4.130 7 C 0.000 4.000 8 N -0.362 5.362 9 C 0.288 3.712 10 O -0.394 6.394 11 C 0.277 3.723 12 O -0.412 6.412 13 N -0.337 5.337 14 C -0.003 4.003 15 C -0.027 4.027 16 C -0.563 4.563 17 H 0.078 0.922 18 C -0.142 4.142 19 N -0.530 5.530 20 Si 0.726 3.274 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.127 4.127 25 C -0.086 4.086 26 C -0.175 4.175 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.249 0.751 37 H 0.246 0.754 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.073 0.927 43 H 0.141 0.859 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -27.890 -0.946 -17.245 32.804 hybrid contribution 1.036 0.075 0.151 1.049 sum -26.854 -0.871 -17.094 31.845 Atomic orbital electron populations 1.20865 0.91358 1.02793 1.02413 1.19784 0.96001 0.92713 1.00516 1.21005 0.94141 0.97467 1.00706 1.21044 0.94196 0.97588 1.00415 1.19586 0.94560 0.93335 1.00813 1.20781 0.91770 1.04134 0.96298 1.21415 0.78714 1.03245 0.96581 1.45753 1.07255 1.73999 1.09146 1.20459 0.89074 0.77407 0.84228 1.90765 1.70030 1.47542 1.31104 1.19971 0.87644 0.79386 0.85316 1.90725 1.69650 1.49730 1.31132 1.46238 1.09602 1.69834 1.07998 1.21935 0.74844 1.01336 1.02194 1.19356 0.96610 0.98265 0.88447 1.20975 0.90708 1.51891 0.92736 0.92217 1.25002 0.98843 0.94913 0.95485 1.69953 1.35779 1.49945 0.97364 0.86550 0.85086 0.78749 0.76999 1.20111 1.21229 1.20108 1.20940 0.93459 0.97658 1.00689 1.19753 0.93639 0.94946 1.00259 1.20869 1.00084 0.94017 1.02506 0.91112 0.91660 0.91178 0.86040 0.85918 0.89952 0.89915 0.90815 0.90829 0.75109 0.75371 0.91856 0.91853 0.95648 0.95647 0.92725 0.85925 0.91034 0.91182 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 9.60 36.01 0.35 -0.26 16 2 C -0.09 -0.67 5.88 -104.62 -0.62 -1.28 16 3 C -0.12 -0.86 9.70 -39.58 -0.38 -1.24 16 4 C -0.11 -0.88 9.70 -39.58 -0.38 -1.27 16 5 C -0.08 -0.65 5.13 -104.62 -0.54 -1.18 16 6 C -0.09 -0.64 5.46 -27.88 -0.15 -0.79 16 7 C 0.12 1.16 5.66 -4.04 -0.02 1.14 16 8 N -0.71 -8.00 5.55 -60.73 -0.34 -8.34 16 9 C 0.51 7.65 7.89 -11.59 -0.09 7.56 16 10 O -0.52 -8.94 16.48 5.49 0.09 -8.85 16 11 C 0.50 8.59 7.89 -11.58 -0.09 8.50 16 12 O -0.53 -10.07 16.48 5.50 0.09 -9.98 16 13 N -0.69 -12.60 5.55 -60.74 -0.34 -12.94 16 14 C 0.12 2.49 5.61 -4.05 -0.02 2.46 16 15 C 0.01 0.27 5.09 -27.89 -0.14 0.12 16 16 C -0.52 -14.44 9.11 -34.44 -0.31 -14.76 16 17 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 20 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 C -0.11 -0.86 9.36 -39.58 -0.37 -1.23 16 25 C -0.09 -0.65 5.88 -104.62 -0.62 -1.27 16 26 C -0.12 -0.65 9.60 36.01 0.35 -0.30 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.28 8.09 -51.93 -0.42 -0.14 16 29 H 0.07 0.30 5.95 -51.93 -0.31 -0.01 16 30 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 31 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 33 H 0.08 0.50 8.09 -51.93 -0.42 0.08 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.41 4.08 7.94 -40.82 -0.32 3.76 16 37 H 0.41 7.22 7.95 -40.82 -0.32 6.89 16 38 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 0.31 5.95 -51.93 -0.31 0.00 16 46 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 LS Contribution 390.71 15.07 5.89 5.89 Total: -1.00 -32.20 390.71 -9.18 -41.37 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -7.14 Total: 4.21 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -3.15 Total: -2.23 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.06 Total: -46.66 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: 0.18 Total: -18.84 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.20 -9.18 -41.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328561733.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.043 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds