Wall clock time and date at job start Tue Mar 31 2020 12:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38258 * 119.99964 * 2 1 4 4 C 1.38211 * 119.99774 * 180.21331 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.52161 * 4 3 2 6 6 C 1.50702 * 120.00325 * 180.25725 * 5 4 3 7 7 C 1.53004 * 109.46774 * 89.99999 * 6 5 4 8 8 N 1.46498 * 109.46955 * 180.02562 * 7 6 5 9 9 C 1.34779 * 120.00251 * 180.02562 * 8 7 6 10 10 O 1.21354 * 119.99396 * 0.02562 * 9 8 7 11 11 C 1.49444 * 120.00198 * 180.02562 * 9 8 7 12 12 O 1.21346 * 120.00646 * 0.02562 * 11 9 8 13 13 N 1.34788 * 119.99989 * 180.02562 * 11 9 8 14 14 C 1.46490 * 120.00046 * 180.02562 * 13 11 9 15 15 C 1.52998 * 109.47389 * 180.02562 * 14 13 11 16 16 C 1.50693 * 109.47588 * 179.97438 * 15 14 13 17 17 H 1.08005 * 120.00276 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00493 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99451 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00316 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47097 * 59.99982 * 20 18 16 22 22 H 1.48501 * 109.46808 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.46977 * 299.99847 * 20 18 16 24 24 C 1.38215 * 120.00141 * 0.28711 * 5 4 3 25 25 C 1.38211 * 119.99823 * 179.77787 * 2 1 3 26 26 C 1.50706 * 120.00291 * 0.02562 * 25 2 1 27 27 H 1.09001 * 109.47235 * 270.21618 * 1 2 3 28 28 H 1.08998 * 109.46741 * 30.21621 * 1 2 3 29 29 H 1.09000 * 109.47220 * 150.21894 * 1 2 3 30 30 H 1.07998 * 119.99848 * 0.02562 * 3 2 1 31 31 H 1.08002 * 120.00200 * 179.80765 * 4 3 2 32 32 H 1.08993 * 109.47429 * 210.00606 * 6 5 4 33 33 H 1.08998 * 109.46961 * 330.00857 * 6 5 4 34 34 H 1.08999 * 109.47352 * 300.00741 * 7 6 5 35 35 H 1.09003 * 109.47116 * 60.00528 * 7 6 5 36 36 H 0.96998 * 120.00209 * 0.02562 * 8 7 6 37 37 H 0.97003 * 119.99305 * 0.02562 * 13 11 9 38 38 H 1.08999 * 109.47450 * 300.00224 * 14 13 11 39 39 H 1.09001 * 109.47525 * 59.99870 * 14 13 11 40 40 H 1.08999 * 109.46979 * 300.00478 * 15 14 13 41 41 H 1.09003 * 109.47059 * 60.00000 * 15 14 13 42 42 H 0.96995 * 119.99501 * 180.02562 * 19 18 16 43 43 H 1.07996 * 120.00459 * 179.97438 * 24 5 4 44 44 H 1.08998 * 109.46845 * 270.01936 * 26 25 2 45 45 H 1.08998 * 109.46732 * 30.01361 * 26 25 2 46 46 H 1.08993 * 109.47519 * 150.01854 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0045 5 6 4.2717 0.0000 0.0011 6 6 5.7787 -0.0001 0.0021 7 6 6.2877 0.0060 1.4450 8 7 7.7527 0.0065 1.4460 9 6 8.4258 0.0110 2.6136 10 8 7.8183 0.0142 3.6641 11 6 9.9203 0.0122 2.6147 12 8 10.5278 0.0095 1.5643 13 7 10.5934 0.0161 3.7824 14 6 12.0583 0.0178 3.7834 15 6 12.5674 0.0217 5.2262 16 6 14.0743 0.0228 5.2273 17 1 14.6150 0.0213 4.2924 18 6 14.7629 0.0257 6.4218 19 7 14.1045 0.0280 7.5603 20 14 16.6309 0.0278 6.4231 21 1 17.1251 1.2396 5.7213 22 1 17.1249 0.0314 7.8236 23 1 17.1277 -1.1854 5.7257 24 6 3.5807 -1.1970 0.0051 25 6 2.1981 -1.1970 0.0046 26 6 1.4446 -2.5021 0.0091 27 1 -0.3634 0.0039 1.0277 28 1 -0.3633 0.8880 -0.5172 29 1 -0.3634 -0.8919 -0.5104 30 1 1.6583 2.1326 0.0004 31 1 4.1205 2.1326 -0.0076 32 1 6.1424 -0.8921 -0.5078 33 1 6.1424 0.8877 -0.5151 34 1 5.9240 0.8981 1.9548 35 1 5.9240 -0.8818 1.9623 36 1 8.2383 0.0036 0.6063 37 1 10.1077 0.0179 4.6221 38 1 12.4231 -0.8731 3.2723 39 1 12.4211 0.9068 3.2674 40 1 12.2026 0.9124 5.7378 41 1 12.2047 -0.8675 5.7419 42 1 14.5889 0.0304 8.4007 43 1 4.1206 -2.1323 0.0090 44 1 1.2622 -2.8128 1.0378 45 1 0.4925 -2.3737 -0.5058 46 1 2.0339 -3.2637 -0.5014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328561733.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:54 Heat of formation + Delta-G solvation = -95.559744 kcal Electronic energy + Delta-G solvation = -24556.524298 eV Core-core repulsion = 20830.034886 eV Total energy + Delta-G solvation = -3726.489412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.71644 -40.62233 -39.64655 -37.20453 -36.60154 -34.98458 -34.62100 -33.12859 -31.70351 -31.19682 -28.35132 -27.68720 -26.84567 -25.15226 -23.58083 -22.96086 -22.76718 -21.60672 -20.82343 -19.53806 -18.57895 -17.88941 -17.31276 -16.87159 -16.79850 -16.57062 -16.42725 -16.08814 -16.00450 -15.56628 -15.16208 -15.05332 -14.86670 -14.35605 -14.29856 -13.98066 -13.65900 -13.58055 -13.51790 -13.34855 -13.26313 -12.92498 -12.85851 -12.69748 -12.54303 -12.38765 -12.28569 -12.26939 -11.80830 -11.69292 -11.67538 -11.45516 -10.72572 -10.60653 -10.37930 -10.20032 -9.63478 -9.31814 -8.22921 -6.34388 0.30686 0.38621 0.49817 1.31504 1.44152 1.46097 1.54290 2.10817 2.40259 2.65539 2.81314 3.11972 3.41782 3.83523 3.87233 3.97484 4.05074 4.11352 4.16098 4.35559 4.38557 4.45157 4.48378 4.53252 4.71457 4.73603 4.80809 4.81134 4.88634 4.90603 4.93063 5.05586 5.07297 5.07508 5.14306 5.28827 5.40961 5.42139 5.54765 5.56459 5.70073 5.75328 5.78303 5.91510 6.12978 6.16196 6.35438 6.69900 6.79656 6.91728 7.35179 8.88822 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.038574 B = 0.001605 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.701269 B =17443.728327 C =17586.178095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.102 4.102 3 C -0.127 4.127 4 C -0.126 4.126 5 C -0.093 4.093 6 C -0.081 4.081 7 C 0.125 3.875 8 N -0.686 5.686 9 C 0.513 3.487 10 O -0.544 6.544 11 C 0.501 3.499 12 O -0.548 6.548 13 N -0.689 5.689 14 C 0.138 3.862 15 C 0.018 3.982 16 C -0.546 4.546 17 H 0.065 0.935 18 C 0.005 3.995 19 N -0.928 5.928 20 Si 0.968 3.032 21 H -0.267 1.267 22 H -0.283 1.283 23 H -0.267 1.267 24 C -0.123 4.123 25 C -0.100 4.100 26 C -0.117 4.117 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.422 0.578 37 H 0.414 0.586 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.007 0.993 41 H 0.007 0.993 42 H 0.265 0.735 43 H 0.130 0.870 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.301 -1.004 -18.957 34.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.102 4.102 3 C -0.145 4.145 4 C -0.144 4.144 5 C -0.094 4.094 6 C -0.119 4.119 7 C 0.003 3.997 8 N -0.339 5.339 9 C 0.293 3.707 10 O -0.421 6.421 11 C 0.282 3.718 12 O -0.427 6.427 13 N -0.340 5.340 14 C 0.015 3.985 15 C -0.020 4.020 16 C -0.585 4.585 17 H 0.084 0.916 18 C -0.194 4.194 19 N -0.567 5.567 20 Si 0.793 3.207 21 H -0.192 1.192 22 H -0.209 1.209 23 H -0.192 1.192 24 C -0.141 4.141 25 C -0.100 4.100 26 C -0.174 4.174 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.260 0.740 37 H 0.250 0.750 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.074 0.926 43 H 0.148 0.852 44 H 0.091 0.909 45 H 0.099 0.901 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -28.287 -1.007 -18.772 33.964 hybrid contribution 1.048 0.098 0.563 1.194 sum -27.238 -0.909 -18.209 32.777 Atomic orbital electron populations 1.20900 0.89923 1.03645 1.02855 1.20121 0.97275 0.92705 1.00092 1.21276 0.94353 0.98235 1.00649 1.21271 0.94600 0.98062 1.00479 1.19695 0.94898 0.93484 1.01291 1.20709 0.91278 1.05341 0.94548 1.21532 0.77039 1.02771 0.98384 1.45717 1.08154 1.71734 1.08322 1.19983 0.87796 0.77923 0.84958 1.90766 1.69938 1.49316 1.32105 1.20311 0.88754 0.78308 0.84474 1.90715 1.70324 1.50158 1.31461 1.46083 1.08591 1.70499 1.08847 1.21483 0.76456 1.01208 0.99351 1.19184 0.95812 0.96459 0.90541 1.21427 0.92167 1.51725 0.93160 0.91646 1.25924 1.03995 0.94376 0.95062 1.70077 1.37778 1.50862 0.98005 0.85449 0.78903 0.79212 0.77178 1.19189 1.20876 1.19173 1.21165 0.93918 0.98091 1.00891 1.20070 0.93881 0.95934 1.00115 1.20899 1.00451 0.93187 1.02835 0.90777 0.90886 0.90299 0.84739 0.84946 0.88791 0.88695 0.91275 0.91332 0.73991 0.74957 0.91946 0.91941 0.97422 0.97421 0.92595 0.85172 0.90852 0.90132 0.91071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 9.60 71.24 0.68 -0.35 16 2 C -0.10 -1.41 5.88 -19.86 -0.12 -1.53 16 3 C -0.13 -1.78 9.70 22.27 0.22 -1.56 16 4 C -0.13 -1.82 9.70 22.27 0.22 -1.61 16 5 C -0.09 -1.36 5.13 -19.86 -0.10 -1.46 16 6 C -0.08 -0.98 5.46 29.85 0.16 -0.82 16 7 C 0.13 2.19 5.66 86.38 0.49 2.67 16 8 N -0.69 -14.46 5.55 -464.40 -2.58 -17.03 16 9 C 0.51 15.01 7.89 87.27 0.69 15.70 16 10 O -0.54 -18.49 16.48 -3.26 -0.05 -18.54 16 11 C 0.50 16.95 7.89 87.27 0.69 17.64 16 12 O -0.55 -20.03 16.48 -3.23 -0.05 -20.09 16 13 N -0.69 -25.29 5.55 -464.43 -2.58 -27.87 16 14 C 0.14 5.78 5.61 86.38 0.48 6.27 16 15 C 0.02 0.89 5.09 29.85 0.15 1.04 16 16 C -0.55 -30.20 9.11 25.60 0.23 -29.97 16 17 H 0.07 3.46 7.74 -2.91 -0.02 3.43 16 18 C 0.01 0.29 5.46 84.65 0.46 0.75 16 19 N -0.93 -54.92 13.29 21.45 0.28 -54.63 16 20 Si 0.97 43.34 29.54 68.60 2.03 45.36 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 24 C -0.12 -1.81 9.36 22.27 0.21 -1.61 16 25 C -0.10 -1.42 5.88 -19.86 -0.12 -1.54 16 26 C -0.12 -1.14 9.60 71.24 0.68 -0.46 16 27 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.52 8.09 -2.39 -0.02 0.50 16 29 H 0.08 0.54 5.95 -2.39 -0.01 0.53 16 30 H 0.13 1.40 8.06 -2.91 -0.02 1.38 16 31 H 0.13 1.54 8.06 -2.91 -0.02 1.51 16 32 H 0.09 0.94 8.08 -2.39 -0.02 0.92 16 33 H 0.09 0.94 8.09 -2.39 -0.02 0.92 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 36 H 0.42 7.48 7.94 -92.71 -0.74 6.75 16 37 H 0.41 14.73 7.95 -92.71 -0.74 14.00 16 38 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 43 H 0.13 1.60 8.06 -2.91 -0.02 1.58 16 44 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.08 0.59 5.95 -2.39 -0.01 0.57 16 46 H 0.07 0.61 8.08 -2.39 -0.02 0.59 16 Total: -1.00 -67.98 390.71 1.61 -66.38 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -0.48 Total: 23.25 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 5.03 Total: 3.17 kcal Atomic # 7 Polarization: -94.67 SS G_CDS: -4.87 Total: -99.54 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -0.11 Total: -38.63 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -67.98 1.61 -66.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328561733.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.183 kcal (2) G-P(sol) polarization free energy of solvation -67.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds