Wall clock time and date at job start Tue Mar 31 2020 12:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52992 * 115.54792 * 2 1 4 4 C 1.52996 * 117.49411 * 145.66833 * 2 1 3 5 5 N 1.46499 * 117.50398 * 359.97438 * 4 2 1 6 6 C 1.34777 * 120.00471 * 204.90962 * 5 4 2 7 7 O 1.21590 * 119.99537 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00492 * 180.02562 * 6 5 4 9 9 C 1.40024 * 120.00591 * 175.49710 * 8 6 5 10 10 C 1.38904 * 120.00286 * 214.85274 * 9 8 6 11 11 C 1.38010 * 119.99873 * 179.80854 * 10 9 8 12 12 C 1.38906 * 119.99969 * 0.44624 * 11 10 9 13 13 O 1.35787 * 119.99972 * 179.76571 * 12 11 10 14 14 C 1.34815 * 117.00061 * 185.36174 * 13 12 11 15 15 H 1.07999 * 119.99645 * 354.96538 * 14 13 12 16 16 C 1.38627 * 120.00081 * 174.96368 * 14 13 12 17 17 N 1.31572 * 120.00059 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99876 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47317 * 89.99981 * 18 16 14 20 20 H 1.48500 * 109.46833 * 210.00011 * 18 16 14 21 21 H 1.48499 * 109.47306 * 329.99522 * 18 16 14 22 22 C 1.38902 * 120.00441 * 359.78376 * 12 11 10 23 23 C 1.38010 * 119.99815 * 0.02562 * 22 12 11 24 24 C 1.52999 * 60.03286 * 107.47896 * 4 2 1 25 25 C 1.52993 * 117.50249 * 107.49690 * 24 4 2 26 26 C 1.53007 * 117.49726 * 252.52192 * 24 4 2 27 27 H 1.08995 * 109.46974 * 325.72179 * 1 2 3 28 28 H 1.08997 * 109.46743 * 85.72253 * 1 2 3 29 29 H 1.08995 * 109.46764 * 205.72319 * 1 2 3 30 30 H 1.08998 * 109.47040 * 154.28191 * 3 2 1 31 31 H 1.09000 * 109.47258 * 274.27183 * 3 2 1 32 32 H 1.08995 * 109.47632 * 34.27671 * 3 2 1 33 33 H 1.09002 * 117.49792 * 214.97755 * 4 2 1 34 34 H 0.97004 * 119.99713 * 24.92056 * 5 4 2 35 35 H 0.97003 * 119.99749 * 355.49843 * 8 6 5 36 36 H 1.07996 * 119.99992 * 0.02562 * 10 9 8 37 37 H 1.07998 * 120.00403 * 180.18361 * 11 10 9 38 38 H 0.97001 * 120.00506 * 179.97438 * 17 16 14 39 39 H 1.07993 * 120.00374 * 179.97438 * 22 12 11 40 40 H 1.08004 * 120.00099 * 179.97438 * 23 22 12 41 41 H 1.09001 * 109.47284 * 111.39114 * 25 24 4 42 42 H 1.09002 * 109.47668 * 231.39351 * 25 24 4 43 43 H 1.09000 * 109.47386 * 351.39561 * 25 24 4 44 44 H 1.08993 * 109.46918 * 8.60367 * 26 24 4 45 45 H 1.08999 * 109.47025 * 128.60668 * 26 24 4 46 46 H 1.08997 * 109.46963 * 248.60407 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2364 -1.1207 0.7654 5 7 1.3961 -2.1114 1.4427 6 6 1.8768 -2.7913 2.5024 7 8 3.0079 -2.5822 2.8967 8 7 1.1039 -3.7030 3.1252 9 6 1.6334 -4.4764 4.1654 10 6 1.2231 -5.7932 4.3302 11 6 1.7480 -6.5567 5.3531 12 6 2.6796 -6.0054 6.2236 13 8 3.1924 -6.7551 7.2329 14 6 4.0059 -6.1298 8.1074 15 1 4.2880 -5.1006 7.9415 16 6 4.4802 -6.8079 9.2196 17 7 4.1361 -8.0616 9.4220 18 14 5.6068 -5.9412 10.4317 19 1 4.7905 -5.2882 11.4864 20 1 6.5196 -6.9329 11.0551 21 1 6.4059 -4.9137 9.7171 22 6 3.0863 -4.6871 6.0618 23 6 2.5645 -3.9249 5.0365 24 6 2.2368 -1.1222 -0.7646 25 6 3.5494 -0.7782 -1.4711 26 6 1.3589 -2.1577 -1.4702 27 1 -0.3633 0.8491 0.5788 28 1 -0.3633 0.0766 -1.0248 29 1 -0.3633 -0.9258 0.4460 30 1 3.1819 1.3088 0.4459 31 1 2.2776 1.7412 -1.0248 32 1 1.5805 2.0744 0.5787 33 1 3.1715 -0.8748 1.2686 34 1 0.4937 -2.2780 1.1283 35 1 0.1808 -3.8235 2.8527 36 1 0.4961 -6.2207 3.6557 37 1 1.4313 -7.5814 5.4795 38 1 4.4683 -8.5362 10.2000 39 1 3.8103 -4.2584 6.7388 40 1 2.8804 -2.8997 4.9109 41 1 3.9369 -1.6662 -1.9705 42 1 3.3710 0.0045 -2.2085 43 1 4.2758 -0.4277 -0.7378 44 1 0.7295 -2.6610 -0.7364 45 1 0.7297 -1.6589 -2.2074 46 1 1.9921 -2.8910 -1.9697 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340073049.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:53 Heat of formation + Delta-G solvation = -4.166835 kcal Electronic energy + Delta-G solvation = -26058.839358 eV Core-core repulsion = 22336.313039 eV Total energy + Delta-G solvation = -3722.526319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.72464 -39.52761 -38.51725 -36.48020 -34.03968 -33.36821 -32.09708 -31.51181 -30.14582 -28.98364 -28.13825 -26.85615 -26.61994 -25.20109 -22.56872 -21.84847 -20.52279 -20.32137 -18.59877 -18.11964 -17.86021 -17.30719 -16.53371 -15.66629 -15.24233 -15.16121 -14.79387 -14.47711 -14.23327 -13.97104 -13.70585 -13.55875 -13.50995 -12.99611 -12.88738 -12.83753 -12.82496 -12.60497 -12.52636 -12.35733 -12.15541 -11.85815 -11.75094 -11.55585 -11.47606 -11.16011 -11.01035 -10.81109 -10.71395 -10.40092 -9.95437 -9.69463 -9.64857 -9.15167 -8.76143 -8.61211 -8.15118 -6.87623 -6.40291 -3.97797 2.18310 2.28700 2.62508 3.10528 3.17996 3.18967 3.22987 3.57336 4.01486 4.12255 4.33784 4.39777 4.44562 4.62891 4.71379 4.79076 5.12713 5.13953 5.23166 5.30574 5.36674 5.41684 5.48631 5.52667 5.55643 5.61365 5.63053 5.69303 5.71895 5.73625 5.78325 5.86431 5.94900 6.08109 6.17705 6.22167 6.31481 6.46407 6.71551 6.78422 7.00750 7.15015 7.23188 7.38499 7.49365 7.83833 8.03877 8.06302 8.68756 9.05739 9.75695 10.77821 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023847 B = 0.002361 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.858476 B =11858.968164 C =12441.935865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.134 4.134 3 C -0.112 4.112 4 C 0.121 3.879 5 N -0.717 5.717 6 C 0.703 3.297 7 O -0.572 6.572 8 N -0.674 5.674 9 C 0.053 3.947 10 C -0.095 4.095 11 C -0.178 4.178 12 C 0.145 3.855 13 O -0.178 6.178 14 C -0.389 4.389 15 H 0.092 0.908 16 C 0.038 3.962 17 N -0.864 5.864 18 Si 0.940 3.060 19 H -0.273 1.273 20 H -0.278 1.278 21 H -0.267 1.267 22 C -0.219 4.219 23 C -0.064 4.064 24 C -0.137 4.137 25 C -0.112 4.112 26 C -0.112 4.112 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.138 0.862 34 H 0.394 0.606 35 H 0.397 0.603 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.269 0.731 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.059 0.941 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.466 15.384 -20.911 27.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.136 4.136 3 C -0.169 4.169 4 C 0.014 3.986 5 N -0.372 5.372 6 C 0.404 3.596 7 O -0.448 6.448 8 N -0.321 5.321 9 C -0.040 4.040 10 C -0.115 4.115 11 C -0.198 4.198 12 C 0.091 3.909 13 O -0.082 6.082 14 C -0.466 4.466 15 H 0.110 0.890 16 C -0.165 4.165 17 N -0.500 5.500 18 Si 0.765 3.235 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.191 1.191 22 C -0.239 4.239 23 C -0.084 4.084 24 C -0.139 4.139 25 C -0.169 4.169 26 C -0.170 4.170 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.156 0.844 34 H 0.230 0.770 35 H 0.230 0.770 36 H 0.132 0.868 37 H 0.139 0.861 38 H 0.079 0.921 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.390 15.129 -20.294 26.369 hybrid contribution -0.383 0.281 0.235 0.530 sum -7.772 15.410 -20.058 26.462 Atomic orbital electron populations 1.21264 0.92193 1.01788 1.01824 1.22237 0.95114 0.91888 1.04347 1.21305 1.00286 0.93535 1.01816 1.21895 0.96076 0.90815 0.89833 1.44570 1.17519 1.42733 1.32387 1.15891 0.84566 0.79523 0.79666 1.90928 1.18259 1.68547 1.67107 1.42269 1.13897 1.39580 1.36373 1.17028 1.04166 0.90721 0.92101 1.20315 1.01228 0.91452 0.98545 1.19965 1.01294 1.00484 0.98041 1.19408 0.91735 0.90155 0.89565 1.83975 1.55924 1.35502 1.32760 1.21332 1.25015 0.97862 1.02370 0.89045 1.25270 0.98177 0.95892 0.97205 1.70046 1.42705 1.09157 1.28047 0.85719 0.79265 0.78704 0.79817 1.19911 1.20303 1.19148 1.21109 1.05988 0.95006 1.01825 1.20887 0.95678 0.99840 0.91978 1.22280 0.98276 0.99102 0.94219 1.21298 0.94230 1.01454 0.99935 1.21241 0.98861 0.97204 0.99654 0.91861 0.92007 0.92856 0.92095 0.92052 0.92119 0.84440 0.76978 0.76960 0.86844 0.86087 0.92094 0.85240 0.85561 0.92107 0.92171 0.92142 0.92705 0.92245 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 8.82 37.16 0.33 -0.39 16 2 C -0.13 -1.03 2.70 -154.47 -0.42 -1.45 16 3 C -0.11 -0.76 8.88 37.15 0.33 -0.43 16 4 C 0.12 1.24 5.67 -67.93 -0.39 0.86 16 5 N -0.72 -7.65 4.62 -58.68 -0.27 -7.92 16 6 C 0.70 10.54 8.41 -86.92 -0.73 9.81 16 7 O -0.57 -11.09 13.35 5.29 0.07 -11.02 16 8 N -0.67 -9.48 5.35 -14.18 -0.08 -9.56 16 9 C 0.05 0.96 6.30 -83.62 -0.53 0.43 16 10 C -0.09 -1.68 9.96 -39.42 -0.39 -2.08 16 11 C -0.18 -3.76 9.99 -39.42 -0.39 -4.15 16 12 C 0.15 3.59 6.65 -39.09 -0.26 3.33 16 13 O -0.18 -5.16 9.76 -0.02 0.00 -5.16 16 14 C -0.39 -11.11 9.48 30.88 0.29 -10.82 16 15 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 17 N -0.86 -25.65 13.67 55.48 0.76 -24.89 16 18 Si 0.94 20.98 29.55 -169.99 -5.02 15.96 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 C -0.22 -5.07 9.16 -39.42 -0.36 -5.43 16 23 C -0.06 -1.32 8.69 -39.41 -0.34 -1.67 16 24 C -0.14 -1.11 2.70 -154.47 -0.42 -1.53 16 25 C -0.11 -0.84 8.88 37.15 0.33 -0.51 16 26 C -0.11 -0.81 8.82 37.16 0.33 -0.48 16 27 H 0.06 0.39 7.92 -51.93 -0.41 -0.02 16 28 H 0.06 0.34 8.02 -51.93 -0.42 -0.07 16 29 H 0.05 0.32 5.62 -51.93 -0.29 0.03 16 30 H 0.06 0.44 7.78 -51.93 -0.40 0.03 16 31 H 0.06 0.36 8.03 -51.93 -0.42 -0.06 16 32 H 0.06 0.39 7.92 -51.93 -0.41 -0.02 16 33 H 0.14 1.71 7.21 -51.93 -0.37 1.33 16 34 H 0.39 3.09 5.44 -40.82 -0.22 2.87 16 35 H 0.40 3.99 8.84 -40.82 -0.36 3.63 16 36 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 38 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.13 3.02 5.63 -52.49 -0.30 2.72 16 40 H 0.13 2.64 6.22 -52.48 -0.33 2.31 16 41 H 0.06 0.45 7.92 -51.93 -0.41 0.04 16 42 H 0.06 0.38 8.03 -51.93 -0.42 -0.04 16 43 H 0.06 0.47 7.78 -51.93 -0.40 0.07 16 44 H 0.05 0.39 5.98 -51.93 -0.31 0.07 16 45 H 0.06 0.36 8.02 -51.93 -0.42 -0.05 16 46 H 0.06 0.46 7.92 -51.93 -0.41 0.05 16 LS Contribution 372.13 15.07 5.61 5.61 Total: -1.00 -33.67 372.13 -8.20 -41.87 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -6.56 Total: 8.64 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -2.71 Total: -13.53 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.41 Total: -42.37 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.07 Total: -16.18 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.67 -8.20 -41.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340073049.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.705 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds