Wall clock time and date at job start Tue Mar 31 2020 12:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38234 * 119.99895 * 2 1 4 4 C 1.38240 * 120.00061 * 180.34228 * 3 2 1 5 5 C 1.38234 * 119.99667 * 359.88520 * 4 3 2 6 6 C 1.50702 * 119.99485 * 180.10960 * 5 4 3 7 7 H 1.09005 * 109.46901 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.47188 * 59.98109 * 6 5 4 9 9 C 1.52997 * 109.47401 * 299.97430 * 6 5 4 10 10 N 1.46501 * 109.47381 * 184.99777 * 9 6 5 11 11 C 1.34769 * 120.00474 * 179.97438 * 10 9 6 12 12 O 1.21355 * 119.99883 * 0.02562 * 11 10 9 13 13 C 1.49451 * 120.00557 * 180.02562 * 11 10 9 14 14 O 1.21348 * 119.99444 * 0.02562 * 13 11 10 15 15 N 1.34770 * 120.00258 * 180.02562 * 13 11 10 16 16 C 1.46499 * 119.99896 * 180.02562 * 15 13 11 17 17 C 1.53004 * 109.47115 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.47174 * 179.97438 * 17 16 15 19 19 H 1.08009 * 119.99741 * 0.02562 * 18 17 16 20 20 C 1.37869 * 120.00093 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00043 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00085 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47113 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47224 * 120.00644 * 22 20 18 25 25 H 1.48504 * 109.47045 * 240.00341 * 22 20 18 26 26 C 1.38234 * 120.00244 * 0.09088 * 5 4 3 27 27 C 1.38230 * 119.99880 * 359.97438 * 26 5 4 28 28 H 1.09000 * 109.47344 * 269.72897 * 1 2 3 29 29 H 1.09003 * 109.46871 * 29.72827 * 1 2 3 30 30 H 1.09001 * 109.47017 * 149.72165 * 1 2 3 31 31 H 1.08001 * 120.00279 * 0.27436 * 3 2 1 32 32 H 1.07996 * 119.99812 * 180.02562 * 4 3 2 33 33 H 1.08997 * 109.46909 * 179.97438 * 8 6 5 34 34 H 1.09005 * 109.47050 * 299.99732 * 8 6 5 35 35 H 1.09004 * 109.47146 * 59.99614 * 8 6 5 36 36 H 1.08993 * 109.47571 * 305.00726 * 9 6 5 37 37 H 1.09003 * 109.46572 * 65.00608 * 9 6 5 38 38 H 0.97002 * 119.99478 * 0.02562 * 10 9 6 39 39 H 0.96998 * 119.99992 * 359.97438 * 15 13 11 40 40 H 1.09000 * 109.47303 * 299.99532 * 16 15 13 41 41 H 1.09002 * 109.47110 * 59.99695 * 16 15 13 42 42 H 1.09000 * 109.46617 * 299.99908 * 17 16 15 43 43 H 1.08993 * 109.47456 * 59.99968 * 17 16 15 44 44 H 0.97003 * 120.00193 * 179.97438 * 21 20 18 45 45 H 1.08001 * 119.99769 * 180.02562 * 26 5 4 46 46 H 1.08000 * 120.00376 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 -0.0072 5 6 4.2717 0.0000 -0.0119 6 6 5.7787 0.0001 -0.0172 7 1 6.1421 -1.0276 -0.0200 8 6 6.2931 0.7194 1.2314 9 6 6.2843 0.7233 -1.2671 10 7 7.7442 0.6201 -1.3341 11 6 8.4135 1.1864 -2.3576 12 8 7.8071 1.7821 -3.2236 13 6 9.9027 1.0807 -2.4262 14 8 10.5091 0.4845 -1.5605 15 7 10.5721 1.6474 -3.4495 16 6 12.0318 1.5432 -3.5170 17 6 12.5376 2.2671 -4.7665 18 6 14.0392 2.1605 -4.8356 19 1 14.5789 1.6292 -4.0655 20 6 14.7240 2.7404 -5.8823 21 7 14.0668 3.3869 -6.8202 22 14 16.5853 2.6076 -5.9684 23 1 17.0809 1.8346 -4.8014 24 1 16.9747 1.9142 -7.2224 25 1 17.1800 3.9683 -5.9500 26 6 3.5805 -1.1971 -0.0114 27 6 2.1982 -1.1971 -0.0056 28 1 -0.3634 -0.0049 1.0276 29 1 -0.3633 0.8924 -0.5096 30 1 -0.3633 -0.8875 -0.5182 31 1 1.6582 2.1325 0.0045 32 1 4.1205 2.1325 -0.0067 33 1 7.3830 0.7191 1.2278 34 1 5.9297 1.7471 1.2343 35 1 5.9328 0.2042 2.1219 36 1 5.8466 0.2652 -2.1540 37 1 5.9961 1.7735 -1.2207 38 1 8.2289 0.1436 -0.6420 39 1 10.0873 2.1235 -4.1416 40 1 12.4702 2.0008 -2.6301 41 1 12.3194 0.4928 -3.5637 42 1 12.0992 1.8099 -5.6536 43 1 12.2501 3.3174 -4.7193 44 1 14.5487 3.7952 -7.5565 45 1 4.1206 -2.1324 -0.0147 46 1 1.6582 -2.1324 -0.0048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342496595.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:51 Heat of formation + Delta-G solvation = -74.115315 kcal Electronic energy + Delta-G solvation = -24897.601718 eV Core-core repulsion = 21172.042206 eV Total energy + Delta-G solvation = -3725.559512 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.54399 -39.93409 -38.33601 -36.68256 -35.15216 -33.84005 -32.83667 -31.51183 -31.19903 -29.81693 -27.39841 -27.00988 -25.30689 -23.50085 -23.23139 -22.08829 -21.02541 -20.56477 -20.07895 -18.29460 -17.02634 -16.55431 -16.14035 -16.06098 -15.75921 -15.36693 -15.22022 -14.81066 -14.76349 -14.46838 -14.18577 -13.95556 -13.74871 -13.69404 -13.49588 -13.18110 -12.88605 -12.65686 -12.47557 -12.32911 -12.23931 -11.69632 -11.54912 -11.50471 -11.24167 -11.21233 -11.07862 -11.07267 -10.65074 -10.40674 -9.79531 -9.44457 -9.34968 -9.25676 -9.19324 -8.84877 -8.69517 -8.42051 -6.10227 -4.13882 0.94852 1.06488 1.62445 2.54274 3.27976 3.35610 3.37592 3.40247 3.43981 3.87576 4.26688 4.32885 4.40833 4.53760 4.57081 4.65669 4.67447 4.77968 4.92917 4.99184 5.09950 5.18530 5.26764 5.29449 5.32726 5.39866 5.43004 5.50704 5.66189 5.74107 5.74499 5.83673 6.05511 6.13400 6.18315 6.23953 6.24874 6.27496 6.59774 6.65664 6.69525 7.05348 7.47053 7.57931 7.67259 7.87229 7.93442 8.21379 8.34374 8.91967 9.51145 11.01267 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.038853 B = 0.001718 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.488957 B =16298.319353 C =16664.070542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.090 4.090 3 C -0.119 4.119 4 C -0.107 4.107 5 C -0.080 4.080 6 C -0.063 4.063 7 H 0.088 0.912 8 C -0.148 4.148 9 C 0.126 3.874 10 N -0.705 5.705 11 C 0.507 3.493 12 O -0.520 6.520 13 C 0.497 3.503 14 O -0.534 6.534 15 N -0.686 5.686 16 C 0.119 3.881 17 C 0.010 3.990 18 C -0.523 4.523 19 H 0.061 0.939 20 C 0.059 3.941 21 N -0.892 5.892 22 Si 0.898 3.102 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.109 4.109 27 C -0.120 4.120 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.412 0.588 39 H 0.411 0.589 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.262 0.738 45 H 0.123 0.877 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.531 -7.422 16.343 32.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.090 4.090 3 C -0.137 4.137 4 C -0.125 4.125 5 C -0.081 4.081 6 C -0.082 4.082 7 H 0.106 0.894 8 C -0.205 4.205 9 C 0.003 3.997 10 N -0.360 5.360 11 C 0.288 3.712 12 O -0.395 6.395 13 C 0.277 3.723 14 O -0.413 6.413 15 N -0.337 5.337 16 C -0.003 4.003 17 C -0.028 4.028 18 C -0.561 4.561 19 H 0.079 0.921 20 C -0.143 4.143 21 N -0.530 5.530 22 Si 0.725 3.275 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.127 4.127 27 C -0.138 4.138 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.249 0.751 39 H 0.246 0.754 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.044 0.956 43 H 0.044 0.956 44 H 0.072 0.928 45 H 0.141 0.859 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -26.485 -7.303 16.147 31.868 hybrid contribution 0.966 -0.005 -0.194 0.985 sum -25.519 -7.309 15.954 30.970 Atomic orbital electron populations 1.20802 0.91265 1.02841 1.02290 1.19951 0.96102 0.93267 0.99648 1.21039 0.94142 0.97592 1.00885 1.21031 0.94134 0.97743 0.99586 1.19608 0.94253 0.93427 1.00809 1.20366 0.91621 1.01113 0.95101 0.89391 1.21906 1.01392 1.00681 0.96513 1.21506 0.79041 1.01335 0.97868 1.45753 1.07690 1.55897 1.26635 1.20453 0.88992 0.79589 0.82147 1.90764 1.69800 1.40793 1.38113 1.19973 0.87601 0.81219 0.83533 1.90725 1.69458 1.42298 1.38775 1.46234 1.10038 1.52696 1.24694 1.21937 0.75037 1.01513 1.01814 1.19369 0.96673 0.95864 0.90850 1.21053 0.91144 1.35059 1.08887 0.92106 1.25003 0.98823 0.94995 0.95471 1.69972 1.35686 1.35352 1.12039 0.86442 0.85117 0.77843 0.78062 1.19581 1.20933 1.20927 1.21061 0.94179 0.97482 0.99951 1.21018 0.94120 0.97560 1.01096 0.91216 0.91508 0.91549 0.86041 0.85871 0.91794 0.92035 0.91987 0.90776 0.90742 0.75115 0.75375 0.91853 0.91856 0.95639 0.95633 0.92835 0.85943 0.86097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.57 10.01 36.01 0.36 -0.21 16 2 C -0.09 -0.64 5.88 -104.62 -0.62 -1.25 16 3 C -0.12 -0.87 9.70 -39.58 -0.38 -1.26 16 4 C -0.11 -0.82 8.76 -39.58 -0.35 -1.17 16 5 C -0.08 -0.62 4.78 -104.62 -0.50 -1.12 16 6 C -0.06 -0.45 2.60 -91.77 -0.24 -0.69 16 7 H 0.09 0.57 7.88 -51.93 -0.41 0.16 16 8 C -0.15 -0.99 8.88 37.16 0.33 -0.66 16 9 C 0.13 1.18 4.80 -4.04 -0.02 1.16 16 10 N -0.71 -7.96 5.28 -60.73 -0.32 -8.28 16 11 C 0.51 7.59 7.89 -11.59 -0.09 7.50 16 12 O -0.52 -8.87 16.48 5.49 0.09 -8.78 16 13 C 0.50 8.56 7.89 -11.59 -0.09 8.46 16 14 O -0.53 -10.03 16.48 5.50 0.09 -9.94 16 15 N -0.69 -12.55 5.55 -60.73 -0.34 -12.89 16 16 C 0.12 2.48 5.61 -4.04 -0.02 2.46 16 17 C 0.01 0.25 5.09 -27.88 -0.14 0.10 16 18 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 19 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 22 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 26 C -0.11 -0.80 9.67 -39.59 -0.38 -1.18 16 27 C -0.12 -0.85 9.70 -39.59 -0.38 -1.24 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 30 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 31 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.12 0.84 7.16 -52.49 -0.38 0.46 16 33 H 0.06 0.44 7.18 -51.93 -0.37 0.06 16 34 H 0.06 0.41 7.39 -51.93 -0.38 0.03 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.72 7.57 -51.93 -0.39 0.33 16 38 H 0.41 4.14 7.13 -40.82 -0.29 3.85 16 39 H 0.41 7.19 7.94 -40.82 -0.32 6.87 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.12 0.72 7.95 -52.49 -0.42 0.30 16 46 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 LS Contribution 389.30 15.07 5.87 5.87 Total: -1.00 -31.87 389.30 -8.99 -40.86 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -7.15 Total: 4.52 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -2.94 Total: -2.22 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.08 Total: -46.54 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.18 Total: -18.72 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.87 -8.99 -40.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342496595.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.257 kcal (2) G-P(sol) polarization free energy of solvation -31.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds