Wall clock time and date at job start Tue Mar 31 2020 12:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38234 * 119.99895 * 2 1 4 4 C 1.38240 * 120.00061 * 180.34228 * 3 2 1 5 5 C 1.38234 * 119.99667 * 359.88520 * 4 3 2 6 6 C 1.50702 * 119.99485 * 180.10960 * 5 4 3 7 7 H 1.09005 * 109.46901 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.47188 * 59.98109 * 6 5 4 9 9 C 1.52997 * 109.47401 * 299.97430 * 6 5 4 10 10 N 1.46501 * 109.47381 * 184.99777 * 9 6 5 11 11 C 1.34769 * 120.00474 * 179.97438 * 10 9 6 12 12 O 1.21355 * 119.99883 * 0.02562 * 11 10 9 13 13 C 1.49451 * 120.00557 * 180.02562 * 11 10 9 14 14 O 1.21348 * 119.99444 * 0.02562 * 13 11 10 15 15 N 1.34770 * 120.00258 * 180.02562 * 13 11 10 16 16 C 1.46499 * 119.99896 * 180.02562 * 15 13 11 17 17 C 1.53004 * 109.47115 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.47174 * 179.97438 * 17 16 15 19 19 H 1.08009 * 119.99741 * 0.02562 * 18 17 16 20 20 C 1.37869 * 120.00093 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00043 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00085 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47113 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47224 * 120.00644 * 22 20 18 25 25 H 1.48504 * 109.47045 * 240.00341 * 22 20 18 26 26 C 1.38234 * 120.00244 * 0.09088 * 5 4 3 27 27 C 1.38230 * 119.99880 * 359.97438 * 26 5 4 28 28 H 1.09000 * 109.47344 * 269.72897 * 1 2 3 29 29 H 1.09003 * 109.46871 * 29.72827 * 1 2 3 30 30 H 1.09001 * 109.47017 * 149.72165 * 1 2 3 31 31 H 1.08001 * 120.00279 * 0.27436 * 3 2 1 32 32 H 1.07996 * 119.99812 * 180.02562 * 4 3 2 33 33 H 1.08997 * 109.46909 * 179.97438 * 8 6 5 34 34 H 1.09005 * 109.47050 * 299.99732 * 8 6 5 35 35 H 1.09004 * 109.47146 * 59.99614 * 8 6 5 36 36 H 1.08993 * 109.47571 * 305.00726 * 9 6 5 37 37 H 1.09003 * 109.46572 * 65.00608 * 9 6 5 38 38 H 0.97002 * 119.99478 * 0.02562 * 10 9 6 39 39 H 0.96998 * 119.99992 * 359.97438 * 15 13 11 40 40 H 1.09000 * 109.47303 * 299.99532 * 16 15 13 41 41 H 1.09002 * 109.47110 * 59.99695 * 16 15 13 42 42 H 1.09000 * 109.46617 * 299.99908 * 17 16 15 43 43 H 1.08993 * 109.47456 * 59.99968 * 17 16 15 44 44 H 0.97003 * 120.00193 * 179.97438 * 21 20 18 45 45 H 1.08001 * 119.99769 * 180.02562 * 26 5 4 46 46 H 1.08000 * 120.00376 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 -0.0072 5 6 4.2717 0.0000 -0.0119 6 6 5.7787 0.0001 -0.0172 7 1 6.1421 -1.0276 -0.0200 8 6 6.2931 0.7194 1.2314 9 6 6.2843 0.7233 -1.2671 10 7 7.7442 0.6201 -1.3341 11 6 8.4135 1.1864 -2.3576 12 8 7.8071 1.7821 -3.2236 13 6 9.9027 1.0807 -2.4262 14 8 10.5091 0.4845 -1.5605 15 7 10.5721 1.6474 -3.4495 16 6 12.0318 1.5432 -3.5170 17 6 12.5376 2.2671 -4.7665 18 6 14.0392 2.1605 -4.8356 19 1 14.5789 1.6292 -4.0655 20 6 14.7240 2.7404 -5.8823 21 7 14.0668 3.3869 -6.8202 22 14 16.5853 2.6076 -5.9684 23 1 17.0809 1.8346 -4.8014 24 1 16.9747 1.9142 -7.2224 25 1 17.1800 3.9683 -5.9500 26 6 3.5805 -1.1971 -0.0114 27 6 2.1982 -1.1971 -0.0056 28 1 -0.3634 -0.0049 1.0276 29 1 -0.3633 0.8924 -0.5096 30 1 -0.3633 -0.8875 -0.5182 31 1 1.6582 2.1325 0.0045 32 1 4.1205 2.1325 -0.0067 33 1 7.3830 0.7191 1.2278 34 1 5.9297 1.7471 1.2343 35 1 5.9328 0.2042 2.1219 36 1 5.8466 0.2652 -2.1540 37 1 5.9961 1.7735 -1.2207 38 1 8.2289 0.1436 -0.6420 39 1 10.0873 2.1235 -4.1416 40 1 12.4702 2.0008 -2.6301 41 1 12.3194 0.4928 -3.5637 42 1 12.0992 1.8099 -5.6536 43 1 12.2501 3.3174 -4.7193 44 1 14.5487 3.7952 -7.5565 45 1 4.1206 -2.1324 -0.0147 46 1 1.6582 -2.1324 -0.0048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342496595.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:50 Heat of formation + Delta-G solvation = -93.845165 kcal Electronic energy + Delta-G solvation = -24898.457269 eV Core-core repulsion = 21172.042206 eV Total energy + Delta-G solvation = -3726.415063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.74984 -40.59857 -39.62635 -37.53600 -36.74350 -34.99409 -34.53889 -32.08818 -31.74036 -31.68548 -28.34550 -27.60455 -26.92890 -24.80932 -23.83273 -22.97107 -22.60706 -21.56732 -20.99791 -19.56351 -18.58846 -17.95005 -17.28583 -17.06651 -16.63767 -16.45992 -16.37877 -16.04003 -15.94600 -15.78207 -15.07433 -14.95781 -14.62132 -14.42719 -14.31799 -14.27941 -14.19721 -13.81765 -13.25335 -13.19080 -12.99197 -12.96059 -12.85850 -12.71869 -12.50909 -12.29857 -12.27975 -12.11275 -11.77844 -11.68466 -11.62390 -11.41622 -10.71976 -10.62199 -10.36561 -10.19721 -9.79918 -9.38685 -8.23424 -6.34646 0.31305 0.40384 0.52690 1.31558 1.42708 1.44115 1.56973 2.11371 2.40008 2.66872 2.84652 3.11700 3.42108 3.66389 3.76044 3.95698 4.08194 4.10790 4.17723 4.36405 4.38771 4.45324 4.49574 4.58728 4.65763 4.73271 4.81302 4.83594 4.85764 4.90573 5.00405 5.02518 5.07729 5.13719 5.22466 5.30165 5.32928 5.42489 5.54840 5.54853 5.72138 5.74143 5.75494 5.91622 6.12906 6.14605 6.35262 6.69839 6.79859 6.92050 7.35091 8.88778 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.038853 B = 0.001718 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.488957 B =16298.319353 C =16664.070542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.099 4.099 3 C -0.132 4.132 4 C -0.118 4.118 5 C -0.090 4.090 6 C -0.052 4.052 7 H 0.099 0.901 8 C -0.146 4.146 9 C 0.126 3.874 10 N -0.684 5.684 11 C 0.514 3.486 12 O -0.543 6.543 13 C 0.501 3.499 14 O -0.548 6.548 15 N -0.689 5.689 16 C 0.138 3.862 17 C 0.017 3.983 18 C -0.544 4.544 19 H 0.065 0.935 20 C 0.005 3.995 21 N -0.928 5.928 22 Si 0.968 3.032 23 H -0.262 1.262 24 H -0.279 1.279 25 H -0.278 1.278 26 C -0.117 4.117 27 C -0.130 4.130 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.421 0.579 39 H 0.414 0.586 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.008 0.992 43 H 0.008 0.992 44 H 0.265 0.735 45 H 0.136 0.864 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.903 -8.331 17.545 33.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.099 4.099 3 C -0.150 4.150 4 C -0.136 4.136 5 C -0.091 4.091 6 C -0.071 4.071 7 H 0.117 0.883 8 C -0.204 4.204 9 C 0.004 3.996 10 N -0.338 5.338 11 C 0.294 3.706 12 O -0.420 6.420 13 C 0.281 3.719 14 O -0.427 6.427 15 N -0.340 5.340 16 C 0.015 3.985 17 C -0.021 4.021 18 C -0.582 4.582 19 H 0.083 0.917 20 C -0.194 4.194 21 N -0.568 5.568 22 Si 0.793 3.207 23 H -0.186 1.186 24 H -0.204 1.204 25 H -0.204 1.204 26 C -0.135 4.135 27 C -0.148 4.148 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.259 0.741 39 H 0.250 0.750 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.026 0.974 43 H 0.026 0.974 44 H 0.074 0.926 45 H 0.154 0.846 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -26.885 -8.236 17.394 33.063 hybrid contribution 0.978 0.258 -0.523 1.138 sum -25.908 -7.978 16.870 31.929 Atomic orbital electron populations 1.20836 0.89881 1.03436 1.02951 1.20269 0.97318 0.93228 0.99085 1.21277 0.94272 0.98377 1.01028 1.21191 0.94540 0.98062 0.99844 1.19670 0.94329 0.93653 1.01444 1.20283 0.91446 1.01384 0.93985 0.88280 1.21900 1.01266 1.00685 0.96512 1.21641 0.77387 1.01664 0.98928 1.45714 1.08554 1.54166 1.25341 1.19970 0.87718 0.80084 0.82860 1.90766 1.69706 1.42300 1.39275 1.20314 0.88698 0.80242 0.82618 1.90715 1.70130 1.42716 1.39109 1.46076 1.09031 1.53381 1.25507 1.21484 0.76642 1.00678 0.99683 1.19195 0.95839 0.95055 0.91967 1.21483 0.92587 1.35040 1.09118 0.91659 1.25918 1.03902 0.94524 0.95051 1.70087 1.37724 1.36242 1.12730 0.85345 0.78997 0.78025 0.78352 1.18568 1.20422 1.20403 1.21298 0.94568 0.97935 0.99714 1.21292 0.94298 0.98314 1.00903 0.90447 0.91061 0.90841 0.84963 0.85511 0.91866 0.92156 0.91275 0.91356 0.90847 0.74117 0.74954 0.91943 0.91961 0.97406 0.97385 0.92598 0.84642 0.84588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 71.24 0.71 -0.26 16 2 C -0.10 -1.30 5.88 -19.87 -0.12 -1.41 16 3 C -0.13 -1.83 9.70 22.27 0.22 -1.61 16 4 C -0.12 -1.73 8.76 22.27 0.20 -1.53 16 5 C -0.09 -1.28 4.78 -19.87 -0.09 -1.37 16 6 C -0.05 -0.67 2.60 -11.54 -0.03 -0.70 16 7 H 0.10 1.06 7.88 -2.38 -0.02 1.05 16 8 C -0.15 -1.72 8.88 71.98 0.64 -1.08 16 9 C 0.13 2.23 4.80 86.38 0.42 2.64 16 10 N -0.68 -14.51 5.28 -464.42 -2.45 -16.96 16 11 C 0.51 14.95 7.89 87.27 0.69 15.64 16 12 O -0.54 -18.30 16.48 -3.26 -0.05 -18.35 16 13 C 0.50 16.90 7.89 87.27 0.69 17.58 16 14 O -0.55 -19.99 16.48 -3.24 -0.05 -20.05 16 15 N -0.69 -25.20 5.55 -464.41 -2.58 -27.78 16 16 C 0.14 5.78 5.61 86.38 0.48 6.26 16 17 C 0.02 0.86 5.09 29.85 0.15 1.01 16 18 C -0.54 -30.03 9.11 25.60 0.23 -29.80 16 19 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 20 C 0.00 0.26 5.46 84.65 0.46 0.72 16 21 N -0.93 -54.89 13.29 21.44 0.28 -54.60 16 22 Si 0.97 43.37 29.54 68.60 2.03 45.40 16 23 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 25 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 26 C -0.12 -1.56 9.67 22.27 0.22 -1.35 16 27 C -0.13 -1.67 9.70 22.27 0.22 -1.46 16 28 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.07 0.53 8.08 -2.39 -0.02 0.51 16 30 H 0.07 0.51 8.09 -2.39 -0.02 0.49 16 31 H 0.13 1.42 8.06 -2.91 -0.02 1.40 16 32 H 0.13 1.65 7.16 -2.91 -0.02 1.63 16 33 H 0.06 0.75 7.18 -2.39 -0.02 0.73 16 34 H 0.06 0.73 7.39 -2.38 -0.02 0.71 16 35 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.07 1.36 7.57 -2.39 -0.02 1.34 16 38 H 0.42 7.70 7.13 -92.71 -0.66 7.04 16 39 H 0.41 14.68 7.94 -92.71 -0.74 13.94 16 40 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 45 H 0.14 1.35 7.95 -2.91 -0.02 1.33 16 46 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -67.04 389.30 1.85 -65.20 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: -0.41 Total: 23.85 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 5.08 Total: 3.29 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -4.74 Total: -99.34 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -0.11 Total: -38.40 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -67.04 1.85 -65.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342496595.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.649 kcal (2) G-P(sol) polarization free energy of solvation -67.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds