Wall clock time and date at job start Tue Mar 31 2020 12:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99677 * 2 1 4 4 H 1.48502 * 109.47335 * 90.13969 * 3 2 1 5 5 H 1.48506 * 109.47071 * 210.13545 * 3 2 1 6 6 H 1.48501 * 109.47616 * 330.13484 * 3 2 1 7 7 C 1.37873 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00067 * 353.34609 * 7 2 1 9 9 C 1.50704 * 119.99642 * 173.33848 * 7 2 1 10 10 O 1.45199 * 112.84973 * 297.69186 * 9 7 2 11 11 C 1.34750 * 117.00504 * 295.79676 * 10 9 7 12 12 O 1.21530 * 119.99770 * 3.37292 * 11 10 9 13 13 C 1.47281 * 120.00191 * 183.37890 * 11 10 9 14 14 C 1.41354 * 126.42734 * 4.71542 * 13 11 10 15 15 N 1.30424 * 108.01291 * 180.02562 * 14 13 11 16 16 N 1.39927 * 108.92167 * 359.97438 * 15 14 13 17 17 C 1.46501 * 125.74727 * 179.97438 * 16 15 14 18 18 C 1.53000 * 109.47614 * 214.97498 * 17 16 15 19 19 C 1.52998 * 109.47469 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.46777 * 60.00159 * 19 18 17 21 21 C 1.53002 * 109.47304 * 299.99934 * 20 19 18 22 22 C 1.53000 * 109.47236 * 94.97252 * 17 16 15 23 23 C 1.34226 * 108.51199 * 359.72981 * 16 15 14 24 24 C 1.53788 * 113.61092 * 166.50174 * 9 7 2 25 25 C 1.53957 * 87.01627 * 220.04805 * 24 9 7 26 26 C 1.53776 * 87.11295 * 25.36258 * 25 24 9 27 27 H 0.96999 * 120.00029 * 359.97438 * 1 2 3 28 28 H 1.08003 * 125.98941 * 0.02562 * 14 13 11 29 29 H 1.09000 * 109.47083 * 334.97723 * 17 16 15 30 30 H 1.09000 * 109.47079 * 300.00227 * 18 17 16 31 31 H 1.08998 * 109.46535 * 59.99812 * 18 17 16 32 32 H 1.08991 * 109.47311 * 300.00545 * 19 18 17 33 33 H 1.08993 * 109.47345 * 180.02562 * 19 18 17 34 34 H 1.08999 * 109.46835 * 179.97438 * 20 19 18 35 35 H 1.09000 * 109.46995 * 59.99923 * 20 19 18 36 36 H 1.09000 * 109.46986 * 300.00479 * 21 20 19 37 37 H 1.08999 * 109.47371 * 180.02562 * 21 20 19 38 38 H 1.09005 * 109.47697 * 300.00730 * 22 17 16 39 39 H 1.09000 * 109.47195 * 60.00417 * 22 17 16 40 40 H 1.08003 * 126.29600 * 180.26636 * 23 16 15 41 41 H 1.08998 * 113.61199 * 334.56412 * 24 9 7 42 42 H 1.08997 * 113.61560 * 105.47042 * 24 9 7 43 43 H 1.09001 * 113.53572 * 270.80866 * 25 24 9 44 44 H 1.09004 * 113.73981 * 139.94444 * 25 24 9 45 45 H 1.08994 * 113.61718 * 220.09110 * 26 25 24 46 46 H 1.09007 * 113.69351 * 89.19631 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4995 2.0448 1.4001 5 1 3.5452 1.4411 -0.7029 6 1 1.4451 2.6536 -0.6972 7 6 2.0045 -1.1940 0.0005 8 1 1.4700 -2.1261 0.1093 9 6 3.5039 -1.1984 -0.1509 10 8 3.9440 -0.6486 -1.4206 11 6 3.5845 -1.3167 -2.5342 12 8 2.8702 -2.2964 -2.4511 13 6 4.0572 -0.8597 -3.8521 14 6 4.9616 0.1983 -4.0989 15 7 5.1284 0.2937 -5.3889 16 7 4.3515 -0.6839 -6.0204 17 6 4.2629 -0.9048 -7.4659 18 6 2.8420 -1.3405 -7.8293 19 6 2.7494 -1.5706 -9.3391 20 6 3.7386 -2.6631 -9.7500 21 6 5.1596 -2.2275 -9.3867 22 6 5.2521 -1.9975 -7.8764 23 6 3.7051 -1.3886 -5.0785 24 6 4.1539 -2.5489 0.1940 25 6 5.2765 -1.7437 0.8735 26 6 4.2474 -0.6169 1.0632 27 1 -0.4850 0.8400 0.0004 28 1 5.4319 0.8188 -3.3504 29 1 4.5048 0.0197 -7.9903 30 1 2.6001 -2.2650 -7.3050 31 1 2.1374 -0.5619 -7.5369 32 1 2.9911 -0.6459 -9.8630 33 1 1.7370 -1.8805 -9.5980 34 1 3.6723 -2.8274 -10.8255 35 1 3.4969 -3.5878 -9.2260 36 1 5.4012 -1.3028 -9.9106 37 1 5.8643 -3.0057 -9.6798 38 1 6.2644 -1.6873 -7.6175 39 1 5.0103 -2.9221 -7.3522 40 1 3.0310 -2.2152 -5.2485 41 1 3.5673 -3.1512 0.8876 42 1 4.4851 -3.1098 -0.6798 43 1 6.0925 -1.4811 0.2003 44 1 5.6241 -2.1798 1.8101 45 1 4.6539 0.3794 0.8900 46 1 3.6857 -0.6889 1.9946 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345761886.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:40 Heat of formation + Delta-G solvation = -14.261868 kcal Electronic energy + Delta-G solvation = -27310.434737 eV Core-core repulsion = 23587.470665 eV Total energy + Delta-G solvation = -3722.964072 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -42.57243 -41.15303 -39.37264 -38.64935 -36.00669 -34.53640 -34.16131 -31.92818 -31.41147 -30.04778 -28.91270 -26.60145 -25.63317 -24.03931 -23.78871 -23.35997 -21.83708 -21.57210 -20.39807 -20.04631 -19.39043 -18.53169 -17.20750 -16.98356 -16.90558 -16.47724 -15.97987 -15.95398 -15.71496 -15.46937 -15.08843 -14.96713 -14.88694 -14.55089 -14.01563 -13.81250 -13.60136 -13.49144 -13.25773 -13.25424 -13.20243 -12.90182 -12.48621 -12.19426 -12.15689 -12.10386 -11.99693 -11.83479 -11.60556 -11.57497 -11.43660 -11.29767 -11.16446 -10.96306 -10.58550 -10.57849 -10.32703 -9.79800 -8.35842 -6.44757 0.40101 1.06910 1.20946 1.34127 1.37557 1.57275 2.14763 2.36288 2.41448 3.03421 3.30679 3.59336 3.63633 3.75149 3.85355 3.87745 3.93473 4.05396 4.09692 4.14884 4.20713 4.24022 4.34003 4.39602 4.43148 4.45455 4.57406 4.75304 4.84263 4.87360 4.95731 4.97722 4.99825 5.08467 5.11668 5.11742 5.13329 5.26938 5.29690 5.32094 5.35644 5.47305 5.58405 5.63466 5.79789 5.91128 6.35797 6.44348 6.62193 7.21667 7.32038 8.79730 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018968 B = 0.003499 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.800238 B = 8000.558866 C = 8379.939921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.027 3.973 3 Si 0.922 3.078 4 H -0.257 1.257 5 H -0.212 1.212 6 H -0.300 1.300 7 C -0.515 4.515 8 H 0.027 0.973 9 C 0.176 3.824 10 O -0.350 6.350 11 C 0.531 3.469 12 O -0.543 6.543 13 C -0.301 4.301 14 C 0.098 3.902 15 N -0.312 5.312 16 N -0.346 5.346 17 C 0.155 3.845 18 C -0.134 4.134 19 C -0.109 4.109 20 C -0.123 4.123 21 C -0.109 4.109 22 C -0.126 4.126 23 C 0.138 3.862 24 C -0.143 4.143 25 C -0.115 4.115 26 C -0.127 4.127 27 H 0.266 0.734 28 H 0.209 0.791 29 H 0.113 0.887 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.199 0.801 41 H 0.077 0.923 42 H 0.049 0.951 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.072 0.928 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.515 -1.574 -19.234 23.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.173 4.173 3 Si 0.745 3.255 4 H -0.181 1.181 5 H -0.134 1.134 6 H -0.227 1.227 7 C -0.552 4.552 8 H 0.045 0.955 9 C 0.141 3.859 10 O -0.267 6.267 11 C 0.377 3.623 12 O -0.434 6.434 13 C -0.314 4.314 14 C -0.089 4.089 15 N -0.131 5.131 16 N -0.124 5.124 17 C 0.055 3.945 18 C -0.172 4.172 19 C -0.147 4.147 20 C -0.161 4.161 21 C -0.147 4.147 22 C -0.164 4.164 23 C -0.015 4.015 24 C -0.181 4.181 25 C -0.152 4.152 26 C -0.164 4.164 27 H 0.075 0.925 28 H 0.225 0.775 29 H 0.131 0.869 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.216 0.784 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.091 0.909 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.772 -1.131 -20.266 24.529 hybrid contribution -1.260 0.030 1.137 1.697 sum 12.512 -1.101 -19.130 22.885 Atomic orbital electron populations 1.70104 1.08557 1.28209 1.50876 1.25892 0.95296 1.03358 0.92716 0.86174 0.81466 0.77894 0.79999 1.18135 1.13445 1.22670 1.21187 0.91310 0.92923 1.49787 0.95493 1.21181 0.91953 0.93648 0.79112 1.86492 1.71413 1.53242 1.15513 1.20251 0.76861 0.80460 0.84720 1.90759 1.36166 1.28261 1.88209 1.19678 1.13057 1.07681 0.91014 1.24385 0.95198 0.95585 0.93686 1.77102 1.17293 1.11356 1.07352 1.49043 1.32461 1.23347 1.07500 1.21829 0.98279 1.01585 0.72797 1.22023 0.93316 1.02424 0.99476 1.21481 1.00829 1.00179 0.92192 1.21622 0.93951 0.98299 1.02216 1.21502 0.97866 1.02779 0.92588 1.21981 0.98355 0.97420 0.98692 1.22988 0.95050 0.96317 0.87127 1.23278 0.98186 0.96558 1.00041 1.22822 0.95567 0.95494 1.01340 1.23210 0.97264 0.99231 0.96693 0.92519 0.77476 0.86941 0.90721 0.91558 0.90573 0.90180 0.89962 0.91859 0.90619 0.90177 0.91663 0.91545 0.78428 0.90461 0.93200 0.89177 0.88927 0.90895 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.94 13.96 21.45 0.30 -60.64 16 2 C 0.03 1.61 5.47 84.65 0.46 2.07 16 3 Si 0.92 45.01 25.15 68.60 1.73 46.74 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.21 -9.54 5.43 99.48 0.54 -9.00 16 6 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 7 C -0.51 -31.00 7.89 25.60 0.20 -30.80 16 8 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 9 C 0.18 8.56 0.10 -11.01 0.00 8.56 16 10 O -0.35 -16.48 7.67 -56.61 -0.43 -16.92 16 11 C 0.53 24.97 7.33 70.20 0.51 25.48 16 12 O -0.54 -29.16 15.09 19.74 0.30 -28.87 16 13 C -0.30 -11.30 6.12 -20.16 -0.12 -11.43 16 14 C 0.10 3.19 11.87 85.67 1.02 4.21 16 15 N -0.31 -9.38 12.50 -56.24 -0.70 -10.08 16 16 N -0.35 -9.10 3.49 -325.70 -1.14 -10.23 16 17 C 0.15 2.76 3.18 44.99 0.14 2.90 16 18 C -0.13 -2.06 4.84 30.59 0.15 -1.91 16 19 C -0.11 -1.11 5.92 30.60 0.18 -0.93 16 20 C -0.12 -1.09 5.92 30.60 0.18 -0.91 16 21 C -0.11 -1.04 5.93 30.61 0.18 -0.86 16 22 C -0.13 -1.86 5.53 30.61 0.17 -1.70 16 23 C 0.14 4.25 10.40 84.30 0.88 5.12 16 24 C -0.14 -6.08 6.93 31.18 0.22 -5.86 16 25 C -0.12 -3.82 8.03 31.18 0.25 -3.57 16 26 C -0.13 -5.04 5.65 31.12 0.18 -4.86 16 27 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 28 H 0.21 5.83 8.06 -2.91 -0.02 5.81 16 29 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 1.19 7.13 -2.39 -0.02 1.17 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 32 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.08 0.65 8.14 -2.39 -0.02 0.64 16 38 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.20 5.39 7.24 -2.91 -0.02 5.37 16 41 H 0.08 3.35 8.09 -2.39 -0.02 3.33 16 42 H 0.05 2.15 7.41 -2.39 -0.02 2.13 16 43 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 44 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.07 2.70 6.79 -2.39 -0.02 2.68 16 46 H 0.09 3.74 8.09 -2.38 -0.02 3.72 16 Total: -1.00 -78.50 365.50 5.44 -73.06 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.79 Total: 21.41 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: 4.60 Total: -14.47 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -1.54 Total: -80.95 kcal Atomic # 8 Polarization: -45.65 SS G_CDS: -0.14 Total: -45.79 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.73 Total: 46.74 kcal Total: -78.50 5.44 -73.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345761886.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.802 kcal (2) G-P(sol) polarization free energy of solvation -78.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds