Wall clock time and date at job start Tue Mar 31 2020 12:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38241 * 119.99485 * 2 1 4 4 C 1.38238 * 119.99999 * 179.97438 * 3 2 1 5 5 C 1.50694 * 120.00092 * 180.02562 * 4 3 2 6 6 C 1.38235 * 119.99783 * 359.97438 * 4 3 2 7 7 C 1.38241 * 120.00218 * 0.02562 * 6 4 3 8 8 C 1.50699 * 120.00160 * 179.97438 * 7 6 4 9 9 H 1.09001 * 109.47358 * 19.99633 * 8 7 6 10 10 C 1.53006 * 109.46866 * 260.00038 * 8 7 6 11 11 N 1.46496 * 109.47248 * 140.00274 * 8 7 6 12 12 C 1.34779 * 119.99965 * 205.00258 * 11 8 7 13 13 O 1.21343 * 119.99819 * 359.97438 * 12 11 8 14 14 C 1.49447 * 119.99891 * 180.02562 * 12 11 8 15 15 O 1.21357 * 120.00117 * 359.97438 * 14 12 11 16 16 N 1.34779 * 120.00293 * 179.97438 * 14 12 11 17 17 C 1.46499 * 120.00331 * 179.97438 * 16 14 12 18 18 C 1.53001 * 109.47110 * 179.97438 * 17 16 14 19 19 C 1.50690 * 109.47028 * 180.02562 * 18 17 16 20 20 H 1.08004 * 120.00328 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99920 * 180.02562 * 19 18 17 22 22 N 1.31506 * 120.00205 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00140 * 179.97438 * 21 19 18 24 24 H 1.48510 * 109.46876 * 89.99982 * 23 21 19 25 25 H 1.48499 * 109.47319 * 209.99882 * 23 21 19 26 26 H 1.48497 * 109.47266 * 330.00546 * 23 21 19 27 27 C 1.38231 * 120.00492 * 180.23550 * 2 1 3 28 28 H 1.09002 * 109.47220 * 90.00395 * 1 2 3 29 29 H 1.09003 * 109.46811 * 209.99806 * 1 2 3 30 30 H 1.09001 * 109.47464 * 329.99606 * 1 2 3 31 31 H 1.08003 * 120.00194 * 0.02562 * 3 2 1 32 32 H 1.09003 * 109.47344 * 269.97664 * 5 4 3 33 33 H 1.08998 * 109.47472 * 29.98345 * 5 4 3 34 34 H 1.09004 * 109.46984 * 149.97657 * 5 4 3 35 35 H 1.07995 * 120.00075 * 180.02562 * 6 4 3 36 36 H 1.09001 * 109.47002 * 179.97438 * 10 8 7 37 37 H 1.08993 * 109.46955 * 300.00219 * 10 8 7 38 38 H 1.09000 * 109.47050 * 60.00048 * 10 8 7 39 39 H 0.97003 * 119.99991 * 24.99332 * 11 8 7 40 40 H 0.97001 * 119.99780 * 359.97438 * 16 14 12 41 41 H 1.08999 * 109.47270 * 299.99923 * 17 16 14 42 42 H 1.09007 * 109.46830 * 59.99912 * 17 16 14 43 43 H 1.09001 * 109.47411 * 300.00861 * 18 17 16 44 44 H 1.09005 * 109.46463 * 60.00404 * 18 17 16 45 45 H 0.97000 * 120.00601 * 179.97438 * 22 21 19 46 46 H 1.08002 * 120.00019 * 0.04199 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1973 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.3338 2.5025 0.0011 6 6 4.2717 0.0003 0.0016 7 6 3.5806 -1.1970 0.0016 8 6 4.3342 -2.5020 0.0022 9 1 5.3521 -2.3337 0.3540 10 6 4.3728 -3.0692 -1.4183 11 7 3.6618 -3.4538 0.8899 12 6 4.3596 -4.4617 1.4500 13 8 5.5448 -4.5809 1.2186 14 6 3.6735 -5.4330 2.3551 15 8 2.4881 -5.3140 2.5862 16 7 4.3712 -6.4411 2.9149 17 6 3.6988 -7.3930 3.8026 18 6 4.7091 -8.4295 4.2983 19 6 4.0173 -9.4089 5.2109 20 1 2.9623 -9.3030 5.4165 21 6 4.7311 -10.4403 5.7834 22 7 6.0157 -10.5691 5.5335 23 14 3.8736 -11.6541 6.9153 24 1 3.3498 -12.7910 6.1162 25 1 4.8409 -12.1606 7.9219 26 1 2.7485 -10.9757 7.6074 27 6 2.1983 -1.1970 -0.0049 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6580 2.1326 0.0004 32 1 4.5163 2.8172 -1.0264 33 1 3.7444 3.2621 0.5146 34 1 5.2859 2.3722 0.5157 35 1 5.3517 0.0003 0.0024 36 1 4.9183 -4.0129 -1.4180 37 1 3.3550 -3.2375 -1.7701 38 1 4.8731 -2.3610 -2.0788 39 1 2.7142 -3.3586 1.0746 40 1 5.3187 -6.5365 2.7300 41 1 3.2772 -6.8597 4.6547 42 1 2.9001 -7.8962 3.2576 43 1 5.1305 -8.9627 3.4460 44 1 5.5080 -7.9264 4.8432 45 1 6.5180 -11.2944 5.9365 46 1 1.6583 -2.1324 -0.0095 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346168298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:50 Heat of formation + Delta-G solvation = -72.749099 kcal Electronic energy + Delta-G solvation = -25407.171565 eV Core-core repulsion = 21681.671296 eV Total energy + Delta-G solvation = -3725.500269 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.73506 -39.86954 -38.32139 -36.18275 -35.01923 -33.87873 -32.90391 -32.32936 -30.04997 -29.74739 -27.64136 -27.08984 -25.87208 -24.50293 -23.12799 -21.34121 -21.03099 -20.46897 -20.02025 -18.34408 -16.93947 -16.70066 -16.38985 -15.85133 -15.70929 -15.40848 -14.90656 -14.57463 -14.54013 -14.33934 -14.24779 -13.70384 -13.56553 -13.51174 -13.32617 -13.23056 -12.88875 -12.81717 -12.50347 -12.33356 -12.31832 -11.93920 -11.69998 -11.47793 -11.35273 -11.23136 -11.09803 -11.06128 -10.66688 -10.39603 -9.79761 -9.47275 -9.41764 -9.20510 -8.94925 -8.88474 -8.69257 -8.41658 -6.09999 -4.13665 0.96151 1.02531 1.61806 2.53759 3.29058 3.34678 3.35473 3.39152 3.44259 3.89534 4.17258 4.40388 4.41708 4.43139 4.74840 4.78056 4.91055 4.95011 4.99459 5.04778 5.14076 5.19301 5.23045 5.26819 5.28832 5.41457 5.45826 5.52816 5.60620 5.76158 5.84095 5.92570 6.04580 6.18211 6.19886 6.23782 6.24136 6.32313 6.59946 6.66346 6.69671 7.06021 7.46937 7.58077 7.66882 7.87294 7.93028 8.21482 8.34444 8.91908 9.51171 11.01450 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024634 B = 0.002049 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.360937 B =13663.115375 C =14163.369209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.077 4.077 3 C -0.121 4.121 4 C -0.080 4.080 5 C -0.115 4.115 6 C -0.113 4.113 7 C -0.083 4.083 8 C 0.182 3.818 9 H 0.101 0.899 10 C -0.159 4.159 11 N -0.701 5.701 12 C 0.510 3.490 13 O -0.519 6.519 14 C 0.497 3.503 15 O -0.534 6.534 16 N -0.686 5.686 17 C 0.119 3.881 18 C 0.011 3.989 19 C -0.523 4.523 20 H 0.060 0.940 21 C 0.059 3.941 22 N -0.892 5.892 23 Si 0.898 3.102 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.273 1.273 27 C -0.118 4.118 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.121 0.879 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.124 0.876 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.411 0.589 40 H 0.411 0.589 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.025 0.975 44 H 0.025 0.975 45 H 0.263 0.737 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.819 25.622 -15.132 30.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.077 4.077 3 C -0.139 4.139 4 C -0.080 4.080 5 C -0.171 4.171 6 C -0.131 4.131 7 C -0.084 4.084 8 C 0.078 3.922 9 H 0.118 0.882 10 C -0.217 4.217 11 N -0.356 5.356 12 C 0.291 3.709 13 O -0.394 6.394 14 C 0.277 3.723 15 O -0.412 6.412 16 N -0.336 5.336 17 C -0.003 4.003 18 C -0.027 4.027 19 C -0.562 4.562 20 H 0.078 0.922 21 C -0.143 4.143 22 N -0.530 5.530 23 Si 0.726 3.274 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.197 1.197 27 C -0.136 4.136 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.139 0.861 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.142 0.858 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.249 0.751 40 H 0.246 0.754 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.043 0.957 44 H 0.044 0.956 45 H 0.072 0.928 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.643 25.474 -15.062 30.127 hybrid contribution -0.354 -0.742 0.614 1.026 sum -5.998 24.731 -14.448 29.263 Atomic orbital electron populations 1.20823 0.90951 1.03120 1.02451 1.19884 0.96183 0.92870 0.98754 1.20940 0.93511 0.97584 1.01839 1.19878 0.93810 0.95222 0.99083 1.20799 1.00017 0.93937 1.02392 1.20845 0.99841 0.91088 1.01362 1.19838 0.93870 0.94186 1.00506 1.19874 0.96733 0.84932 0.90669 0.88155 1.22176 1.02784 1.02024 0.94710 1.45931 1.14120 1.28018 1.47496 1.20465 0.87041 0.82296 0.81067 1.90750 1.14942 1.72951 1.60757 1.19967 0.87215 0.82963 0.82203 1.90729 1.14898 1.73846 1.61690 1.46231 1.14209 1.27136 1.46060 1.21939 0.97234 0.89674 0.91456 1.19357 0.93996 0.92493 0.96818 1.21010 0.95849 1.11132 1.28189 0.92167 1.25007 0.94869 0.97789 0.96656 1.69955 1.06992 1.31978 1.44121 0.86495 0.79314 0.81201 0.80424 1.20553 1.21158 1.19730 1.20824 0.93377 0.97876 1.01571 0.91054 0.91164 0.91464 0.86082 0.91086 0.91498 0.91365 0.85755 0.91269 0.92018 0.91177 0.75120 0.75375 0.91860 0.91862 0.95657 0.95650 0.92773 0.85948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 10.01 36.01 0.36 -0.37 16 2 C -0.08 -0.63 5.88 -104.62 -0.62 -1.25 16 3 C -0.12 -0.94 9.36 -39.58 -0.37 -1.32 16 4 C -0.08 -0.63 5.88 -104.63 -0.62 -1.25 16 5 C -0.11 -0.64 10.01 36.00 0.36 -0.28 16 6 C -0.11 -0.97 9.33 -39.58 -0.37 -1.34 16 7 C -0.08 -0.78 4.95 -104.62 -0.52 -1.29 16 8 C 0.18 1.85 2.77 -69.08 -0.19 1.66 16 9 H 0.10 1.09 7.44 -51.93 -0.39 0.71 16 10 C -0.16 -1.45 9.46 37.16 0.35 -1.10 16 11 N -0.70 -8.43 5.02 -55.36 -0.28 -8.71 16 12 C 0.51 7.72 7.85 -11.59 -0.09 7.63 16 13 O -0.52 -8.69 16.14 5.50 0.09 -8.60 16 14 C 0.50 8.65 7.89 -11.59 -0.09 8.56 16 15 O -0.53 -10.17 16.48 5.49 0.09 -10.08 16 16 N -0.69 -12.58 5.55 -60.73 -0.34 -12.92 16 17 C 0.12 2.49 5.61 -4.04 -0.02 2.47 16 18 C 0.01 0.27 5.09 -27.89 -0.14 0.13 16 19 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 20 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 23 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 27 C -0.12 -1.06 8.71 -39.58 -0.34 -1.40 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 30 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 31 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 34 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 35 H 0.12 0.90 8.04 -52.49 -0.42 0.48 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.41 4.63 6.36 -40.82 -0.26 4.37 16 40 H 0.41 7.18 7.94 -40.82 -0.32 6.85 16 41 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 46 H 0.12 1.00 6.93 -52.49 -0.36 0.64 16 LS Contribution 391.15 15.07 5.89 5.89 Total: -1.00 -31.52 391.15 -8.74 -40.26 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -7.20 Total: 5.58 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -2.71 Total: -2.32 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: 0.12 Total: -47.03 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: 0.18 Total: -18.67 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.52 -8.74 -40.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346168298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.487 kcal (2) G-P(sol) polarization free energy of solvation -31.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds