Wall clock time and date at job start Tue Mar 31 2020 12:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38241 * 119.99485 * 2 1 4 4 C 1.38238 * 119.99999 * 179.97438 * 3 2 1 5 5 C 1.50694 * 120.00092 * 180.02562 * 4 3 2 6 6 C 1.38235 * 119.99783 * 359.97438 * 4 3 2 7 7 C 1.38241 * 120.00218 * 0.02562 * 6 4 3 8 8 C 1.50699 * 120.00160 * 179.97438 * 7 6 4 9 9 H 1.09001 * 109.47358 * 19.99633 * 8 7 6 10 10 C 1.53006 * 109.46866 * 260.00038 * 8 7 6 11 11 N 1.46496 * 109.47248 * 140.00274 * 8 7 6 12 12 C 1.34779 * 119.99965 * 205.00258 * 11 8 7 13 13 O 1.21343 * 119.99819 * 359.97438 * 12 11 8 14 14 C 1.49447 * 119.99891 * 180.02562 * 12 11 8 15 15 O 1.21357 * 120.00117 * 359.97438 * 14 12 11 16 16 N 1.34779 * 120.00293 * 179.97438 * 14 12 11 17 17 C 1.46499 * 120.00331 * 179.97438 * 16 14 12 18 18 C 1.53001 * 109.47110 * 179.97438 * 17 16 14 19 19 C 1.50690 * 109.47028 * 180.02562 * 18 17 16 20 20 H 1.08004 * 120.00328 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99920 * 180.02562 * 19 18 17 22 22 N 1.31506 * 120.00205 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00140 * 179.97438 * 21 19 18 24 24 H 1.48510 * 109.46876 * 89.99982 * 23 21 19 25 25 H 1.48499 * 109.47319 * 209.99882 * 23 21 19 26 26 H 1.48497 * 109.47266 * 330.00546 * 23 21 19 27 27 C 1.38231 * 120.00492 * 180.23550 * 2 1 3 28 28 H 1.09002 * 109.47220 * 90.00395 * 1 2 3 29 29 H 1.09003 * 109.46811 * 209.99806 * 1 2 3 30 30 H 1.09001 * 109.47464 * 329.99606 * 1 2 3 31 31 H 1.08003 * 120.00194 * 0.02562 * 3 2 1 32 32 H 1.09003 * 109.47344 * 269.97664 * 5 4 3 33 33 H 1.08998 * 109.47472 * 29.98345 * 5 4 3 34 34 H 1.09004 * 109.46984 * 149.97657 * 5 4 3 35 35 H 1.07995 * 120.00075 * 180.02562 * 6 4 3 36 36 H 1.09001 * 109.47002 * 179.97438 * 10 8 7 37 37 H 1.08993 * 109.46955 * 300.00219 * 10 8 7 38 38 H 1.09000 * 109.47050 * 60.00048 * 10 8 7 39 39 H 0.97003 * 119.99991 * 24.99332 * 11 8 7 40 40 H 0.97001 * 119.99780 * 359.97438 * 16 14 12 41 41 H 1.08999 * 109.47270 * 299.99923 * 17 16 14 42 42 H 1.09007 * 109.46830 * 59.99912 * 17 16 14 43 43 H 1.09001 * 109.47411 * 300.00861 * 18 17 16 44 44 H 1.09005 * 109.46463 * 60.00404 * 18 17 16 45 45 H 0.97000 * 120.00601 * 179.97438 * 22 21 19 46 46 H 1.08002 * 120.00019 * 0.04199 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1973 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.3338 2.5025 0.0011 6 6 4.2717 0.0003 0.0016 7 6 3.5806 -1.1970 0.0016 8 6 4.3342 -2.5020 0.0022 9 1 5.3521 -2.3337 0.3540 10 6 4.3728 -3.0692 -1.4183 11 7 3.6618 -3.4538 0.8899 12 6 4.3596 -4.4617 1.4500 13 8 5.5448 -4.5809 1.2186 14 6 3.6735 -5.4330 2.3551 15 8 2.4881 -5.3140 2.5862 16 7 4.3712 -6.4411 2.9149 17 6 3.6988 -7.3930 3.8026 18 6 4.7091 -8.4295 4.2983 19 6 4.0173 -9.4089 5.2109 20 1 2.9623 -9.3030 5.4165 21 6 4.7311 -10.4403 5.7834 22 7 6.0157 -10.5691 5.5335 23 14 3.8736 -11.6541 6.9153 24 1 3.3498 -12.7910 6.1162 25 1 4.8409 -12.1606 7.9219 26 1 2.7485 -10.9757 7.6074 27 6 2.1983 -1.1970 -0.0049 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6580 2.1326 0.0004 32 1 4.5163 2.8172 -1.0264 33 1 3.7444 3.2621 0.5146 34 1 5.2859 2.3722 0.5157 35 1 5.3517 0.0003 0.0024 36 1 4.9183 -4.0129 -1.4180 37 1 3.3550 -3.2375 -1.7701 38 1 4.8731 -2.3610 -2.0788 39 1 2.7142 -3.3586 1.0746 40 1 5.3187 -6.5365 2.7300 41 1 3.2772 -6.8597 4.6547 42 1 2.9001 -7.8962 3.2576 43 1 5.1305 -8.9627 3.4460 44 1 5.5080 -7.9264 4.8432 45 1 6.5180 -11.2944 5.9365 46 1 1.6583 -2.1324 -0.0095 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346168298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:49 Heat of formation + Delta-G solvation = -91.996244 kcal Electronic energy + Delta-G solvation = -25408.006184 eV Core-core repulsion = 21681.671296 eV Total energy + Delta-G solvation = -3726.334888 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.88500 -40.72892 -39.61323 -37.24765 -36.60799 -34.86069 -34.41912 -33.23497 -31.70701 -30.73461 -28.14414 -27.69140 -27.47439 -25.82868 -24.30405 -22.85013 -22.01038 -21.48463 -21.01491 -19.62142 -18.59283 -17.92787 -17.42380 -17.12808 -16.84434 -16.54527 -16.22416 -16.13470 -15.82407 -15.26459 -15.02467 -14.89368 -14.64087 -14.34778 -14.31007 -13.99595 -13.92190 -13.84424 -13.35564 -13.28025 -13.23683 -12.95083 -12.85188 -12.82102 -12.57179 -12.53060 -12.30493 -12.28815 -11.94775 -11.77325 -11.69258 -11.44450 -10.74256 -10.62060 -10.46527 -10.21864 -9.60349 -9.48543 -8.23713 -6.34953 0.26686 0.33108 0.41150 1.29752 1.43370 1.43563 1.55194 2.08753 2.39245 2.61442 2.77612 3.11131 3.38656 3.45607 3.81056 3.90648 4.14788 4.18856 4.23700 4.37809 4.44216 4.45465 4.48300 4.52532 4.65922 4.70655 4.79738 4.80402 4.82125 4.86311 4.94231 5.06139 5.06663 5.12943 5.16648 5.23277 5.35896 5.41478 5.54216 5.54528 5.60465 5.68467 5.75004 5.89767 6.07764 6.12412 6.31980 6.66483 6.78859 6.89544 7.34500 8.88260 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024634 B = 0.002049 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.360937 B =13663.115375 C =14163.369209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.085 4.085 3 C -0.127 4.127 4 C -0.085 4.085 5 C -0.114 4.114 6 C -0.124 4.124 7 C -0.092 4.092 8 C 0.183 3.817 9 H 0.094 0.906 10 C -0.154 4.154 11 N -0.684 5.684 12 C 0.517 3.483 13 O -0.537 6.537 14 C 0.500 3.500 15 O -0.549 6.549 16 N -0.687 5.687 17 C 0.138 3.862 18 C 0.018 3.982 19 C -0.544 4.544 20 H 0.065 0.935 21 C 0.004 3.996 22 N -0.928 5.928 23 Si 0.968 3.032 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.263 1.263 27 C -0.132 4.132 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.139 0.861 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.133 0.867 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.416 0.584 40 H 0.415 0.585 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.008 0.992 44 H 0.007 0.993 45 H 0.266 0.734 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.008 26.979 -15.461 31.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.085 4.085 3 C -0.145 4.145 4 C -0.085 4.085 5 C -0.170 4.170 6 C -0.143 4.143 7 C -0.093 4.093 8 C 0.080 3.920 9 H 0.112 0.888 10 C -0.212 4.212 11 N -0.338 5.338 12 C 0.298 3.702 13 O -0.414 6.414 14 C 0.280 3.720 15 O -0.427 6.427 16 N -0.339 5.339 17 C 0.015 3.985 18 C -0.019 4.019 19 C -0.583 4.583 20 H 0.083 0.917 21 C -0.195 4.195 22 N -0.567 5.567 23 Si 0.793 3.207 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.188 1.188 27 C -0.150 4.150 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.157 0.843 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.151 0.849 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.255 0.745 40 H 0.251 0.749 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.074 0.926 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.855 26.869 -15.417 31.727 hybrid contribution -0.001 -1.058 0.665 1.249 sum -6.856 25.811 -14.752 30.510 Atomic orbital electron populations 1.20856 0.89687 1.03553 1.03163 1.20160 0.97271 0.92788 0.98306 1.21237 0.93734 0.98247 1.01245 1.20189 0.94168 0.95913 0.98276 1.20841 1.00012 0.92961 1.03212 1.21037 1.00484 0.91184 1.01567 1.19764 0.94045 0.93766 1.01684 1.19990 0.96330 0.85061 0.90665 0.88835 1.22135 1.03145 1.01616 0.94280 1.45945 1.14261 1.27043 1.46586 1.19959 0.86685 0.82563 0.81041 1.90751 1.15509 1.73549 1.61589 1.20319 0.86964 0.82757 0.81918 1.90717 1.15609 1.74202 1.62203 1.46066 1.14429 1.27257 1.46101 1.21492 0.95979 0.89242 0.91793 1.19178 0.94181 0.92876 0.95670 1.21444 0.96329 1.11860 1.28652 0.91691 1.25931 0.95545 0.99770 0.98248 1.70072 1.08496 1.32853 1.45299 0.85396 0.78323 0.78702 0.78313 1.19769 1.20759 1.18769 1.20944 0.93366 0.98473 1.02210 0.90146 0.91342 0.90441 0.84277 0.90093 0.90555 0.91069 0.84886 0.92791 0.91415 0.89465 0.74532 0.74888 0.92037 0.91940 0.97371 0.97415 0.92568 0.85720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 10.01 71.24 0.71 -0.54 16 2 C -0.09 -1.28 5.88 -19.87 -0.12 -1.40 16 3 C -0.13 -1.75 9.36 22.27 0.21 -1.54 16 4 C -0.09 -1.20 5.88 -19.87 -0.12 -1.32 16 5 C -0.11 -1.03 10.01 71.23 0.71 -0.32 16 6 C -0.12 -1.99 9.33 22.27 0.21 -1.78 16 7 C -0.09 -1.62 4.95 -19.86 -0.10 -1.72 16 8 C 0.18 3.59 2.77 44.25 0.12 3.71 16 9 H 0.09 2.00 7.44 -2.39 -0.02 1.98 16 10 C -0.15 -2.67 9.46 71.98 0.68 -1.99 16 11 N -0.68 -16.08 5.02 -447.44 -2.25 -18.32 16 12 C 0.52 15.50 7.85 87.27 0.69 16.18 16 13 O -0.54 -17.94 16.14 -3.23 -0.05 -17.99 16 14 C 0.50 17.29 7.89 87.27 0.69 17.98 16 15 O -0.55 -20.62 16.48 -3.27 -0.05 -20.68 16 16 N -0.69 -25.41 5.55 -464.40 -2.58 -27.98 16 17 C 0.14 5.82 5.61 86.38 0.48 6.30 16 18 C 0.02 0.94 5.09 29.85 0.15 1.09 16 19 C -0.54 -30.16 9.11 25.60 0.23 -29.93 16 20 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 21 C 0.00 0.21 5.46 84.66 0.46 0.67 16 22 N -0.93 -54.96 13.29 21.45 0.28 -54.68 16 23 Si 0.97 43.50 29.54 68.60 2.03 45.52 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 26 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 27 C -0.13 -2.22 8.71 22.27 0.19 -2.03 16 28 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.76 8.09 -2.39 -0.02 0.74 16 30 H 0.08 0.67 8.09 -2.39 -0.02 0.65 16 31 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 32 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.08 0.55 8.09 -2.39 -0.02 0.53 16 34 H 0.07 0.61 8.09 -2.38 -0.02 0.59 16 35 H 0.13 1.79 8.04 -2.91 -0.02 1.76 16 36 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.42 9.08 6.36 -92.71 -0.59 8.49 16 40 H 0.41 14.75 7.94 -92.71 -0.74 14.01 16 41 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.06 2.65 8.14 -2.38 -0.02 2.63 16 43 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.01 0.40 8.14 -2.38 -0.02 0.39 16 45 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 46 H 0.12 1.94 6.93 -2.91 -0.02 1.92 16 Total: -1.00 -66.42 391.15 2.26 -64.15 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: -0.33 Total: 26.59 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 5.21 Total: 3.38 kcal Atomic # 7 Polarization: -96.45 SS G_CDS: -4.54 Total: -100.98 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -0.11 Total: -38.67 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -66.42 2.26 -64.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346168298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.841 kcal (2) G-P(sol) polarization free energy of solvation -66.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds