Wall clock time and date at job start Tue Mar 31 2020 12:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 120.00034 * 2 1 4 4 C 1.38211 * 120.00175 * 180.23734 * 3 2 1 5 5 C 1.38260 * 120.00008 * 359.79887 * 4 3 2 6 6 C 1.38215 * 119.99680 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.99534 * 179.97438 * 6 5 4 8 8 H 1.09005 * 109.46948 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.46882 * 299.96876 * 7 6 5 10 10 C 1.52992 * 109.47407 * 59.97739 * 7 6 5 11 11 N 1.46498 * 109.47032 * 175.00231 * 10 7 6 12 12 C 1.34783 * 119.99877 * 180.02562 * 11 10 7 13 13 O 1.21348 * 120.00249 * 359.97438 * 12 11 10 14 14 C 1.49459 * 119.99612 * 179.97438 * 12 11 10 15 15 O 1.21348 * 120.00138 * 359.97438 * 14 12 11 16 16 N 1.34784 * 119.99314 * 179.97438 * 14 12 11 17 17 C 1.46495 * 119.99297 * 179.97438 * 16 14 12 18 18 C 1.53008 * 109.46668 * 180.02562 * 17 16 14 19 19 C 1.50702 * 109.46754 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00133 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99712 * 180.02562 * 19 18 17 22 22 N 1.31509 * 119.99952 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99674 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47307 * 60.00518 * 23 21 19 25 25 H 1.48505 * 109.46698 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47431 * 299.99911 * 23 21 19 27 27 C 1.38211 * 120.00162 * 179.80188 * 2 1 3 28 28 H 1.09001 * 109.47236 * 270.19071 * 1 2 3 29 29 H 1.09000 * 109.47285 * 30.19264 * 1 2 3 30 30 H 1.08993 * 109.47149 * 150.19759 * 1 2 3 31 31 H 1.08003 * 120.00342 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.00392 * 179.78930 * 4 3 2 33 33 H 1.07996 * 119.99860 * 179.97438 * 5 4 3 34 34 H 1.09006 * 109.46931 * 180.02562 * 9 7 6 35 35 H 1.08991 * 109.47468 * 300.00189 * 9 7 6 36 36 H 1.09005 * 109.46462 * 60.00764 * 9 7 6 37 37 H 1.09002 * 109.47153 * 294.99640 * 10 7 6 38 38 H 1.09001 * 109.47561 * 54.99336 * 10 7 6 39 39 H 0.96996 * 120.00603 * 359.97438 * 11 10 7 40 40 H 0.96997 * 120.00233 * 0.02562 * 16 14 12 41 41 H 1.09000 * 109.47731 * 299.99634 * 17 16 14 42 42 H 1.08995 * 109.47248 * 60.00508 * 17 16 14 43 43 H 1.08992 * 109.46992 * 299.99610 * 18 17 16 44 44 H 1.08995 * 109.46918 * 60.00248 * 18 17 16 45 45 H 0.97006 * 119.99836 * 179.97438 * 22 21 19 46 46 H 1.08002 * 120.00200 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1974 -0.0050 5 6 4.2717 0.0000 -0.0057 6 6 3.5806 -1.1969 -0.0020 7 6 4.3342 -2.5020 -0.0035 8 1 3.6258 -3.3305 0.0004 9 6 5.2087 -2.5845 -1.2562 10 6 5.2187 -2.5816 1.2423 11 7 5.8595 -3.8976 1.3030 12 6 6.6891 -4.1968 2.3222 13 8 6.9056 -3.3760 3.1893 14 6 7.3424 -5.5396 2.3843 15 8 7.1255 -6.3606 1.5174 16 7 8.1724 -5.8386 3.4033 17 6 8.8123 -7.1550 3.4645 18 6 9.6966 -7.2347 4.7106 19 6 10.3553 -8.5887 4.7732 20 1 10.1623 -9.3193 4.0017 21 6 11.2037 -8.8950 5.8161 22 7 11.4384 -8.0054 6.7558 23 14 12.0197 -10.5735 5.8941 24 1 12.8537 -10.7753 4.6821 25 1 12.8780 -10.6508 7.1035 26 1 10.9766 -11.6285 5.9585 27 6 2.1980 -1.1969 0.0041 28 1 -0.3634 0.0034 1.0277 29 1 -0.3634 0.8882 -0.5168 30 1 -0.3633 -0.8917 -0.5107 31 1 1.6583 2.1327 0.0004 32 1 4.1204 2.1327 -0.0084 33 1 5.3516 0.0001 -0.0100 34 1 5.7534 -3.5287 -1.2575 35 1 4.5785 -2.5279 -2.1437 36 1 5.9170 -1.7560 -1.2599 37 1 5.9839 -1.8068 1.1947 38 1 4.6070 -2.4338 2.1324 39 1 5.6862 -4.5539 0.6101 40 1 8.3454 -5.1825 4.0964 41 1 8.0467 -7.9294 3.5126 42 1 9.4238 -7.3035 2.5745 43 1 10.4622 -6.4605 4.6629 44 1 9.0847 -7.0864 5.6003 45 1 12.0349 -8.2210 7.4897 46 1 1.6581 -2.1323 0.0070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346642527.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:00 Heat of formation + Delta-G solvation = -74.018892 kcal Electronic energy + Delta-G solvation = -24951.010186 eV Core-core repulsion = 21225.454855 eV Total energy + Delta-G solvation = -3725.555331 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.54837 -39.94113 -38.33455 -36.63738 -35.13770 -33.72461 -32.84397 -32.51807 -30.09298 -29.80370 -27.37718 -27.23028 -25.42449 -23.90271 -22.61883 -22.47234 -21.02534 -20.40768 -19.83213 -18.22220 -17.12141 -16.71876 -16.32318 -16.11513 -15.77047 -15.30785 -15.12801 -14.81794 -14.75608 -14.47834 -14.16436 -13.92276 -13.85595 -13.50104 -13.42073 -13.17685 -12.88280 -12.63178 -12.53024 -12.31642 -12.28822 -11.73961 -11.58449 -11.50778 -11.24177 -11.17015 -11.10230 -11.04583 -10.68420 -10.38855 -9.79914 -9.45591 -9.34751 -9.22358 -9.13912 -8.93305 -8.69317 -8.41324 -6.09756 -4.13570 0.97364 1.04051 1.62272 2.54069 3.30809 3.35014 3.37412 3.38300 3.43801 3.86952 4.23759 4.31947 4.40957 4.51685 4.58161 4.67950 4.77343 4.78563 4.86983 5.00872 5.10574 5.19951 5.20839 5.26989 5.32613 5.40065 5.46490 5.49913 5.65926 5.70311 5.77194 5.83991 6.09448 6.14934 6.18287 6.22214 6.23979 6.27088 6.59729 6.65757 6.69500 7.05126 7.46860 7.58124 7.67090 7.87279 7.93308 8.21499 8.34311 8.91743 9.51226 11.01627 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.036086 B = 0.001738 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.727380 B =16105.251673 C =16281.789313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.124 4.124 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.070 4.070 7 C -0.064 4.064 8 H 0.088 0.912 9 C -0.148 4.148 10 C 0.126 3.874 11 N -0.705 5.705 12 C 0.507 3.493 13 O -0.519 6.519 14 C 0.497 3.503 15 O -0.534 6.534 16 N -0.686 5.686 17 C 0.119 3.881 18 C 0.011 3.989 19 C -0.524 4.524 20 H 0.060 0.940 21 C 0.060 3.940 22 N -0.892 5.892 23 Si 0.899 3.101 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 C -0.114 4.114 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.412 0.588 40 H 0.411 0.589 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.025 0.975 44 H 0.025 0.975 45 H 0.263 0.737 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.218 18.465 -16.141 31.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.142 4.142 4 C -0.131 4.131 5 C -0.135 4.135 6 C -0.071 4.071 7 C -0.083 4.083 8 H 0.106 0.894 9 C -0.205 4.205 10 C 0.003 3.997 11 N -0.360 5.360 12 C 0.288 3.712 13 O -0.394 6.394 14 C 0.277 3.723 15 O -0.412 6.412 16 N -0.337 5.337 17 C -0.003 4.003 18 C -0.027 4.027 19 C -0.563 4.563 20 H 0.078 0.922 21 C -0.143 4.143 22 N -0.530 5.530 23 Si 0.726 3.274 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.201 1.201 27 C -0.132 4.132 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.249 0.751 40 H 0.246 0.754 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.044 0.956 44 H 0.044 0.956 45 H 0.073 0.927 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -20.090 18.484 -15.941 31.613 hybrid contribution 0.504 -0.789 0.178 0.954 sum -19.585 17.694 -15.763 30.743 Atomic orbital electron populations 1.20800 0.91177 1.02772 1.02450 1.19912 0.96092 0.93121 0.99457 1.21050 0.94333 0.97504 1.01302 1.21138 0.94280 0.98046 0.99680 1.21032 1.00051 0.91923 1.00526 1.19606 0.93443 0.94154 0.99884 1.20375 0.97097 0.95618 0.95175 0.89381 1.21904 0.99479 1.02663 0.96438 1.21500 0.95981 0.84374 0.97876 1.45752 1.46291 1.17106 1.26838 1.20456 0.80036 0.88540 0.82143 1.90762 1.61070 1.49710 1.37904 1.19978 0.81367 0.87449 0.83532 1.90725 1.62354 1.49593 1.38574 1.46236 1.43750 1.18799 1.24884 1.21936 0.96035 0.80504 1.01829 1.19357 0.94166 0.98270 0.90883 1.20975 1.27331 0.98948 1.09059 0.92214 1.25001 0.96447 0.97353 0.95450 1.69949 1.36614 1.34414 1.12057 0.86551 0.79375 0.84002 0.77462 1.20112 1.21230 1.20111 1.20954 0.93342 0.97724 1.01174 0.91082 0.91569 0.91503 0.86209 0.85977 0.85921 0.91772 0.91977 0.92003 0.90715 0.90776 0.75114 0.75372 0.91865 0.91852 0.95649 0.95649 0.92718 0.86006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.59 10.01 36.00 0.36 -0.23 16 2 C -0.09 -0.62 5.88 -104.63 -0.62 -1.23 16 3 C -0.12 -0.88 9.70 -39.58 -0.38 -1.26 16 4 C -0.11 -0.82 10.05 -39.58 -0.40 -1.22 16 5 C -0.12 -0.90 8.76 -39.58 -0.35 -1.25 16 6 C -0.07 -0.54 4.78 -104.62 -0.50 -1.04 16 7 C -0.06 -0.46 2.60 -91.77 -0.24 -0.70 16 8 H 0.09 0.57 7.88 -51.93 -0.41 0.16 16 9 C -0.15 -0.99 8.88 37.16 0.33 -0.66 16 10 C 0.13 1.19 4.80 -4.05 -0.02 1.17 16 11 N -0.71 -7.95 5.28 -60.73 -0.32 -8.27 16 12 C 0.51 7.59 7.89 -11.58 -0.09 7.50 16 13 O -0.52 -8.86 16.48 5.50 0.09 -8.77 16 14 C 0.50 8.55 7.89 -11.58 -0.09 8.46 16 15 O -0.53 -10.03 16.48 5.50 0.09 -9.94 16 16 N -0.69 -12.56 5.55 -60.73 -0.34 -12.89 16 17 C 0.12 2.48 5.61 -4.04 -0.02 2.46 16 18 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 19 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 20 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16 23 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 C -0.11 -0.86 9.33 -39.58 -0.37 -1.23 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 30 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 31 H 0.12 0.64 8.06 -52.48 -0.42 0.21 16 32 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.12 0.84 7.16 -52.49 -0.38 0.46 16 34 H 0.06 0.44 7.18 -51.93 -0.37 0.06 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.41 7.39 -51.93 -0.38 0.03 16 37 H 0.07 0.73 7.57 -51.93 -0.39 0.33 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.41 4.14 7.13 -40.82 -0.29 3.85 16 40 H 0.41 7.19 7.94 -40.82 -0.32 6.87 16 41 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.12 0.76 7.95 -52.49 -0.42 0.34 16 LS Contribution 389.30 15.07 5.87 5.87 Total: -1.00 -31.80 389.30 -8.99 -40.79 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -7.15 Total: 4.62 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -2.94 Total: -2.28 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: 0.08 Total: -46.53 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: 0.18 Total: -18.71 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.80 -8.99 -40.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346642527.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.228 kcal (2) G-P(sol) polarization free energy of solvation -31.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds