Wall clock time and date at job start Tue Mar 31 2020 12:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 120.00034 * 2 1 4 4 C 1.38211 * 120.00175 * 180.23734 * 3 2 1 5 5 C 1.38260 * 120.00008 * 359.79887 * 4 3 2 6 6 C 1.38215 * 119.99680 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.99534 * 179.97438 * 6 5 4 8 8 H 1.09005 * 109.46948 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.46882 * 299.96876 * 7 6 5 10 10 C 1.52992 * 109.47407 * 59.97739 * 7 6 5 11 11 N 1.46498 * 109.47032 * 175.00231 * 10 7 6 12 12 C 1.34783 * 119.99877 * 180.02562 * 11 10 7 13 13 O 1.21348 * 120.00249 * 359.97438 * 12 11 10 14 14 C 1.49459 * 119.99612 * 179.97438 * 12 11 10 15 15 O 1.21348 * 120.00138 * 359.97438 * 14 12 11 16 16 N 1.34784 * 119.99314 * 179.97438 * 14 12 11 17 17 C 1.46495 * 119.99297 * 179.97438 * 16 14 12 18 18 C 1.53008 * 109.46668 * 180.02562 * 17 16 14 19 19 C 1.50702 * 109.46754 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00133 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99712 * 180.02562 * 19 18 17 22 22 N 1.31509 * 119.99952 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99674 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47307 * 60.00518 * 23 21 19 25 25 H 1.48505 * 109.46698 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47431 * 299.99911 * 23 21 19 27 27 C 1.38211 * 120.00162 * 179.80188 * 2 1 3 28 28 H 1.09001 * 109.47236 * 270.19071 * 1 2 3 29 29 H 1.09000 * 109.47285 * 30.19264 * 1 2 3 30 30 H 1.08993 * 109.47149 * 150.19759 * 1 2 3 31 31 H 1.08003 * 120.00342 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.00392 * 179.78930 * 4 3 2 33 33 H 1.07996 * 119.99860 * 179.97438 * 5 4 3 34 34 H 1.09006 * 109.46931 * 180.02562 * 9 7 6 35 35 H 1.08991 * 109.47468 * 300.00189 * 9 7 6 36 36 H 1.09005 * 109.46462 * 60.00764 * 9 7 6 37 37 H 1.09002 * 109.47153 * 294.99640 * 10 7 6 38 38 H 1.09001 * 109.47561 * 54.99336 * 10 7 6 39 39 H 0.96996 * 120.00603 * 359.97438 * 11 10 7 40 40 H 0.96997 * 120.00233 * 0.02562 * 16 14 12 41 41 H 1.09000 * 109.47731 * 299.99634 * 17 16 14 42 42 H 1.08995 * 109.47248 * 60.00508 * 17 16 14 43 43 H 1.08992 * 109.46992 * 299.99610 * 18 17 16 44 44 H 1.08995 * 109.46918 * 60.00248 * 18 17 16 45 45 H 0.97006 * 119.99836 * 179.97438 * 22 21 19 46 46 H 1.08002 * 120.00200 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1974 -0.0050 5 6 4.2717 0.0000 -0.0057 6 6 3.5806 -1.1969 -0.0020 7 6 4.3342 -2.5020 -0.0035 8 1 3.6258 -3.3305 0.0004 9 6 5.2087 -2.5845 -1.2562 10 6 5.2187 -2.5816 1.2423 11 7 5.8595 -3.8976 1.3030 12 6 6.6891 -4.1968 2.3222 13 8 6.9056 -3.3760 3.1893 14 6 7.3424 -5.5396 2.3843 15 8 7.1255 -6.3606 1.5174 16 7 8.1724 -5.8386 3.4033 17 6 8.8123 -7.1550 3.4645 18 6 9.6966 -7.2347 4.7106 19 6 10.3553 -8.5887 4.7732 20 1 10.1623 -9.3193 4.0017 21 6 11.2037 -8.8950 5.8161 22 7 11.4384 -8.0054 6.7558 23 14 12.0197 -10.5735 5.8941 24 1 12.8537 -10.7753 4.6821 25 1 12.8780 -10.6508 7.1035 26 1 10.9766 -11.6285 5.9585 27 6 2.1980 -1.1969 0.0041 28 1 -0.3634 0.0034 1.0277 29 1 -0.3634 0.8882 -0.5168 30 1 -0.3633 -0.8917 -0.5107 31 1 1.6583 2.1327 0.0004 32 1 4.1204 2.1327 -0.0084 33 1 5.3516 0.0001 -0.0100 34 1 5.7534 -3.5287 -1.2575 35 1 4.5785 -2.5279 -2.1437 36 1 5.9170 -1.7560 -1.2599 37 1 5.9839 -1.8068 1.1947 38 1 4.6070 -2.4338 2.1324 39 1 5.6862 -4.5539 0.6101 40 1 8.3454 -5.1825 4.0964 41 1 8.0467 -7.9294 3.5126 42 1 9.4238 -7.3035 2.5745 43 1 10.4622 -6.4605 4.6629 44 1 9.0847 -7.0864 5.6003 45 1 12.0349 -8.2210 7.4897 46 1 1.6581 -2.1323 0.0070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346642527.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:58 Heat of formation + Delta-G solvation = -93.688090 kcal Electronic energy + Delta-G solvation = -24951.863106 eV Core-core repulsion = 21225.454855 eV Total energy + Delta-G solvation = -3726.408251 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.75200 -40.61038 -39.62719 -37.50706 -36.73212 -34.95564 -34.44674 -33.07366 -31.69454 -30.66680 -28.34456 -27.69474 -27.04281 -25.11007 -23.62614 -23.00624 -22.75495 -21.54720 -20.67573 -19.43694 -18.58165 -17.96038 -17.43070 -17.20416 -16.78759 -16.51952 -16.39284 -16.04568 -15.88349 -15.67946 -15.07453 -14.96653 -14.60880 -14.41532 -14.38781 -14.29413 -13.91744 -13.81251 -13.26539 -13.19099 -13.01249 -12.92443 -12.87778 -12.76121 -12.54275 -12.33111 -12.26913 -12.15527 -11.72937 -11.67863 -11.65483 -11.45431 -10.72271 -10.60692 -10.36790 -10.19767 -9.69628 -9.47225 -8.22888 -6.34309 0.31125 0.42368 0.50278 1.31356 1.44117 1.46051 1.54223 2.11180 2.40264 2.66727 2.84708 3.11989 3.41727 3.64330 3.73533 3.95624 4.05553 4.12324 4.28534 4.32875 4.38714 4.45354 4.52842 4.58788 4.62312 4.67365 4.80916 4.81373 4.84376 4.94094 4.97911 5.05322 5.07660 5.12235 5.21198 5.29587 5.34027 5.42277 5.54945 5.60662 5.69401 5.73183 5.75393 5.91406 6.13040 6.14512 6.35087 6.69619 6.79693 6.91864 7.35202 8.88831 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.036086 B = 0.001738 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.727380 B =16105.251673 C =16281.789313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.096 4.096 3 C -0.133 4.133 4 C -0.123 4.123 5 C -0.131 4.131 6 C -0.079 4.079 7 C -0.053 4.053 8 H 0.098 0.902 9 C -0.146 4.146 10 C 0.127 3.873 11 N -0.684 5.684 12 C 0.514 3.486 13 O -0.543 6.543 14 C 0.501 3.499 15 O -0.548 6.548 16 N -0.689 5.689 17 C 0.138 3.862 18 C 0.018 3.982 19 C -0.546 4.546 20 H 0.065 0.935 21 C 0.005 3.995 22 N -0.928 5.928 23 Si 0.968 3.032 24 H -0.267 1.267 25 H -0.283 1.283 26 H -0.267 1.267 27 C -0.126 4.126 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.127 0.873 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.421 0.579 40 H 0.414 0.586 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.008 0.992 44 H 0.007 0.993 45 H 0.265 0.735 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.189 18.306 -17.369 32.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.096 4.096 3 C -0.151 4.151 4 C -0.141 4.141 5 C -0.149 4.149 6 C -0.079 4.079 7 C -0.072 4.072 8 H 0.117 0.883 9 C -0.203 4.203 10 C 0.004 3.996 11 N -0.338 5.338 12 C 0.294 3.706 13 O -0.420 6.420 14 C 0.281 3.719 15 O -0.427 6.427 16 N -0.340 5.340 17 C 0.015 3.985 18 C -0.020 4.020 19 C -0.585 4.585 20 H 0.084 0.916 21 C -0.194 4.194 22 N -0.567 5.567 23 Si 0.793 3.207 24 H -0.192 1.192 25 H -0.209 1.209 26 H -0.192 1.192 27 C -0.144 4.144 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.145 0.855 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.259 0.741 40 H 0.250 0.750 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.074 0.926 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -21.096 18.336 -17.214 32.827 hybrid contribution 0.737 -0.657 0.515 1.113 sum -20.359 17.679 -16.699 31.716 Atomic orbital electron populations 1.20831 0.89818 1.03561 1.02878 1.20222 0.97277 0.93090 0.99000 1.21331 0.94504 0.98285 1.01015 1.21392 0.94678 0.98564 0.99457 1.21198 1.00449 0.92274 1.00956 1.19670 0.93701 0.94199 1.00343 1.20294 0.96821 0.95964 0.94111 0.88332 1.21897 0.99473 1.02568 0.96403 1.21630 0.96058 0.82996 0.98900 1.45712 1.44556 1.17968 1.25551 1.19972 0.80590 0.87212 0.82846 1.90764 1.62264 1.49925 1.39064 1.20318 0.80669 0.88266 0.82617 1.90715 1.62684 1.50348 1.38907 1.46080 1.44253 1.17980 1.25697 1.21484 0.95416 0.81882 0.99705 1.19185 0.93924 0.96900 0.91986 1.21427 1.27625 1.00088 1.09318 0.91644 1.25923 0.97077 1.01365 0.95024 1.70073 1.37387 1.36526 1.12726 0.85450 0.78447 0.79151 0.77694 1.19184 1.20884 1.19188 1.21176 0.93436 0.98469 1.01287 0.90748 0.90659 0.90893 0.84689 0.84630 0.85531 0.91826 0.91279 0.92094 0.90785 0.91369 0.74117 0.74952 0.91967 0.91933 0.97410 0.97426 0.92590 0.84956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 71.23 0.71 -0.27 16 2 C -0.10 -1.26 5.88 -19.87 -0.12 -1.37 16 3 C -0.13 -1.73 9.70 22.27 0.22 -1.51 16 4 C -0.12 -1.66 10.05 22.27 0.22 -1.44 16 5 C -0.13 -1.90 8.76 22.27 0.20 -1.71 16 6 C -0.08 -1.12 4.78 -19.86 -0.09 -1.22 16 7 C -0.05 -0.69 2.60 -11.54 -0.03 -0.72 16 8 H 0.10 1.08 7.88 -2.38 -0.02 1.06 16 9 C -0.15 -1.72 8.88 71.98 0.64 -1.08 16 10 C 0.13 2.24 4.80 86.38 0.41 2.65 16 11 N -0.68 -14.51 5.28 -464.41 -2.45 -16.96 16 12 C 0.51 14.95 7.89 87.27 0.69 15.64 16 13 O -0.54 -18.28 16.48 -3.24 -0.05 -18.33 16 14 C 0.50 16.89 7.89 87.27 0.69 17.58 16 15 O -0.55 -19.98 16.48 -3.24 -0.05 -20.03 16 16 N -0.69 -25.21 5.55 -464.40 -2.58 -27.79 16 17 C 0.14 5.78 5.61 86.38 0.48 6.26 16 18 C 0.02 0.89 5.09 29.85 0.15 1.04 16 19 C -0.55 -30.16 9.11 25.60 0.23 -29.93 16 20 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 21 C 0.00 0.27 5.46 84.66 0.46 0.74 16 22 N -0.93 -54.88 13.29 21.45 0.28 -54.59 16 23 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 27 C -0.13 -1.73 9.33 22.27 0.21 -1.53 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.50 8.09 -2.39 -0.02 0.48 16 30 H 0.07 0.53 8.08 -2.39 -0.02 0.51 16 31 H 0.14 1.23 8.06 -2.91 -0.02 1.20 16 32 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 33 H 0.13 1.64 7.16 -2.91 -0.02 1.62 16 34 H 0.06 0.76 7.18 -2.38 -0.02 0.74 16 35 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 0.73 7.39 -2.38 -0.02 0.72 16 37 H 0.07 1.37 7.57 -2.39 -0.02 1.35 16 38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.42 7.70 7.13 -92.71 -0.66 7.04 16 40 H 0.41 14.68 7.94 -92.71 -0.74 13.94 16 41 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 43 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.27 14.81 8.31 -92.70 -0.77 14.04 16 46 H 0.13 1.44 7.95 -2.91 -0.02 1.42 16 Total: -1.00 -66.92 389.30 1.85 -65.08 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: -0.41 Total: 24.14 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 5.08 Total: 3.14 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -4.74 Total: -99.35 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -0.11 Total: -38.36 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -66.92 1.85 -65.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346642527.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.613 kcal (2) G-P(sol) polarization free energy of solvation -66.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds