Wall clock time and date at job start Tue Mar 31 2020 13:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38259 * 120.00123 * 2 1 4 4 C 1.38209 * 119.99865 * 180.27962 * 3 2 1 5 5 C 1.38257 * 120.00180 * 359.74609 * 4 3 2 6 6 C 1.38213 * 119.99958 * 359.97262 * 5 4 3 7 7 C 1.38211 * 120.00092 * 179.74757 * 2 1 3 8 8 C 1.50704 * 119.99782 * 0.02562 * 7 2 1 9 9 H 1.08998 * 109.47522 * 43.60429 * 8 7 2 10 10 C 1.50705 * 109.47156 * 163.61033 * 8 7 2 11 11 O 1.20825 * 120.00080 * 120.00023 * 10 8 7 12 12 O 1.34230 * 119.99576 * 299.99473 * 10 8 7 13 13 N 1.46908 * 109.46675 * 283.60459 * 8 7 2 14 14 C 1.46951 * 111.00115 * 300.92216 * 13 8 7 15 15 C 1.53053 * 109.36559 * 176.81302 * 14 13 8 16 16 N 1.46955 * 109.36398 * 58.39899 * 15 14 13 17 17 C 1.46897 * 111.00129 * 176.81391 * 16 15 14 18 18 C 1.50701 * 109.47201 * 59.30357 * 17 16 15 19 19 H 1.08000 * 119.99745 * 355.35612 * 18 17 16 20 20 C 1.37874 * 120.00174 * 175.34974 * 18 17 16 21 21 N 1.31517 * 119.99935 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00204 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47325 * 89.99426 * 22 20 18 24 24 H 1.48497 * 109.47234 * 209.99986 * 22 20 18 25 25 H 1.48501 * 109.46881 * 329.99661 * 22 20 18 26 26 C 1.46952 * 110.88175 * 300.68558 * 16 15 14 27 27 C 1.46955 * 110.99480 * 177.12304 * 13 8 7 28 28 H 1.09003 * 109.47262 * 270.25577 * 1 2 3 29 29 H 1.09004 * 109.47351 * 30.25413 * 1 2 3 30 30 H 1.08997 * 109.47544 * 150.25224 * 1 2 3 31 31 H 1.08003 * 120.00042 * 0.04179 * 3 2 1 32 32 H 1.08005 * 119.99951 * 179.76730 * 4 3 2 33 33 H 1.08004 * 120.00066 * 180.02562 * 5 4 3 34 34 H 1.07997 * 120.00056 * 179.97438 * 6 5 4 35 35 H 0.96707 * 116.99575 * 180.02562 * 12 10 8 36 36 H 1.08998 * 109.49224 * 296.78334 * 14 13 8 37 37 H 1.08998 * 109.48934 * 56.84805 * 14 13 8 38 38 H 1.09003 * 109.48449 * 298.43990 * 15 14 13 39 39 H 1.08991 * 109.49162 * 178.37488 * 15 14 13 40 40 H 1.08998 * 109.47434 * 179.30733 * 17 16 15 41 41 H 1.09003 * 109.47380 * 299.30963 * 17 16 15 42 42 H 0.96998 * 119.99774 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.48894 * 299.34700 * 26 16 15 44 44 H 1.09007 * 109.48710 * 179.28979 * 26 16 15 45 45 H 1.09000 * 109.49545 * 303.15339 * 27 13 8 46 46 H 1.08996 * 109.49103 * 63.20378 * 27 13 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0058 5 6 4.2717 -0.0001 -0.0064 6 6 3.5806 -1.1970 -0.0005 7 6 2.1981 -1.1969 0.0053 8 6 1.4445 -2.5020 0.0104 9 1 0.6187 -2.4476 -0.6988 10 6 2.3740 -3.6203 -0.3854 11 8 2.5761 -4.5362 0.3763 12 8 2.9771 -3.5989 -1.5844 13 7 0.9170 -2.7575 1.3576 14 6 2.0028 -2.8156 2.3460 15 6 1.4075 -3.0033 3.7435 16 7 0.6076 -4.2358 3.7708 17 6 0.0801 -4.4913 5.1178 18 6 -0.7796 -3.3311 5.5490 19 1 -0.8598 -2.4559 4.9213 20 6 -1.4637 -3.3870 6.7448 21 7 -2.2143 -2.3747 7.1208 22 14 -1.3244 -4.9005 7.8307 23 1 -0.1895 -4.7308 8.7733 24 1 -2.5833 -5.0765 8.5983 25 1 -1.0896 -6.0975 6.9838 26 6 -0.4781 -4.1777 2.7823 27 6 0.1172 -3.9900 1.3848 28 1 -0.3634 0.0046 1.0277 29 1 -0.3634 0.8877 -0.5178 30 1 -0.3634 -0.8922 -0.5099 31 1 1.6583 2.1327 0.0007 32 1 4.1204 2.1326 -0.0096 33 1 5.3517 -0.0001 -0.0105 34 1 4.1205 -2.1323 -0.0013 35 1 3.5642 -4.3384 -1.7937 36 1 2.6603 -3.6539 2.1152 37 1 2.5727 -1.8870 2.3153 38 1 0.7715 -2.1517 3.9851 39 1 2.2123 -3.0757 4.4749 40 1 -0.5180 -5.4025 5.1071 41 1 0.9087 -4.6088 5.8163 42 1 -2.6953 -2.4138 7.9622 43 1 -1.1355 -3.3395 3.0131 44 1 -1.0481 -5.1064 2.8131 45 1 -0.6877 -3.9176 0.6534 46 1 0.7531 -4.8416 1.1428 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600566695.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:11 Heat of formation + Delta-G solvation = -37.454251 kcal Electronic energy + Delta-G solvation = -28102.107648 eV Core-core repulsion = 24378.137879 eV Total energy + Delta-G solvation = -3723.969769 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.26324 -39.25990 -38.33208 -36.28716 -35.19302 -32.96224 -32.43404 -31.58318 -30.29335 -28.81371 -27.16729 -26.40941 -24.32667 -23.15148 -22.98791 -21.36970 -21.30865 -20.35347 -19.15461 -18.18301 -17.07953 -16.87283 -16.48790 -15.93840 -15.41922 -15.33981 -14.87164 -14.45408 -14.20298 -14.11500 -14.06711 -13.67784 -13.48048 -13.15915 -12.77968 -12.60707 -12.40274 -12.31914 -12.11468 -12.04596 -11.86488 -11.75912 -11.25614 -11.20943 -10.99183 -10.89408 -10.84132 -10.50966 -10.31791 -10.19821 -10.11387 -9.80098 -9.43548 -8.91517 -8.66751 -8.56201 -8.12900 -7.10633 -6.06839 -4.06165 1.21703 1.32543 2.03890 2.91865 3.30206 3.37574 3.41758 3.58319 4.07418 4.42777 4.45316 4.76841 4.83000 4.93937 5.00051 5.01799 5.10368 5.26491 5.28471 5.36892 5.50224 5.60781 5.70658 5.75531 5.82218 5.84311 5.90750 5.99254 6.11032 6.15203 6.25054 6.29522 6.35496 6.41448 6.46744 6.56060 6.60630 6.81141 6.85778 6.90719 6.96775 7.09315 7.14348 7.24521 7.60519 7.79042 8.11651 8.16529 8.49284 8.97138 9.56360 11.06006 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016689 B = 0.003916 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.348161 B = 7148.410627 C = 7937.877932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.048 4.048 3 C -0.123 4.123 4 C -0.112 4.112 5 C -0.127 4.127 6 C -0.101 4.101 7 C -0.074 4.074 8 C 0.135 3.865 9 H 0.125 0.875 10 C 0.447 3.553 11 O -0.495 6.495 12 O -0.518 6.518 13 N -0.491 5.491 14 C 0.040 3.960 15 C 0.068 3.932 16 N -0.533 5.533 17 C 0.152 3.848 18 C -0.548 4.548 19 H 0.077 0.923 20 C 0.072 3.928 21 N -0.900 5.900 22 Si 0.877 3.123 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.264 1.264 26 C 0.068 3.932 27 C 0.039 3.961 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.402 0.598 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.029 0.971 41 H 0.023 0.977 42 H 0.262 0.738 43 H 0.053 0.947 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.329 3.723 -19.370 22.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.049 4.049 3 C -0.141 4.141 4 C -0.130 4.130 5 C -0.145 4.145 6 C -0.120 4.120 7 C -0.075 4.075 8 C 0.024 3.976 9 H 0.143 0.857 10 C 0.287 3.713 11 O -0.382 6.382 12 O -0.329 6.329 13 N -0.215 5.215 14 C -0.088 4.088 15 C -0.061 4.061 16 N -0.257 5.257 17 C 0.025 3.975 18 C -0.587 4.587 19 H 0.095 0.905 20 C -0.130 4.130 21 N -0.538 5.538 22 Si 0.704 3.296 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.188 1.188 26 C -0.061 4.061 27 C -0.088 4.088 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.131 0.869 35 H 0.260 0.740 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.047 0.953 41 H 0.041 0.959 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.983 3.827 -18.896 21.711 hybrid contribution 0.430 -1.206 0.666 1.443 sum 10.413 2.622 -18.230 21.158 Atomic orbital electron populations 1.20832 0.90501 1.02074 1.03636 1.19679 0.96492 0.91796 0.96922 1.21030 0.94200 0.97469 1.01357 1.21136 0.94366 0.97929 0.99543 1.21004 0.99732 0.92262 1.01547 1.20960 0.93273 0.98143 0.99610 1.19045 0.92976 0.92615 1.02820 1.20640 0.94359 0.88377 0.94240 0.85731 1.25330 0.79353 0.87855 0.78742 1.90732 1.60158 1.36275 1.51060 1.84672 1.58945 1.51882 1.37419 1.62776 1.21664 1.36521 1.00543 1.22570 0.92853 1.01157 0.92190 1.21899 0.97284 0.93292 0.93644 1.62582 1.22094 1.33723 1.07313 1.20187 0.94698 0.96811 0.85770 1.21721 1.27753 1.03318 1.05861 0.90467 1.24962 0.94589 0.95928 0.97540 1.69933 1.30362 1.30911 1.22612 0.86826 0.77542 0.84259 0.80938 1.20262 1.21380 1.18837 1.21878 0.93525 1.01294 0.89400 1.22559 0.96565 0.90787 0.98904 0.89687 0.92004 0.91459 0.85825 0.86104 0.86159 0.86932 0.73999 0.91641 0.91322 0.92883 0.91466 0.95255 0.95851 0.92776 0.92876 0.91357 0.91416 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 9.56 36.00 0.34 -0.87 16 2 C -0.05 -0.56 5.88 -104.63 -0.62 -1.18 16 3 C -0.12 -1.29 9.70 -39.58 -0.38 -1.68 16 4 C -0.11 -1.10 10.05 -39.58 -0.40 -1.50 16 5 C -0.13 -1.32 10.05 -39.58 -0.40 -1.72 16 6 C -0.10 -1.18 8.08 -39.58 -0.32 -1.50 16 7 C -0.07 -0.91 4.03 -104.62 -0.42 -1.33 16 8 C 0.13 1.70 1.85 -70.01 -0.13 1.57 16 9 H 0.13 1.37 6.60 -51.93 -0.34 1.03 16 10 C 0.45 5.65 5.42 36.01 0.20 5.84 16 11 O -0.50 -7.76 12.33 -18.75 -0.23 -7.99 16 12 O -0.52 -4.99 12.56 -39.26 -0.49 -5.48 16 13 N -0.49 -7.58 4.66 -229.27 -1.07 -8.64 16 14 C 0.04 0.68 4.89 -3.77 -0.02 0.66 16 15 C 0.07 1.38 5.24 -3.77 -0.02 1.36 16 16 N -0.53 -11.57 4.92 -235.91 -1.16 -12.73 16 17 C 0.15 3.74 4.23 -4.98 -0.02 3.72 16 18 C -0.55 -15.33 8.23 -34.44 -0.28 -15.61 16 19 H 0.08 2.35 6.06 -52.49 -0.32 2.03 16 20 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 21 N -0.90 -27.49 13.96 55.43 0.77 -26.71 16 22 Si 0.88 21.63 27.56 -169.99 -4.69 16.95 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 25 H -0.26 -6.29 6.41 56.52 0.36 -5.93 16 26 C 0.07 1.34 5.32 -3.77 -0.02 1.32 16 27 C 0.04 0.64 5.25 -3.77 -0.02 0.62 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 30 H 0.07 0.68 6.20 -51.93 -0.32 0.35 16 31 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 32 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 33 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 34 H 0.11 1.30 6.36 -52.49 -0.33 0.96 16 35 H 0.40 2.26 9.10 45.56 0.41 2.68 16 36 H 0.07 1.19 5.52 -51.93 -0.29 0.91 16 37 H 0.07 1.13 6.46 -51.93 -0.34 0.79 16 38 H 0.05 1.22 6.46 -51.93 -0.34 0.88 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.03 0.73 6.85 -51.93 -0.36 0.38 16 41 H 0.02 0.58 7.80 -51.93 -0.41 0.18 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.05 1.18 6.95 -51.93 -0.36 0.82 16 44 H 0.07 1.32 8.13 -51.92 -0.42 0.90 16 45 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.06 1.11 5.68 -51.93 -0.30 0.82 16 LS Contribution 353.00 15.07 5.32 5.32 Total: -1.00 -32.71 353.00 -9.98 -42.69 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.83 Total: 4.93 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -2.61 Total: -8.32 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -1.45 Total: -48.09 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -0.72 Total: -13.47 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.69 Total: 16.95 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.71 -9.98 -42.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600566695.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.233 kcal (2) G-P(sol) polarization free energy of solvation -32.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds