Wall clock time and date at job start Tue Mar 31 2020 13:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38259 * 120.00123 * 2 1 4 4 C 1.38209 * 119.99865 * 180.27962 * 3 2 1 5 5 C 1.38257 * 120.00180 * 359.74609 * 4 3 2 6 6 C 1.38213 * 119.99958 * 359.97262 * 5 4 3 7 7 C 1.38211 * 120.00092 * 179.74757 * 2 1 3 8 8 C 1.50704 * 119.99782 * 0.02562 * 7 2 1 9 9 H 1.08998 * 109.47522 * 43.60429 * 8 7 2 10 10 C 1.50705 * 109.47156 * 163.61033 * 8 7 2 11 11 O 1.20825 * 120.00080 * 120.00023 * 10 8 7 12 12 O 1.34230 * 119.99576 * 299.99473 * 10 8 7 13 13 N 1.46908 * 109.46675 * 283.60459 * 8 7 2 14 14 C 1.46951 * 111.00115 * 300.92216 * 13 8 7 15 15 C 1.53053 * 109.36559 * 176.81302 * 14 13 8 16 16 N 1.46955 * 109.36398 * 58.39899 * 15 14 13 17 17 C 1.46897 * 111.00129 * 176.81391 * 16 15 14 18 18 C 1.50701 * 109.47201 * 59.30357 * 17 16 15 19 19 H 1.08000 * 119.99745 * 355.35612 * 18 17 16 20 20 C 1.37874 * 120.00174 * 175.34974 * 18 17 16 21 21 N 1.31517 * 119.99935 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00204 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47325 * 89.99426 * 22 20 18 24 24 H 1.48497 * 109.47234 * 209.99986 * 22 20 18 25 25 H 1.48501 * 109.46881 * 329.99661 * 22 20 18 26 26 C 1.46952 * 110.88175 * 300.68558 * 16 15 14 27 27 C 1.46955 * 110.99480 * 177.12304 * 13 8 7 28 28 H 1.09003 * 109.47262 * 270.25577 * 1 2 3 29 29 H 1.09004 * 109.47351 * 30.25413 * 1 2 3 30 30 H 1.08997 * 109.47544 * 150.25224 * 1 2 3 31 31 H 1.08003 * 120.00042 * 0.04179 * 3 2 1 32 32 H 1.08005 * 119.99951 * 179.76730 * 4 3 2 33 33 H 1.08004 * 120.00066 * 180.02562 * 5 4 3 34 34 H 1.07997 * 120.00056 * 179.97438 * 6 5 4 35 35 H 0.96707 * 116.99575 * 180.02562 * 12 10 8 36 36 H 1.08998 * 109.49224 * 296.78334 * 14 13 8 37 37 H 1.08998 * 109.48934 * 56.84805 * 14 13 8 38 38 H 1.09003 * 109.48449 * 298.43990 * 15 14 13 39 39 H 1.08991 * 109.49162 * 178.37488 * 15 14 13 40 40 H 1.08998 * 109.47434 * 179.30733 * 17 16 15 41 41 H 1.09003 * 109.47380 * 299.30963 * 17 16 15 42 42 H 0.96998 * 119.99774 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.48894 * 299.34700 * 26 16 15 44 44 H 1.09007 * 109.48710 * 179.28979 * 26 16 15 45 45 H 1.09000 * 109.49545 * 303.15339 * 27 13 8 46 46 H 1.08996 * 109.49103 * 63.20378 * 27 13 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0058 5 6 4.2717 -0.0001 -0.0064 6 6 3.5806 -1.1970 -0.0005 7 6 2.1981 -1.1969 0.0053 8 6 1.4445 -2.5020 0.0104 9 1 0.6187 -2.4476 -0.6988 10 6 2.3740 -3.6203 -0.3854 11 8 2.5761 -4.5362 0.3763 12 8 2.9771 -3.5989 -1.5844 13 7 0.9170 -2.7575 1.3576 14 6 2.0028 -2.8156 2.3460 15 6 1.4075 -3.0033 3.7435 16 7 0.6076 -4.2358 3.7708 17 6 0.0801 -4.4913 5.1178 18 6 -0.7796 -3.3311 5.5490 19 1 -0.8598 -2.4559 4.9213 20 6 -1.4637 -3.3870 6.7448 21 7 -2.2143 -2.3747 7.1208 22 14 -1.3244 -4.9005 7.8307 23 1 -0.1895 -4.7308 8.7733 24 1 -2.5833 -5.0765 8.5983 25 1 -1.0896 -6.0975 6.9838 26 6 -0.4781 -4.1777 2.7823 27 6 0.1172 -3.9900 1.3848 28 1 -0.3634 0.0046 1.0277 29 1 -0.3634 0.8877 -0.5178 30 1 -0.3634 -0.8922 -0.5099 31 1 1.6583 2.1327 0.0007 32 1 4.1204 2.1326 -0.0096 33 1 5.3517 -0.0001 -0.0105 34 1 4.1205 -2.1323 -0.0013 35 1 3.5642 -4.3384 -1.7937 36 1 2.6603 -3.6539 2.1152 37 1 2.5727 -1.8870 2.3153 38 1 0.7715 -2.1517 3.9851 39 1 2.2123 -3.0757 4.4749 40 1 -0.5180 -5.4025 5.1071 41 1 0.9087 -4.6088 5.8163 42 1 -2.6953 -2.4138 7.9622 43 1 -1.1355 -3.3395 3.0131 44 1 -1.0481 -5.1064 2.8131 45 1 -0.6877 -3.9176 0.6534 46 1 0.7531 -4.8416 1.1428 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600566695.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:10 Heat of formation + Delta-G solvation = -61.390042 kcal Electronic energy + Delta-G solvation = -28103.145582 eV Core-core repulsion = 24378.137879 eV Total energy + Delta-G solvation = -3725.007703 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.30067 -40.13258 -39.72409 -37.41377 -36.48240 -34.61157 -33.66587 -32.80324 -31.80318 -30.27167 -28.48473 -27.48306 -25.89870 -24.51789 -24.07294 -23.11175 -22.19498 -21.35612 -20.76058 -19.15223 -18.91915 -17.88410 -17.72249 -17.23333 -16.43492 -16.35832 -16.26058 -15.91778 -15.75973 -15.65694 -15.25153 -14.98695 -14.55298 -14.40316 -14.14675 -13.94714 -13.74643 -13.65094 -13.46909 -13.06948 -12.98682 -12.80139 -12.78373 -12.71740 -12.38288 -12.13709 -12.09625 -11.89960 -11.80408 -11.74417 -11.72369 -11.59424 -11.41982 -10.78314 -9.77188 -9.52799 -9.36225 -8.95202 -8.30044 -6.34888 0.37279 0.49848 1.05958 1.35531 1.36587 1.48454 2.03501 2.34252 2.61201 3.01302 3.04354 3.31252 3.51366 3.91487 3.94803 4.01432 4.08901 4.19680 4.22562 4.24723 4.38803 4.51891 4.54618 4.57197 4.66965 4.73323 4.82723 4.84517 4.92289 4.95728 4.97274 5.01559 5.09510 5.10629 5.15916 5.20983 5.40359 5.49349 5.51445 5.61555 5.63705 5.71390 5.82798 5.88591 6.10847 6.13919 6.35060 6.40899 6.71603 6.94304 7.31663 8.86013 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016689 B = 0.003916 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.348161 B = 7148.410627 C = 7937.877932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.063 4.063 3 C -0.130 4.130 4 C -0.112 4.112 5 C -0.131 4.131 6 C -0.113 4.113 7 C -0.088 4.088 8 C 0.135 3.865 9 H 0.144 0.856 10 C 0.458 3.542 11 O -0.528 6.528 12 O -0.507 6.507 13 N -0.500 5.500 14 C 0.059 3.941 15 C 0.071 3.929 16 N -0.532 5.532 17 C 0.159 3.841 18 C -0.546 4.546 19 H 0.037 0.963 20 C 0.013 3.987 21 N -0.946 5.946 22 Si 0.947 3.053 23 H -0.268 1.268 24 H -0.283 1.283 25 H -0.248 1.248 26 C 0.069 3.931 27 C 0.051 3.949 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.141 0.859 34 H 0.111 0.889 35 H 0.422 0.578 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.018 0.982 39 H 0.064 0.936 40 H 0.032 0.968 41 H 0.025 0.975 42 H 0.265 0.735 43 H 0.021 0.979 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.674 3.144 -20.916 24.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.063 4.063 3 C -0.148 4.148 4 C -0.130 4.130 5 C -0.149 4.149 6 C -0.131 4.131 7 C -0.089 4.089 8 C 0.025 3.975 9 H 0.161 0.839 10 C 0.300 3.700 11 O -0.418 6.418 12 O -0.320 6.320 13 N -0.223 5.223 14 C -0.069 4.069 15 C -0.058 4.058 16 N -0.255 5.255 17 C 0.031 3.969 18 C -0.584 4.584 19 H 0.055 0.945 20 C -0.185 4.185 21 N -0.586 5.586 22 Si 0.771 3.229 23 H -0.194 1.194 24 H -0.209 1.209 25 H -0.171 1.171 26 C -0.060 4.060 27 C -0.077 4.077 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.158 0.842 32 H 0.164 0.836 33 H 0.159 0.841 34 H 0.129 0.871 35 H 0.284 0.716 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.037 0.963 39 H 0.083 0.917 40 H 0.050 0.950 41 H 0.043 0.957 42 H 0.074 0.926 43 H 0.039 0.961 44 H 0.091 0.909 45 H 0.114 0.886 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.354 3.247 -20.495 23.654 hybrid contribution 0.061 -0.894 1.017 1.356 sum 11.415 2.353 -19.478 22.699 Atomic orbital electron populations 1.20793 0.90271 1.03291 1.02345 1.19864 0.96884 0.92191 0.97399 1.21332 0.94839 0.97794 1.00835 1.21484 0.94292 0.98923 0.98282 1.21311 1.00930 0.91947 1.00722 1.21061 0.93147 0.98749 1.00172 1.19074 0.93330 0.92426 1.04076 1.20639 0.95327 0.88832 0.92700 0.83899 1.25029 0.78975 0.86987 0.79020 1.90728 1.61430 1.37471 1.52214 1.84603 1.58892 1.52824 1.35646 1.62681 1.21481 1.36055 1.02103 1.22279 0.92889 1.01188 0.90531 1.21862 0.96392 0.91384 0.96128 1.62615 1.22475 1.34191 1.06208 1.20053 0.94044 0.95298 0.87455 1.21863 1.28098 1.03139 1.05344 0.94483 1.25874 0.94156 0.99294 0.99146 1.70079 1.31748 1.33368 1.23452 0.85713 0.77810 0.80429 0.78977 1.19351 1.20899 1.17119 1.21904 0.92839 1.00141 0.91098 1.22427 0.97271 0.91097 0.96884 0.92145 0.90154 0.90979 0.84158 0.83579 0.84093 0.87068 0.71633 0.92089 0.90676 0.96344 0.91747 0.94977 0.95679 0.92563 0.96094 0.90925 0.88612 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.29 9.56 71.24 0.68 -1.61 16 2 C -0.06 -1.39 5.88 -19.87 -0.12 -1.51 16 3 C -0.13 -2.51 9.70 22.27 0.22 -2.29 16 4 C -0.11 -1.94 10.05 22.27 0.22 -1.72 16 5 C -0.13 -2.42 10.05 22.27 0.22 -2.20 16 6 C -0.11 -2.45 8.08 22.27 0.18 -2.27 16 7 C -0.09 -2.05 4.03 -19.87 -0.08 -2.13 16 8 C 0.14 3.24 1.85 43.42 0.08 3.32 16 9 H 0.14 2.87 6.60 -2.39 -0.02 2.85 16 10 C 0.46 10.77 5.42 71.24 0.39 11.16 16 11 O -0.53 -15.87 12.33 21.97 0.27 -15.60 16 12 O -0.51 -8.50 12.56 -51.42 -0.65 -9.14 16 13 N -0.50 -15.28 4.66 -879.28 -4.09 -19.38 16 14 C 0.06 2.02 4.89 86.31 0.42 2.44 16 15 C 0.07 3.00 5.24 86.31 0.45 3.46 16 16 N -0.53 -23.44 4.92 -900.30 -4.43 -27.86 16 17 C 0.16 7.89 4.23 85.56 0.36 8.25 16 18 C -0.55 -31.59 8.23 25.60 0.21 -31.38 16 19 H 0.04 2.40 6.06 -2.91 -0.02 2.38 16 20 C 0.01 0.78 5.47 84.65 0.46 1.24 16 21 N -0.95 -59.50 13.96 21.45 0.30 -59.20 16 22 Si 0.95 44.69 27.56 68.60 1.89 46.58 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 24 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 25 H -0.25 -10.95 6.41 99.48 0.64 -10.32 16 26 C 0.07 2.77 5.32 86.31 0.46 3.23 16 27 C 0.05 1.61 5.25 86.31 0.45 2.06 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.08 1.31 8.09 -2.38 -0.02 1.29 16 30 H 0.07 1.37 6.20 -2.39 -0.01 1.36 16 31 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 32 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 33 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.11 2.39 6.36 -2.91 -0.02 2.37 16 35 H 0.42 3.61 9.10 -74.05 -0.67 2.93 16 36 H 0.06 2.20 5.52 -2.39 -0.01 2.19 16 37 H 0.07 2.47 6.46 -2.39 -0.02 2.46 16 38 H 0.02 0.90 6.46 -2.39 -0.02 0.88 16 39 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.03 1.58 6.85 -2.39 -0.02 1.56 16 41 H 0.03 1.24 7.80 -2.39 -0.02 1.22 16 42 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 43 H 0.02 0.97 6.95 -2.39 -0.02 0.95 16 44 H 0.07 2.81 8.13 -2.38 -0.02 2.79 16 45 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 46 H 0.06 2.02 5.68 -2.39 -0.01 2.01 16 Total: -1.00 -72.47 353.00 -1.82 -74.30 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.26 Total: 20.26 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 4.62 Total: -9.95 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -8.22 Total: -106.44 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.37 Total: -24.74 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.89 Total: 46.58 kcal Total: -72.47 -1.82 -74.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600566695.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.905 kcal (2) G-P(sol) polarization free energy of solvation -72.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds