Wall clock time and date at job start Tue Mar 31 2020 13:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38255 * 120.00050 * 2 1 4 4 C 1.38213 * 120.00101 * 180.02562 * 3 2 1 5 5 C 1.38253 * 119.99885 * 0.02562 * 4 3 2 6 6 C 1.38212 * 119.99944 * 359.95060 * 5 4 3 7 7 C 1.38209 * 120.00002 * 179.97438 * 2 1 3 8 8 C 1.50700 * 120.00126 * 0.02562 * 7 2 1 9 9 H 1.08996 * 109.47241 * 39.93674 * 8 7 2 10 10 C 1.50697 * 109.47234 * 279.93376 * 8 7 2 11 11 O 1.20823 * 120.00144 * 239.99770 * 10 8 7 12 12 O 1.34227 * 119.99871 * 60.00324 * 10 8 7 13 13 N 1.46906 * 109.47186 * 159.93440 * 8 7 2 14 14 C 1.46957 * 111.00104 * 303.80146 * 13 8 7 15 15 C 1.53047 * 109.36840 * 176.80956 * 14 13 8 16 16 N 1.46963 * 109.36125 * 58.40189 * 15 14 13 17 17 C 1.46895 * 110.99844 * 176.81677 * 16 15 14 18 18 C 1.50699 * 109.47441 * 58.97627 * 17 16 15 19 19 H 1.07994 * 120.00250 * 5.00904 * 18 17 16 20 20 C 1.37881 * 119.99968 * 185.01053 * 18 17 16 21 21 N 1.31514 * 119.99809 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99932 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47071 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46926 * 119.99929 * 22 20 18 25 25 H 1.48498 * 109.47162 * 240.00004 * 22 20 18 26 26 C 1.46966 * 110.87870 * 300.68089 * 16 15 14 27 27 C 1.46954 * 110.99817 * 180.02562 * 13 8 7 28 28 H 1.08995 * 109.47527 * 89.99474 * 1 2 3 29 29 H 1.09001 * 109.47059 * 209.99522 * 1 2 3 30 30 H 1.09002 * 109.47195 * 329.99438 * 1 2 3 31 31 H 1.07998 * 119.99729 * 0.28933 * 3 2 1 32 32 H 1.07998 * 119.99940 * 179.97438 * 4 3 2 33 33 H 1.08001 * 119.99989 * 179.97438 * 5 4 3 34 34 H 1.08004 * 119.99970 * 180.02562 * 6 5 4 35 35 H 0.96697 * 116.99998 * 180.02562 * 12 10 8 36 36 H 1.09003 * 109.48930 * 296.78203 * 14 13 8 37 37 H 1.08999 * 109.48676 * 56.84163 * 14 13 8 38 38 H 1.08993 * 109.48974 * 298.44055 * 15 14 13 39 39 H 1.08989 * 109.51042 * 178.37353 * 15 14 13 40 40 H 1.09004 * 109.47067 * 178.97818 * 17 16 15 41 41 H 1.08998 * 109.46864 * 298.97193 * 17 16 15 42 42 H 0.97004 * 120.00248 * 179.97438 * 21 20 18 43 43 H 1.08997 * 109.48524 * 299.35528 * 26 16 15 44 44 H 1.08999 * 109.48595 * 179.29055 * 26 16 15 45 45 H 1.09005 * 109.49073 * 303.15068 * 27 13 8 46 46 H 1.09002 * 109.49445 * 63.20175 * 27 13 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0016 6 6 3.5806 -1.1969 -0.0011 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 1 0.5808 -2.4229 -0.6595 10 6 0.9806 -2.8142 1.3999 11 8 1.3470 -3.8279 1.9458 12 8 0.1602 -1.9662 2.0398 13 7 2.3266 -3.5767 -0.4741 14 6 2.8713 -3.2630 -1.8024 15 6 3.8443 -4.3660 -2.2255 16 7 3.1416 -5.6567 -2.2390 17 6 4.0236 -6.7313 -2.7135 18 6 5.2303 -6.8241 -1.8155 19 1 5.2936 -6.2082 -0.9307 20 6 6.2535 -7.6955 -2.1237 21 7 6.1761 -8.4459 -3.2009 22 14 7.7495 -7.8101 -1.0110 23 1 7.5933 -6.8689 0.1269 24 1 7.8759 -9.1960 -0.4926 25 1 8.9684 -7.4570 -1.7823 26 6 2.5969 -5.9704 -0.9105 27 6 1.6238 -4.8672 -0.4881 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6583 2.1326 0.0047 32 1 4.1204 2.1326 -0.0010 33 1 5.3517 0.0000 -0.0024 34 1 4.1206 -2.1323 -0.0015 35 1 -0.1101 -2.2090 2.9359 36 1 2.0566 -3.2002 -2.5240 37 1 3.3974 -2.3092 -1.7637 38 1 4.6730 -4.4105 -1.5190 39 1 4.2276 -4.1504 -3.2227 40 1 3.4842 -7.6783 -2.6964 41 1 4.3447 -6.5145 -3.7323 42 1 6.8961 -9.0587 -3.4180 43 1 3.4116 -6.0331 -0.1891 44 1 2.0708 -6.9242 -0.9493 45 1 1.2404 -5.0834 0.5092 46 1 0.7950 -4.8224 -1.1946 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600566696.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:13 Heat of formation + Delta-G solvation = -34.872272 kcal Electronic energy + Delta-G solvation = -27913.672399 eV Core-core repulsion = 24189.814593 eV Total energy + Delta-G solvation = -3723.857806 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.06185 -39.35269 -38.36322 -36.28587 -35.25629 -33.16812 -32.48742 -31.37701 -30.23423 -28.64791 -26.94805 -26.48828 -24.44334 -23.10047 -22.56575 -21.79801 -21.38321 -20.34211 -19.13121 -18.13657 -17.01157 -16.68634 -16.36473 -15.93985 -15.79022 -15.00567 -14.73179 -14.38939 -14.31709 -14.14888 -14.04735 -13.78565 -13.43161 -13.18334 -13.02094 -12.89168 -12.50711 -12.23069 -12.10895 -11.84086 -11.71883 -11.50212 -11.21296 -11.06441 -11.05180 -10.94663 -10.79133 -10.51663 -10.43490 -10.20978 -9.95706 -9.73783 -9.45474 -8.76602 -8.70144 -8.39942 -8.21515 -7.13955 -5.99363 -4.07886 1.15507 1.33808 2.14700 2.76867 3.29467 3.37689 3.42820 3.64334 4.00968 4.44541 4.46862 4.74612 4.86687 4.96656 5.04181 5.08436 5.12563 5.25043 5.31277 5.40334 5.47104 5.51905 5.60668 5.66046 5.81736 5.85548 5.91192 5.94368 5.99015 6.12706 6.17558 6.28640 6.39641 6.46539 6.48882 6.51737 6.65914 6.81719 6.87076 6.93491 7.14405 7.17616 7.36163 7.56257 7.84087 7.93673 8.08451 8.31277 8.33617 9.03157 9.59037 11.05725 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016417 B = 0.003796 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.157632 B = 7373.612424 C = 8001.298593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.062 4.062 3 C -0.130 4.130 4 C -0.110 4.110 5 C -0.133 4.133 6 C -0.082 4.082 7 C -0.092 4.092 8 C 0.138 3.862 9 H 0.084 0.916 10 C 0.485 3.515 11 O -0.485 6.485 12 O -0.512 6.512 13 N -0.517 5.517 14 C 0.051 3.949 15 C 0.067 3.933 16 N -0.544 5.544 17 C 0.187 3.813 18 C -0.546 4.546 19 H 0.060 0.940 20 C 0.064 3.936 21 N -0.892 5.892 22 Si 0.888 3.112 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.068 3.932 27 C 0.045 3.955 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.143 0.857 35 H 0.405 0.595 36 H 0.037 0.963 37 H 0.082 0.918 38 H 0.051 0.949 39 H 0.071 0.929 40 H 0.027 0.973 41 H 0.034 0.966 42 H 0.261 0.739 43 H 0.049 0.951 44 H 0.068 0.932 45 H 0.094 0.906 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.050 19.449 7.288 24.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.063 4.063 3 C -0.148 4.148 4 C -0.128 4.128 5 C -0.151 4.151 6 C -0.100 4.100 7 C -0.093 4.093 8 C 0.029 3.971 9 H 0.102 0.898 10 C 0.326 3.674 11 O -0.370 6.370 12 O -0.325 6.325 13 N -0.243 5.243 14 C -0.076 4.076 15 C -0.062 4.062 16 N -0.269 5.269 17 C 0.061 3.939 18 C -0.585 4.585 19 H 0.078 0.922 20 C -0.138 4.138 21 N -0.531 5.531 22 Si 0.715 3.285 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.061 4.061 27 C -0.082 4.082 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.161 0.839 35 H 0.264 0.736 36 H 0.055 0.945 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.045 0.955 41 H 0.052 0.948 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.112 0.888 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -11.742 19.104 6.933 23.471 hybrid contribution 0.871 -0.348 1.140 1.476 sum -10.871 18.756 8.072 23.133 Atomic orbital electron populations 1.21048 0.91113 1.04131 1.02095 1.19714 0.96150 0.92210 0.98190 1.20937 0.94221 0.97151 1.02519 1.21178 0.94310 0.98067 0.99220 1.21192 1.00152 0.92300 1.01482 1.21340 0.93516 0.99218 0.95920 1.19181 0.93907 0.91777 1.04431 1.19921 0.95811 0.91424 0.89986 0.89844 1.23148 0.75111 0.80578 0.88586 1.90698 1.53252 1.26230 1.66869 1.84563 1.61728 1.52076 1.34087 1.61913 1.34376 1.00905 1.27151 1.22551 0.98340 0.99772 0.86951 1.21894 0.94745 0.88868 1.00648 1.62728 1.37093 1.03644 1.23425 1.19732 0.89591 0.88696 0.95868 1.21812 1.04086 1.22695 1.09925 0.92207 1.24957 0.98292 0.95452 0.95080 1.69957 1.33112 1.24866 1.25187 0.86605 0.83004 0.77913 0.80930 1.19750 1.21009 1.21012 1.21877 0.96929 0.95639 0.91626 1.22612 0.95731 0.88301 1.01547 0.91420 0.89451 0.91572 0.86141 0.86221 0.85852 0.83916 0.73563 0.94481 0.89968 0.93110 0.91096 0.95503 0.94781 0.92942 0.93235 0.91322 0.88802 0.95035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.08 9.01 36.01 0.32 -0.75 16 2 C -0.06 -0.66 5.75 -104.63 -0.60 -1.26 16 3 C -0.13 -1.27 9.70 -39.58 -0.38 -1.65 16 4 C -0.11 -1.08 10.05 -39.58 -0.40 -1.48 16 5 C -0.13 -1.49 10.05 -39.59 -0.40 -1.89 16 6 C -0.08 -1.07 7.25 -39.58 -0.29 -1.35 16 7 C -0.09 -1.14 4.41 -104.63 -0.46 -1.60 16 8 C 0.14 1.80 1.57 -70.01 -0.11 1.69 16 9 H 0.08 0.99 7.28 -51.93 -0.38 0.61 16 10 C 0.49 6.22 7.25 36.00 0.26 6.49 16 11 O -0.49 -7.82 14.59 -18.75 -0.27 -8.09 16 12 O -0.51 -4.59 10.33 -39.25 -0.41 -4.99 16 13 N -0.52 -8.16 3.54 -229.27 -0.81 -8.97 16 14 C 0.05 0.81 4.72 -3.77 -0.02 0.79 16 15 C 0.07 1.32 5.24 -3.77 -0.02 1.30 16 16 N -0.54 -11.81 4.92 -235.91 -1.16 -12.97 16 17 C 0.19 4.84 5.14 -4.98 -0.03 4.82 16 18 C -0.55 -15.12 7.66 -34.44 -0.26 -15.39 16 19 H 0.06 1.67 5.82 -52.49 -0.31 1.37 16 20 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 21 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 22 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.07 1.39 5.32 -3.76 -0.02 1.37 16 27 C 0.05 0.77 5.21 -3.77 -0.02 0.75 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.76 4.07 -51.93 -0.21 0.55 16 30 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 31 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.14 2.10 6.45 -52.48 -0.34 1.76 16 35 H 0.41 2.01 9.10 45.56 0.41 2.42 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 1.19 4.97 -51.93 -0.26 0.93 16 38 H 0.05 1.10 6.61 -51.93 -0.34 0.76 16 39 H 0.07 1.38 8.14 -51.94 -0.42 0.96 16 40 H 0.03 0.74 8.12 -51.93 -0.42 0.32 16 41 H 0.03 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.05 1.13 6.78 -51.93 -0.35 0.78 16 44 H 0.07 1.38 8.12 -51.93 -0.42 0.96 16 45 H 0.09 1.60 5.30 -51.93 -0.28 1.32 16 46 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 355.20 15.07 5.35 5.35 Total: -1.00 -32.03 355.20 -9.93 -41.95 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.83 Total: 3.12 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -2.52 Total: -6.45 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -1.24 Total: -47.63 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.68 Total: -13.08 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.03 -9.93 -41.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600566696.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.082 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds