Wall clock time and date at job start Tue Mar 31 2020 13:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38255 * 120.00050 * 2 1 4 4 C 1.38213 * 120.00101 * 180.02562 * 3 2 1 5 5 C 1.38253 * 119.99885 * 0.02562 * 4 3 2 6 6 C 1.38212 * 119.99944 * 359.95060 * 5 4 3 7 7 C 1.38209 * 120.00002 * 179.97438 * 2 1 3 8 8 C 1.50700 * 120.00126 * 0.02562 * 7 2 1 9 9 H 1.08996 * 109.47241 * 39.93674 * 8 7 2 10 10 C 1.50697 * 109.47234 * 279.93376 * 8 7 2 11 11 O 1.20823 * 120.00144 * 239.99770 * 10 8 7 12 12 O 1.34227 * 119.99871 * 60.00324 * 10 8 7 13 13 N 1.46906 * 109.47186 * 159.93440 * 8 7 2 14 14 C 1.46957 * 111.00104 * 303.80146 * 13 8 7 15 15 C 1.53047 * 109.36840 * 176.80956 * 14 13 8 16 16 N 1.46963 * 109.36125 * 58.40189 * 15 14 13 17 17 C 1.46895 * 110.99844 * 176.81677 * 16 15 14 18 18 C 1.50699 * 109.47441 * 58.97627 * 17 16 15 19 19 H 1.07994 * 120.00250 * 5.00904 * 18 17 16 20 20 C 1.37881 * 119.99968 * 185.01053 * 18 17 16 21 21 N 1.31514 * 119.99809 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99932 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47071 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46926 * 119.99929 * 22 20 18 25 25 H 1.48498 * 109.47162 * 240.00004 * 22 20 18 26 26 C 1.46966 * 110.87870 * 300.68089 * 16 15 14 27 27 C 1.46954 * 110.99817 * 180.02562 * 13 8 7 28 28 H 1.08995 * 109.47527 * 89.99474 * 1 2 3 29 29 H 1.09001 * 109.47059 * 209.99522 * 1 2 3 30 30 H 1.09002 * 109.47195 * 329.99438 * 1 2 3 31 31 H 1.07998 * 119.99729 * 0.28933 * 3 2 1 32 32 H 1.07998 * 119.99940 * 179.97438 * 4 3 2 33 33 H 1.08001 * 119.99989 * 179.97438 * 5 4 3 34 34 H 1.08004 * 119.99970 * 180.02562 * 6 5 4 35 35 H 0.96697 * 116.99998 * 180.02562 * 12 10 8 36 36 H 1.09003 * 109.48930 * 296.78203 * 14 13 8 37 37 H 1.08999 * 109.48676 * 56.84163 * 14 13 8 38 38 H 1.08993 * 109.48974 * 298.44055 * 15 14 13 39 39 H 1.08989 * 109.51042 * 178.37353 * 15 14 13 40 40 H 1.09004 * 109.47067 * 178.97818 * 17 16 15 41 41 H 1.08998 * 109.46864 * 298.97193 * 17 16 15 42 42 H 0.97004 * 120.00248 * 179.97438 * 21 20 18 43 43 H 1.08997 * 109.48524 * 299.35528 * 26 16 15 44 44 H 1.08999 * 109.48595 * 179.29055 * 26 16 15 45 45 H 1.09005 * 109.49073 * 303.15068 * 27 13 8 46 46 H 1.09002 * 109.49445 * 63.20175 * 27 13 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0016 6 6 3.5806 -1.1969 -0.0011 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 1 0.5808 -2.4229 -0.6595 10 6 0.9806 -2.8142 1.3999 11 8 1.3470 -3.8279 1.9458 12 8 0.1602 -1.9662 2.0398 13 7 2.3266 -3.5767 -0.4741 14 6 2.8713 -3.2630 -1.8024 15 6 3.8443 -4.3660 -2.2255 16 7 3.1416 -5.6567 -2.2390 17 6 4.0236 -6.7313 -2.7135 18 6 5.2303 -6.8241 -1.8155 19 1 5.2936 -6.2082 -0.9307 20 6 6.2535 -7.6955 -2.1237 21 7 6.1761 -8.4459 -3.2009 22 14 7.7495 -7.8101 -1.0110 23 1 7.5933 -6.8689 0.1269 24 1 7.8759 -9.1960 -0.4926 25 1 8.9684 -7.4570 -1.7823 26 6 2.5969 -5.9704 -0.9105 27 6 1.6238 -4.8672 -0.4881 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6583 2.1326 0.0047 32 1 4.1204 2.1326 -0.0010 33 1 5.3517 0.0000 -0.0024 34 1 4.1206 -2.1323 -0.0015 35 1 -0.1101 -2.2090 2.9359 36 1 2.0566 -3.2002 -2.5240 37 1 3.3974 -2.3092 -1.7637 38 1 4.6730 -4.4105 -1.5190 39 1 4.2276 -4.1504 -3.2227 40 1 3.4842 -7.6783 -2.6964 41 1 4.3447 -6.5145 -3.7323 42 1 6.8961 -9.0587 -3.4180 43 1 3.4116 -6.0331 -0.1891 44 1 2.0708 -6.9242 -0.9493 45 1 1.2404 -5.0834 0.5092 46 1 0.7950 -4.8224 -1.1946 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600566696.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:13 Heat of formation + Delta-G solvation = -56.820352 kcal Electronic energy + Delta-G solvation = -27914.624139 eV Core-core repulsion = 24189.814593 eV Total energy + Delta-G solvation = -3724.809546 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.07514 -40.28505 -39.71124 -37.34837 -36.63681 -34.66282 -33.81935 -32.59766 -31.67079 -29.96669 -28.30632 -27.54440 -26.16820 -24.51266 -23.57222 -23.40602 -22.42580 -21.29052 -20.71918 -19.09905 -18.48406 -17.95140 -17.59995 -17.27996 -16.78484 -16.54516 -15.94428 -15.82441 -15.58111 -15.43822 -15.35627 -14.93933 -14.71544 -14.50872 -14.14046 -13.87298 -13.73064 -13.59324 -13.42958 -12.98718 -12.91292 -12.79712 -12.66151 -12.58600 -12.46773 -12.30616 -12.15963 -11.98475 -11.92366 -11.85979 -11.77124 -11.36867 -11.07334 -10.61845 -9.63460 -9.53987 -9.40356 -9.04987 -8.16993 -6.35639 0.32612 0.51715 1.16883 1.33470 1.35212 1.47480 1.85969 2.36141 2.70577 2.96836 3.07826 3.35797 3.53310 3.91484 3.94627 4.12170 4.14098 4.18959 4.22147 4.31344 4.40418 4.45152 4.51144 4.54672 4.68330 4.68781 4.86693 4.92214 4.93728 5.02250 5.06728 5.09807 5.16053 5.19101 5.23691 5.32046 5.45311 5.55673 5.60744 5.66030 5.70051 5.74163 5.92854 5.94979 6.04255 6.14363 6.24967 6.48368 6.84688 6.99918 7.35473 8.85827 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016417 B = 0.003796 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.157632 B = 7373.612424 C = 8001.298593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.063 4.063 3 C -0.129 4.129 4 C -0.108 4.108 5 C -0.143 4.143 6 C -0.104 4.104 7 C -0.105 4.105 8 C 0.139 3.861 9 H 0.103 0.897 10 C 0.493 3.507 11 O -0.526 6.526 12 O -0.495 6.495 13 N -0.532 5.532 14 C 0.068 3.932 15 C 0.069 3.931 16 N -0.540 5.540 17 C 0.200 3.800 18 C -0.553 4.553 19 H 0.052 0.948 20 C 0.014 3.986 21 N -0.925 5.925 22 Si 0.955 3.045 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.274 1.274 26 C 0.071 3.929 27 C 0.059 3.941 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.149 0.851 32 H 0.145 0.855 33 H 0.130 0.870 34 H 0.116 0.884 35 H 0.425 0.575 36 H 0.047 0.953 37 H 0.099 0.901 38 H 0.024 0.976 39 H 0.068 0.932 40 H 0.003 0.997 41 H 0.011 0.989 42 H 0.265 0.735 43 H 0.018 0.982 44 H 0.065 0.935 45 H 0.097 0.903 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.181 22.423 8.227 27.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.064 4.064 3 C -0.147 4.147 4 C -0.126 4.126 5 C -0.161 4.161 6 C -0.123 4.123 7 C -0.105 4.105 8 C 0.030 3.970 9 H 0.120 0.880 10 C 0.335 3.665 11 O -0.415 6.415 12 O -0.309 6.309 13 N -0.258 5.258 14 C -0.059 4.059 15 C -0.060 4.060 16 N -0.263 5.263 17 C 0.073 3.927 18 C -0.592 4.592 19 H 0.070 0.930 20 C -0.185 4.185 21 N -0.565 5.565 22 Si 0.780 3.220 23 H -0.197 1.197 24 H -0.203 1.203 25 H -0.200 1.200 26 C -0.057 4.057 27 C -0.068 4.068 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.167 0.833 32 H 0.163 0.837 33 H 0.148 0.852 34 H 0.134 0.866 35 H 0.288 0.712 36 H 0.065 0.935 37 H 0.117 0.883 38 H 0.042 0.958 39 H 0.086 0.914 40 H 0.021 0.979 41 H 0.029 0.971 42 H 0.074 0.926 43 H 0.036 0.964 44 H 0.083 0.917 45 H 0.115 0.885 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.903 22.113 7.891 26.791 hybrid contribution 1.170 -1.167 0.883 1.874 sum -11.733 20.947 8.773 25.561 Atomic orbital electron populations 1.21091 0.89421 1.04821 1.02938 1.19977 0.97393 0.91700 0.97304 1.21317 0.94303 0.97961 1.01075 1.21500 0.94767 0.98399 0.97892 1.21348 1.00722 0.92399 1.01654 1.21209 0.94090 0.98861 0.98099 1.19167 0.93557 0.92030 1.05770 1.19950 0.95938 0.90609 0.90482 0.88008 1.23083 0.74768 0.80100 0.88502 1.90692 1.54968 1.28021 1.67791 1.84508 1.60316 1.50620 1.35421 1.61754 1.35655 1.01399 1.27031 1.22340 0.97736 0.98542 0.87309 1.21900 0.95080 0.89056 0.99917 1.62674 1.36055 1.03351 1.24269 1.19401 0.89570 0.89091 0.94610 1.21965 1.04893 1.22564 1.09797 0.93006 1.25761 1.01240 0.95039 0.96474 1.70062 1.34254 1.25496 1.26668 0.85553 0.79465 0.77989 0.78963 1.19721 1.20289 1.19968 1.21851 0.96628 0.97362 0.89896 1.22389 0.94766 0.87827 1.01807 0.90437 0.89822 0.89823 0.83349 0.83677 0.85209 0.86638 0.71222 0.93523 0.88313 0.95803 0.91368 0.97856 0.97104 0.92565 0.96408 0.91685 0.88543 0.93684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 9.01 71.24 0.64 -1.00 16 2 C -0.06 -1.14 5.75 -19.87 -0.11 -1.25 16 3 C -0.13 -2.02 9.70 22.27 0.22 -1.80 16 4 C -0.11 -1.80 10.05 22.27 0.22 -1.57 16 5 C -0.14 -3.03 10.05 22.27 0.22 -2.80 16 6 C -0.10 -2.66 7.25 22.27 0.16 -2.50 16 7 C -0.10 -2.40 4.41 -19.87 -0.09 -2.49 16 8 C 0.14 3.41 1.57 43.42 0.07 3.48 16 9 H 0.10 2.13 7.28 -2.39 -0.02 2.12 16 10 C 0.49 11.92 7.25 71.23 0.52 12.44 16 11 O -0.53 -16.74 14.59 21.97 0.32 -16.42 16 12 O -0.49 -7.53 10.33 -51.39 -0.53 -8.06 16 13 N -0.53 -16.71 3.54 -879.28 -3.11 -19.82 16 14 C 0.07 2.13 4.72 86.31 0.41 2.54 16 15 C 0.07 2.81 5.24 86.31 0.45 3.26 16 16 N -0.54 -24.34 4.92 -900.28 -4.43 -28.76 16 17 C 0.20 10.91 5.14 85.56 0.44 11.35 16 18 C -0.55 -31.88 7.66 25.60 0.20 -31.68 16 19 H 0.05 3.03 5.82 -2.91 -0.02 3.01 16 20 C 0.01 0.83 5.46 84.66 0.46 1.29 16 21 N -0.92 -56.05 13.29 21.45 0.28 -55.77 16 22 Si 0.95 45.55 29.54 68.60 2.03 47.57 16 23 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 26 C 0.07 3.02 5.32 86.31 0.46 3.48 16 27 C 0.06 2.01 5.21 86.31 0.45 2.46 16 28 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.08 1.16 4.07 -2.39 -0.01 1.15 16 30 H 0.08 0.81 8.09 -2.39 -0.02 0.79 16 31 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 32 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 33 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 34 H 0.12 3.54 6.45 -2.91 -0.02 3.52 16 35 H 0.43 3.03 9.10 -74.06 -0.67 2.35 16 36 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.10 2.83 4.97 -2.39 -0.01 2.82 16 38 H 0.02 1.09 6.61 -2.39 -0.02 1.07 16 39 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 40 H 0.00 0.19 8.12 -2.39 -0.02 0.17 16 41 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 43 H 0.02 0.85 6.78 -2.39 -0.02 0.84 16 44 H 0.06 2.73 8.12 -2.39 -0.02 2.71 16 45 H 0.10 3.29 5.30 -2.38 -0.01 3.28 16 46 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -71.32 355.20 -0.39 -71.71 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.33 Total: 14.36 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 4.72 Total: -4.81 kcal Atomic # 7 Polarization: -97.10 SS G_CDS: -7.25 Total: -104.36 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.21 Total: -24.48 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -71.32 -0.39 -71.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600566696.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.888 kcal (2) G-P(sol) polarization free energy of solvation -71.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds