Wall clock time and date at job start Tue Mar 31 2020 12:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00132 * 2 1 4 4 H 1.48499 * 109.46902 * 240.00008 * 3 2 1 5 5 H 1.48500 * 109.47047 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47321 * 119.99882 * 3 2 1 7 7 C 1.37876 * 119.99390 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99412 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00407 * 0.02562 * 7 2 1 10 10 H 1.08991 * 109.53767 * 60.09980 * 9 7 2 11 11 C 1.53127 * 109.50432 * 299.99742 * 9 7 2 12 12 C 1.53122 * 109.15844 * 182.40495 * 11 9 7 13 13 C 1.53038 * 109.27881 * 57.65758 * 12 11 9 14 14 N 1.46846 * 109.52523 * 300.81709 * 13 12 11 15 15 C 1.46893 * 110.99868 * 185.84109 * 14 13 12 16 16 C 1.50693 * 109.47489 * 66.04709 * 15 14 13 17 17 N 1.36419 * 125.45918 * 259.97652 * 16 15 14 18 18 H 0.97008 * 124.81072 * 359.97438 * 17 16 15 19 19 C 1.34628 * 110.38335 * 180.02562 * 17 16 15 20 20 C 1.37838 * 108.21010 * 359.97438 * 19 17 16 21 21 C 1.47105 * 127.02953 * 179.73838 * 20 19 17 22 22 O 1.21544 * 120.00487 * 174.45100 * 21 20 19 23 23 O 1.34787 * 119.99587 * 354.44903 * 21 20 19 24 24 C 1.34440 * 125.45602 * 79.99434 * 16 15 14 25 25 C 1.50699 * 126.81499 * 359.97438 * 24 16 15 26 26 C 1.52995 * 117.49916 * 131.22640 * 25 24 16 27 27 C 1.53002 * 117.49991 * 62.56659 * 25 24 16 28 28 C 1.46847 * 111.19754 * 61.74199 * 14 13 12 29 29 H 0.97003 * 120.00363 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.51882 * 62.50323 * 11 9 7 31 31 H 1.08993 * 109.57374 * 302.34456 * 11 9 7 32 32 H 1.09000 * 109.50372 * 297.71198 * 12 11 9 33 33 H 1.09000 * 109.49988 * 177.59855 * 12 11 9 34 34 H 1.09004 * 109.46224 * 180.79999 * 13 12 11 35 35 H 1.08999 * 109.46189 * 60.83701 * 13 12 11 36 36 H 1.08997 * 109.47422 * 306.04262 * 15 14 13 37 37 H 1.09013 * 109.46779 * 186.04685 * 15 14 13 38 38 H 1.08008 * 125.89762 * 180.02562 * 19 17 16 39 39 H 0.96698 * 116.99771 * 180.02562 * 23 21 20 40 40 H 1.09000 * 115.54703 * 276.90226 * 25 24 16 41 41 H 1.08998 * 117.50201 * 359.97438 * 26 25 24 42 42 H 1.09007 * 117.50008 * 145.02410 * 26 25 24 43 43 H 1.08997 * 117.49883 * 214.98091 * 27 25 24 44 44 H 1.08995 * 117.49820 * 359.97438 * 27 25 24 45 45 H 1.09001 * 109.46630 * 58.27422 * 28 14 13 46 46 H 1.08998 * 109.46625 * 178.24062 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6256 -2.5589 -0.8901 11 6 0.3698 -2.5808 1.2503 12 6 -0.3459 -3.9342 1.2730 13 6 0.6942 -5.0564 1.2417 14 7 1.5110 -4.9348 0.0274 15 6 2.4284 -6.0742 -0.1061 16 6 1.6343 -7.3347 -0.3329 17 7 1.3342 -8.2633 0.6203 18 1 1.6032 -8.2087 1.5508 19 6 0.6128 -9.2669 0.0866 20 6 0.4281 -8.9997 -1.2529 21 6 -0.2967 -9.8270 -2.2297 22 8 -0.4688 -9.4202 -3.3620 23 8 -0.7701 -11.0364 -1.8688 24 6 1.1084 -7.7245 -1.5072 25 6 1.1991 -6.9962 -2.8234 26 6 1.6253 -7.8047 -4.0503 27 6 2.5914 -6.7953 -3.4252 28 6 2.2447 -3.6630 0.0061 29 1 -0.4851 0.8400 -0.0004 30 1 -0.3681 -1.7788 1.2286 31 1 0.9897 -2.4814 2.1412 32 1 -0.9965 -4.0165 0.4023 33 1 -0.9417 -4.0155 2.1821 34 1 0.1874 -6.0215 1.2434 35 1 1.3356 -4.9817 2.1198 36 1 3.0176 -6.1751 0.8053 37 1 3.0944 -5.9071 -0.9528 38 1 0.2420 -10.1318 0.6167 39 1 -1.2395 -11.5437 -2.5451 40 1 0.4669 -6.2027 -2.9730 41 1 1.8406 -8.8634 -3.9055 42 1 1.1738 -7.5430 -5.0073 43 1 2.7750 -5.8699 -3.9711 44 1 3.4418 -7.1895 -2.8689 45 1 2.8789 -3.5947 0.8900 46 1 2.8641 -3.6160 -0.8895 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064221.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:31 Heat of formation + Delta-G solvation = -45.234417 kcal Electronic energy + Delta-G solvation = -27327.157596 eV Core-core repulsion = 23602.850453 eV Total energy + Delta-G solvation = -3724.307143 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.36045 -40.46260 -39.57807 -37.83658 -36.66620 -35.67451 -33.71330 -31.92165 -31.65943 -30.68980 -27.01131 -26.88974 -24.87235 -23.91229 -23.47913 -23.11745 -22.84889 -21.00811 -20.33353 -19.58504 -18.66401 -18.48545 -18.10322 -16.94957 -16.69037 -16.60298 -16.26885 -16.18750 -15.74906 -15.24697 -15.05572 -14.96241 -14.65687 -14.35772 -14.23725 -14.00010 -13.73652 -13.36956 -13.21410 -12.82634 -12.68842 -12.54551 -12.53120 -12.49327 -12.37658 -12.19436 -11.83850 -11.71085 -11.62316 -11.37450 -11.22581 -10.90033 -10.78278 -10.64625 -10.35825 -9.67294 -9.18488 -8.99066 -8.05564 -6.19817 0.62448 1.30791 1.42830 1.44084 1.51438 2.16548 2.39627 2.44307 2.50713 3.05510 3.21471 3.25601 3.86654 3.92099 4.07267 4.10877 4.19667 4.21153 4.27846 4.40287 4.41408 4.48517 4.61665 4.70506 4.79102 4.81565 4.86659 4.90123 4.96267 4.99979 5.10114 5.13044 5.18928 5.20799 5.35342 5.38483 5.40577 5.53692 5.65396 5.73456 5.80611 5.97884 5.98961 6.15537 6.23833 6.37154 6.48238 6.60546 6.93731 7.27424 7.48178 8.98654 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020011 B = 0.003239 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.891094 B = 8641.717846 C = 9159.728825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.953 3.047 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.054 0.946 9 C 0.054 3.946 10 H -0.008 1.008 11 C -0.102 4.102 12 C -0.110 4.110 13 C 0.072 3.928 14 N -0.541 5.541 15 C 0.127 3.873 16 C 0.023 3.977 17 N -0.528 5.528 18 H 0.434 0.566 19 C 0.111 3.889 20 C -0.262 4.262 21 C 0.552 3.448 22 O -0.550 6.550 23 O -0.512 6.512 24 C -0.069 4.069 25 C -0.084 4.084 26 C -0.142 4.142 27 C -0.167 4.167 28 C 0.085 3.915 29 H 0.259 0.741 30 H 0.054 0.946 31 H 0.026 0.974 32 H 0.041 0.959 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.033 0.967 36 H 0.053 0.947 37 H 0.093 0.907 38 H 0.221 0.779 39 H 0.426 0.574 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.022 0.978 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.109 -22.756 2.830 23.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.573 4.573 8 H 0.072 0.928 9 C 0.035 3.965 10 H 0.010 0.990 11 C -0.141 4.141 12 C -0.148 4.148 13 C -0.056 4.056 14 N -0.265 5.265 15 C -0.001 4.001 16 C -0.086 4.086 17 N -0.123 5.123 18 H 0.275 0.725 19 C -0.028 4.028 20 C -0.270 4.270 21 C 0.399 3.601 22 O -0.442 6.442 23 O -0.326 6.326 24 C -0.075 4.075 25 C -0.103 4.103 26 C -0.179 4.179 27 C -0.204 4.204 28 C -0.042 4.042 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.237 0.763 39 H 0.287 0.713 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.113 0.887 44 H 0.118 0.882 45 H 0.040 0.960 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.884 -22.256 2.570 22.589 hybrid contribution 0.250 1.088 0.273 1.149 sum 3.133 -21.168 2.843 21.587 Atomic orbital electron populations 1.70043 1.07234 1.27011 1.51305 1.25722 0.95602 1.02329 0.94901 0.85697 0.78399 0.79214 0.78838 1.19713 1.21237 1.19510 1.21512 0.93065 0.92103 1.50621 0.92778 1.18556 0.92976 0.91409 0.93509 0.99002 1.21444 0.99091 0.95971 0.97545 1.21562 0.97622 0.95258 1.00381 1.21958 0.95072 0.98449 0.90087 1.61847 1.24437 1.01493 1.38748 1.20491 0.92198 0.85406 1.01983 1.19643 1.06807 0.93887 0.88274 1.41572 1.41652 1.17226 1.11877 0.72512 1.22798 0.94058 0.93579 0.92402 1.19684 1.14210 0.99188 0.93949 1.19996 0.75203 0.79255 0.85656 1.90884 1.57331 1.73090 1.22883 1.84509 1.69462 1.29811 1.48796 1.19401 1.00883 0.93822 0.93439 1.20015 0.98623 1.00678 0.91004 1.22622 1.02553 0.96476 0.96288 1.23032 0.92772 1.01039 1.03543 1.21950 0.95195 0.88250 0.98826 0.93204 0.92732 0.95550 0.94017 0.91483 0.90458 0.94849 0.92887 0.88838 0.76302 0.71291 0.89751 0.89924 0.89575 0.88701 0.88246 0.96006 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.78 11.35 21.45 0.24 -53.53 16 2 C 0.01 0.73 5.30 84.65 0.45 1.18 16 3 Si 0.95 43.75 29.54 68.60 2.03 45.77 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 7 C -0.53 -29.42 8.56 25.60 0.22 -29.20 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 9 C 0.05 2.74 2.27 -11.48 -0.03 2.72 16 10 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 11 C -0.10 -4.86 5.02 30.68 0.15 -4.71 16 12 C -0.11 -4.23 6.09 30.65 0.19 -4.04 16 13 C 0.07 2.26 5.31 86.33 0.46 2.72 16 14 N -0.54 -18.27 4.65 -900.92 -4.19 -22.46 16 15 C 0.13 3.28 5.20 85.56 0.44 3.73 16 16 C 0.02 0.55 5.51 40.97 0.23 0.77 16 17 N -0.53 -8.22 5.56 -182.03 -1.01 -9.23 16 18 H 0.43 3.85 8.96 -92.70 -0.83 3.02 16 19 C 0.11 1.73 11.80 84.17 0.99 2.72 16 20 C -0.26 -6.32 6.30 -18.82 -0.12 -6.44 16 21 C 0.55 13.65 8.29 70.15 0.58 14.23 16 22 O -0.55 -17.27 14.74 19.69 0.29 -16.98 16 23 O -0.51 -8.18 13.29 -56.99 -0.76 -8.94 16 24 C -0.07 -1.93 5.76 -18.51 -0.11 -2.04 16 25 C -0.08 -2.60 5.47 -11.54 -0.06 -2.66 16 26 C -0.14 -4.01 8.29 30.62 0.25 -3.76 16 27 C -0.17 -4.40 9.30 30.62 0.28 -4.12 16 28 C 0.09 3.44 4.68 86.33 0.40 3.84 16 29 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 30 H 0.05 2.98 6.15 -2.39 -0.01 2.97 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.08 2.09 6.84 -2.39 -0.02 2.07 16 35 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.05 1.15 8.12 -2.39 -0.02 1.13 16 37 H 0.09 2.47 6.86 -2.38 -0.02 2.45 16 38 H 0.22 1.54 8.06 -2.91 -0.02 1.52 16 39 H 0.43 3.26 9.11 -74.06 -0.67 2.58 16 40 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 41 H 0.08 2.36 7.59 -2.39 -0.02 2.34 16 42 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 43 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 44 H 0.10 2.36 8.01 -2.39 -0.02 2.34 16 45 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.06 2.39 8.01 -2.39 -0.02 2.37 16 Total: -1.00 -72.13 370.66 0.45 -71.69 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -0.50 Total: 18.75 kcal Atomic # 6 Polarization: -29.40 SS G_CDS: 4.34 Total: -25.06 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -4.95 Total: -85.23 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.47 Total: -25.92 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -72.13 0.45 -71.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064221.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.451 kcal (2) G-P(sol) polarization free energy of solvation -72.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds