Wall clock time and date at job start Tue Mar 31 2020 12:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99788 * 2 1 4 4 H 1.48496 * 109.47188 * 274.51432 * 3 2 1 5 5 H 1.48497 * 109.47432 * 34.52164 * 3 2 1 6 6 H 1.48503 * 109.47103 * 154.52184 * 3 2 1 7 7 C 1.37880 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00398 * 4.67390 * 7 2 1 9 9 C 1.50701 * 119.99671 * 184.66479 * 7 2 1 10 10 C 1.53001 * 115.54603 * 84.82285 * 9 7 2 11 11 N 1.46903 * 109.47181 * 65.12980 * 10 9 7 12 12 C 1.46898 * 111.00266 * 185.08676 * 11 10 9 13 13 C 1.50698 * 109.47456 * 174.93957 * 12 11 10 14 14 C 1.34443 * 125.37879 * 94.97810 * 13 12 11 15 15 C 1.46814 * 106.40722 * 180.02562 * 14 13 12 16 16 C 1.47107 * 127.05703 * 179.97438 * 15 14 13 17 17 O 1.21554 * 119.99893 * 179.97438 * 16 15 14 18 18 O 1.34788 * 120.00042 * 359.97438 * 16 15 14 19 19 C 1.37375 * 105.88243 * 359.97438 * 15 14 13 20 20 N 1.35172 * 108.51540 * 0.02985 * 19 15 14 21 21 C 1.47030 * 124.04976 * 179.97438 * 20 19 15 22 22 C 1.53131 * 108.90934 * 342.35804 * 21 20 19 23 23 C 1.53159 * 109.53521 * 51.04031 * 22 21 20 24 24 C 1.50971 * 126.87929 * 180.02562 * 19 15 14 25 25 C 1.53004 * 117.50202 * 230.48954 * 9 7 2 26 26 C 1.52996 * 117.50159 * 299.15305 * 9 7 2 27 27 H 0.96998 * 120.00182 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47076 * 305.13026 * 10 9 7 29 29 H 1.09005 * 109.47006 * 185.12858 * 10 9 7 30 30 H 1.00905 * 110.99984 * 61.13620 * 11 10 9 31 31 H 1.09003 * 109.46672 * 54.93798 * 12 11 10 32 32 H 1.09007 * 109.47315 * 294.94004 * 12 11 10 33 33 H 1.07999 * 126.79261 * 0.02562 * 14 13 12 34 34 H 0.96700 * 116.99610 * 180.02562 * 18 16 15 35 35 H 1.08996 * 109.56688 * 102.18797 * 21 20 19 36 36 H 1.08998 * 109.56669 * 222.42228 * 21 20 19 37 37 H 1.08997 * 109.46381 * 291.01485 * 22 21 20 38 38 H 1.09003 * 109.45721 * 171.05716 * 22 21 20 39 39 H 1.09003 * 109.54176 * 170.57773 * 23 22 21 40 40 H 1.09001 * 109.54316 * 50.31586 * 23 22 21 41 41 H 1.08996 * 109.70370 * 44.67768 * 24 19 15 42 42 H 1.08997 * 109.70924 * 284.05228 * 24 19 15 43 43 H 1.08997 * 117.49855 * 215.00535 * 25 9 7 44 44 H 1.09003 * 117.49216 * 0.02562 * 25 9 7 45 45 H 1.08996 * 117.50041 * 359.97438 * 26 9 7 46 46 H 1.09000 * 117.49464 * 144.97554 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4011 2.1015 -1.3957 5 1 1.4976 2.6232 0.7934 6 1 3.5912 1.4145 0.6023 7 6 2.0045 -1.1941 0.0005 8 1 1.4672 -2.1279 -0.0753 9 6 3.5078 -1.1962 0.1067 10 6 4.0689 -1.1280 1.5284 11 7 3.7005 -2.3478 2.2594 12 6 4.1185 -2.2657 3.6652 13 6 3.6163 -3.4755 4.4102 14 6 4.3187 -4.6002 4.6319 15 6 3.4369 -5.4975 5.3887 16 6 3.7513 -6.8520 5.8689 17 8 2.9192 -7.4856 6.4882 18 8 4.9620 -7.3904 5.6220 19 6 2.2580 -4.8125 5.5565 20 7 2.3768 -3.6024 4.9659 21 6 1.3106 -2.5903 4.9410 22 6 -0.0235 -3.2667 5.2687 23 6 0.1209 -4.0890 6.5527 24 6 1.0214 -5.2991 6.2730 25 6 4.2876 -2.0178 -0.9219 26 6 4.2950 -0.4890 -0.9982 27 1 -0.4850 0.8400 0.0004 28 1 3.6562 -0.2588 2.0406 29 1 5.1549 -1.0434 1.4867 30 1 4.0872 -3.1667 1.8144 31 1 3.7040 -1.3637 4.1154 32 1 5.2067 -2.2316 3.7193 33 1 5.3312 -4.8034 4.3157 34 1 5.1220 -8.2833 5.9571 35 1 1.5212 -1.8199 5.6827 36 1 1.2591 -2.1387 3.9503 37 1 -0.3092 -3.9234 4.4470 38 1 -0.7915 -2.5060 5.4091 39 1 -0.8610 -4.4328 6.8779 40 1 0.5694 -3.4727 7.3319 41 1 1.3038 -5.7718 7.2136 42 1 0.4911 -6.0155 5.6456 43 1 5.2003 -2.5097 -0.5857 44 1 3.7132 -2.5565 -1.6756 45 1 3.7258 -0.0225 -1.8022 46 1 5.2126 0.0252 -0.7122 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608178610.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:21 Heat of formation + Delta-G solvation = -26.219944 kcal Electronic energy + Delta-G solvation = -27079.370177 eV Core-core repulsion = 23355.887564 eV Total energy + Delta-G solvation = -3723.482613 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.60352 -39.54876 -37.48607 -36.15270 -35.84187 -34.51888 -32.48886 -32.02079 -29.80629 -28.60667 -26.52953 -25.46586 -23.97705 -23.68773 -22.81516 -21.59275 -20.67798 -20.38597 -18.96803 -18.22520 -17.84780 -16.89967 -16.19243 -15.77234 -15.25764 -15.19049 -15.06246 -14.55680 -14.30449 -14.25740 -13.99836 -13.98734 -13.53777 -13.35560 -13.27834 -12.92070 -12.68306 -12.25785 -12.08183 -11.75832 -11.57592 -11.47392 -11.40807 -11.09114 -11.05583 -10.93831 -10.83982 -10.66771 -10.48186 -10.36816 -10.12091 -9.52609 -9.07719 -8.57236 -8.53766 -8.43727 -8.02244 -7.75310 -6.05236 -4.04083 1.58256 2.42847 2.76607 3.28015 3.38126 3.39894 3.42136 3.47145 4.44824 4.50015 4.54454 4.64908 4.69359 4.77698 4.96101 5.10106 5.22024 5.23478 5.24971 5.35444 5.49088 5.57212 5.71007 5.72195 5.74277 5.76418 5.83590 5.88210 5.90428 5.99364 6.03375 6.12686 6.13930 6.17297 6.28978 6.39952 6.46021 6.60067 6.71420 6.84823 7.04841 7.15344 7.22294 7.30057 7.63612 7.76411 7.96056 8.12447 8.58767 9.00875 9.58533 11.07176 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015521 B = 0.003760 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.612808 B = 7444.222911 C = 8620.644780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.074 3.926 3 Si 0.875 3.125 4 H -0.283 1.283 5 H -0.297 1.297 6 H -0.259 1.259 7 C -0.460 4.460 8 H 0.077 0.923 9 C 0.010 3.990 10 C 0.102 3.898 11 N -0.663 5.663 12 C 0.123 3.877 13 C 0.035 3.965 14 C -0.147 4.147 15 C -0.238 4.238 16 C 0.561 3.439 17 O -0.538 6.538 18 O -0.515 6.515 19 C 0.125 3.875 20 N -0.414 5.414 21 C 0.097 3.903 22 C -0.136 4.136 23 C -0.127 4.127 24 C -0.056 4.056 25 C -0.184 4.184 26 C -0.202 4.202 27 H 0.261 0.739 28 H 0.066 0.934 29 H 0.004 0.996 30 H 0.340 0.660 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.146 0.854 34 H 0.406 0.594 35 H 0.080 0.920 36 H 0.115 0.885 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.313 -7.432 13.151 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.209 1.209 5 H -0.224 1.224 6 H -0.183 1.183 7 C -0.498 4.498 8 H 0.095 0.905 9 C 0.008 3.992 10 C -0.027 4.027 11 N -0.294 5.294 12 C -0.007 4.007 13 C -0.074 4.074 14 C -0.170 4.170 15 C -0.246 4.246 16 C 0.408 3.592 17 O -0.430 6.430 18 O -0.325 6.325 19 C 0.006 3.994 20 N -0.089 5.089 21 C -0.024 4.024 22 C -0.174 4.174 23 C -0.165 4.165 24 C -0.094 4.094 25 C -0.221 4.221 26 C -0.240 4.240 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.022 0.978 30 H 0.158 0.842 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.164 0.836 34 H 0.263 0.737 35 H 0.098 0.902 36 H 0.133 0.867 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.104 0.896 45 H 0.104 0.896 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.984 -6.531 13.244 15.585 hybrid contribution 1.563 0.326 -0.069 1.598 sum 6.547 -6.206 13.175 15.967 Atomic orbital electron populations 1.69909 1.06240 1.26659 1.51276 1.24929 0.94501 0.98685 0.94591 0.86921 0.80695 0.83876 0.78133 1.20886 1.22367 1.18284 1.20146 0.86422 0.94261 1.48921 0.90523 1.19412 0.94795 0.98865 0.86091 1.21702 0.94094 0.91697 0.95219 1.60193 1.64177 1.05350 0.99663 1.20385 0.97068 0.93421 0.89852 1.20145 0.85251 0.98764 1.03245 1.21737 0.99637 0.92208 1.03460 1.18960 0.96400 0.93794 1.15490 1.19849 0.78535 0.85559 0.75227 1.90841 1.48758 1.62864 1.40517 1.84614 1.35974 1.36607 1.75331 1.20478 0.95801 0.85544 0.97618 1.43873 1.11913 1.12723 1.40361 1.22250 0.85206 0.89538 1.05378 1.21882 0.96154 1.00658 0.98662 1.21729 1.00436 0.96699 0.97610 1.20514 0.90781 0.97527 1.00557 1.22810 1.01324 0.92849 1.05111 1.22992 1.01713 0.94786 1.04518 0.92888 0.91560 0.97754 0.84177 0.90622 0.93639 0.83591 0.73689 0.90202 0.86656 0.90249 0.89282 0.90430 0.91479 0.88673 0.89307 0.91371 0.89637 0.89586 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.60 13.96 55.43 0.77 -25.83 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 20.91 24.95 -169.99 -4.24 16.67 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.30 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.26 -5.77 5.69 56.52 0.32 -5.45 16 7 C -0.46 -12.24 9.33 -34.44 -0.32 -12.57 16 8 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 9 C 0.01 0.21 0.97 -155.66 -0.15 0.06 16 10 C 0.10 1.95 5.12 -3.82 -0.02 1.93 16 11 N -0.66 -11.58 6.34 -115.05 -0.73 -12.31 16 12 C 0.12 1.77 5.81 -4.98 -0.03 1.75 16 13 C 0.03 0.51 6.42 -81.89 -0.53 -0.02 16 14 C -0.15 -2.10 10.89 -37.46 -0.41 -2.51 16 15 C -0.24 -3.54 6.32 -103.15 -0.65 -4.20 16 16 C 0.56 7.95 8.32 34.33 0.29 8.23 16 17 O -0.54 -8.43 16.19 -19.31 -0.31 -8.75 16 18 O -0.51 -5.76 13.33 -40.73 -0.54 -6.30 16 19 C 0.13 1.78 6.60 -81.30 -0.54 1.25 16 20 N -0.41 -5.89 3.11 -107.11 -0.33 -6.23 16 21 C 0.10 1.24 6.43 -3.69 -0.02 1.22 16 22 C -0.14 -1.50 5.92 -26.58 -0.16 -1.66 16 23 C -0.13 -1.24 5.98 -26.44 -0.16 -1.39 16 24 C -0.06 -0.66 5.35 -27.54 -0.15 -0.81 16 25 C -0.18 -3.59 9.96 -26.69 -0.27 -3.85 16 26 C -0.20 -4.15 7.32 -26.69 -0.20 -4.35 16 27 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 28 H 0.07 1.35 7.00 -51.93 -0.36 0.99 16 29 H 0.00 0.08 8.09 -51.93 -0.42 -0.34 16 30 H 0.34 5.79 8.83 -39.29 -0.35 5.44 16 31 H 0.08 1.09 7.91 -51.93 -0.41 0.68 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.15 1.87 8.06 -52.49 -0.42 1.44 16 34 H 0.41 2.52 9.11 45.56 0.42 2.94 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.12 1.80 8.12 -51.93 -0.42 1.38 16 37 H 0.08 0.98 8.11 -51.93 -0.42 0.56 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 41 H 0.09 1.13 7.44 -51.93 -0.39 0.74 16 42 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 45 H 0.09 1.87 7.14 -51.93 -0.37 1.50 16 46 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 373.43 15.07 5.63 5.63 Total: -1.00 -31.78 373.43 -9.75 -41.53 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -6.59 Total: 10.57 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -3.40 Total: -14.99 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: -0.29 Total: -44.36 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.86 Total: -15.05 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.24 Total: 16.67 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.78 -9.75 -41.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608178610.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.307 kcal (2) G-P(sol) polarization free energy of solvation -31.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds