Wall clock time and date at job start Tue Mar 31 2020 12:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99921 * 2 1 4 4 H 1.48505 * 109.46668 * 269.99266 * 3 2 1 5 5 H 1.48489 * 109.47430 * 29.99837 * 3 2 1 6 6 H 1.48506 * 109.46855 * 150.00168 * 3 2 1 7 7 C 1.37874 * 119.99603 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99723 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00353 * 0.02562 * 7 2 1 10 10 C 1.53119 * 109.52348 * 179.97438 * 9 7 2 11 11 C 1.53030 * 109.27716 * 182.37582 * 10 9 7 12 12 N 1.46849 * 109.52127 * 59.18401 * 11 10 9 13 13 C 1.46909 * 110.99913 * 174.15993 * 12 11 10 14 14 C 1.50708 * 109.47060 * 170.00283 * 13 12 11 15 15 N 1.36424 * 125.45405 * 260.02366 * 14 13 12 16 16 H 0.97005 * 124.80824 * 0.02562 * 15 14 13 17 17 C 1.34629 * 110.38120 * 179.97438 * 15 14 13 18 18 C 1.37842 * 108.20644 * 359.97438 * 17 15 14 19 19 C 1.47103 * 127.02453 * 179.97438 * 18 17 15 20 20 O 1.21561 * 120.00004 * 174.45471 * 19 18 17 21 21 O 1.34785 * 120.00209 * 354.45504 * 19 18 17 22 22 C 1.34437 * 125.45609 * 80.29092 * 14 13 12 23 23 C 1.50691 * 126.81650 * 359.97438 * 22 14 13 24 24 C 1.53003 * 117.49883 * 131.43000 * 23 22 14 25 25 C 1.53006 * 117.49900 * 62.77236 * 23 22 14 26 26 C 1.46846 * 111.19955 * 298.25251 * 12 11 10 27 27 C 1.53035 * 109.51864 * 61.74541 * 26 12 11 28 28 H 0.97000 * 119.99737 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.52451 * 300.12850 * 9 7 2 30 30 H 1.09002 * 109.50082 * 62.44201 * 10 9 7 31 31 H 1.08994 * 109.53605 * 302.34381 * 10 9 7 32 32 H 1.09001 * 109.46832 * 299.17061 * 11 10 9 33 33 H 1.08996 * 109.45652 * 179.19359 * 11 10 9 34 34 H 1.08997 * 109.47159 * 50.00046 * 13 12 11 35 35 H 1.08999 * 109.46959 * 289.99548 * 13 12 11 36 36 H 1.07994 * 125.89464 * 179.97438 * 17 15 14 37 37 H 0.96698 * 117.00047 * 179.97438 * 21 19 18 38 38 H 1.08999 * 115.55777 * 277.10378 * 23 22 14 39 39 H 1.09001 * 117.49825 * 0.02562 * 24 23 22 40 40 H 1.09001 * 117.49643 * 145.01971 * 24 23 22 41 41 H 1.08997 * 117.49818 * 214.97597 * 25 23 22 42 42 H 1.09006 * 117.49643 * 359.97438 * 25 23 22 43 43 H 1.09004 * 109.46249 * 181.75057 * 26 12 11 44 44 H 1.08997 * 109.46762 * 301.72851 * 26 12 11 45 45 H 1.09005 * 109.50235 * 180.87976 * 27 26 12 46 46 H 1.09002 * 109.54177 * 60.77738 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2449 -3.6639 0.0005 11 6 1.4750 -4.9851 -0.0593 12 7 0.6532 -5.0195 -1.2759 13 6 0.0068 -6.3287 -1.4377 14 6 -1.0111 -6.2528 -2.5466 15 7 -2.3570 -6.1088 -2.3767 16 1 -2.8025 -6.0395 -1.5178 17 6 -2.9793 -6.0755 -3.5701 18 6 -2.0250 -6.1997 -4.5570 19 6 -2.2506 -6.2146 -6.0106 20 8 -1.3036 -6.2298 -6.7726 21 8 -3.5074 -6.2114 -6.4976 22 6 -0.7386 -6.3211 -3.8613 23 6 0.6188 -6.4847 -4.4948 24 6 0.7692 -7.5568 -5.5760 25 6 1.3888 -7.7720 -4.1930 26 6 -0.3405 -3.9384 -1.2762 27 6 0.3752 -2.5859 -1.2526 28 1 -0.4850 0.8401 -0.0004 29 1 0.6219 -2.5566 0.8888 30 1 2.8427 -3.6321 0.9115 31 1 2.8995 -3.5844 -0.8673 32 1 0.8313 -5.0705 0.8162 33 1 2.1803 -5.8160 -0.0739 34 1 -0.4891 -6.6065 -0.5077 35 1 0.7592 -7.0772 -1.6860 36 1 -4.0425 -5.9698 -3.7271 37 1 -3.6055 -6.2213 -7.4595 38 1 1.1970 -5.5681 -4.6113 39 1 -0.1139 -8.1435 -5.8293 40 1 1.4465 -7.3455 -6.4035 41 1 2.4735 -7.7022 -4.1112 42 1 0.9136 -8.5003 -3.5357 43 1 -0.9538 -4.0090 -2.1745 44 1 -0.9757 -4.0285 -0.3949 45 1 -0.3628 -1.7838 -1.2370 46 1 0.9999 -2.4885 -2.1405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181584.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:26 Heat of formation + Delta-G solvation = -23.592234 kcal Electronic energy + Delta-G solvation = -27428.268677 eV Core-core repulsion = 23704.900010 eV Total energy + Delta-G solvation = -3723.368667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.49584 -39.52803 -38.06310 -36.82797 -35.75245 -34.09304 -31.77496 -30.94265 -29.82079 -29.50682 -26.47926 -24.58920 -23.74526 -22.69370 -22.14932 -22.06417 -21.30265 -20.11148 -18.72087 -18.45575 -17.69720 -17.32735 -16.40254 -15.85667 -15.78227 -15.26267 -15.17218 -14.49289 -14.35383 -14.23189 -13.99117 -13.66301 -13.21282 -12.97609 -12.78127 -12.68130 -12.32558 -11.82461 -11.75573 -11.55149 -11.43214 -11.38361 -11.21870 -10.93563 -10.75747 -10.60820 -10.46186 -10.23218 -10.20043 -9.97929 -9.76066 -9.43293 -8.97030 -8.75825 -8.69754 -8.28639 -8.19005 -7.73051 -5.96852 -4.01751 1.51051 2.29343 2.97689 3.32349 3.32533 3.34822 3.39007 3.42151 4.07687 4.45736 4.50988 4.80291 4.85384 4.94686 5.13264 5.25995 5.28643 5.33811 5.39167 5.68308 5.70026 5.77760 5.83566 5.85786 5.93018 6.04222 6.09131 6.14269 6.16068 6.30796 6.36032 6.50364 6.57814 6.60231 6.62274 6.71624 6.84706 6.90728 7.07672 7.16046 7.31765 7.43929 7.60008 7.66591 7.82888 8.05447 8.11024 8.16127 8.49274 9.01892 9.62760 11.09415 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015264 B = 0.003503 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.930083 B = 7991.271499 C = 8501.903001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.106 4.106 11 C 0.061 3.939 12 N -0.524 5.524 13 C 0.123 3.877 14 C 0.026 3.974 15 N -0.541 5.541 16 H 0.418 0.582 17 C 0.078 3.922 18 C -0.224 4.224 19 C 0.551 3.449 20 O -0.512 6.512 21 O -0.524 6.524 22 C -0.050 4.050 23 C -0.068 4.068 24 C -0.149 4.149 25 C -0.180 4.180 26 C 0.058 3.942 27 C -0.103 4.103 28 H 0.258 0.742 29 H 0.019 0.981 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.023 0.977 33 H 0.059 0.941 34 H 0.031 0.969 35 H 0.094 0.906 36 H 0.180 0.820 37 H 0.408 0.592 38 H 0.115 0.885 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.059 0.941 44 H 0.014 0.986 45 H 0.090 0.910 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.943 -16.684 -6.805 19.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.548 4.548 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.143 4.143 11 C -0.066 4.066 12 N -0.249 5.249 13 C -0.005 4.005 14 C -0.082 4.082 15 N -0.135 5.135 16 H 0.255 0.745 17 C -0.060 4.060 18 C -0.232 4.232 19 C 0.397 3.603 20 O -0.401 6.401 21 O -0.336 6.336 22 C -0.056 4.056 23 C -0.086 4.086 24 C -0.186 4.186 25 C -0.217 4.217 26 C -0.069 4.069 27 C -0.141 4.141 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.112 0.888 36 H 0.197 0.803 37 H 0.265 0.735 38 H 0.133 0.867 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.105 0.895 43 H 0.077 0.923 44 H 0.033 0.967 45 H 0.109 0.891 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.485 -16.478 -6.813 18.973 hybrid contribution -0.636 0.979 0.432 1.245 sum -7.121 -15.499 -6.380 18.211 Atomic orbital electron populations 1.69877 1.05891 1.26249 1.51241 1.24959 0.94824 0.99001 0.95188 0.86641 0.79885 0.83650 0.78105 1.20695 1.21367 1.19973 1.21214 0.92901 0.90674 1.49974 0.92741 1.18679 0.92683 0.91799 0.93847 1.21668 0.98708 0.93578 1.00395 1.22134 0.95790 0.99575 0.89150 1.62150 1.23325 1.01100 1.38337 1.20632 0.93387 0.94059 0.92461 1.19819 0.82946 1.09882 0.95587 1.41627 1.07056 1.56252 1.08573 0.74466 1.22273 0.98226 1.01811 0.83682 1.19494 0.93793 1.21332 0.88623 1.19897 0.79807 0.72142 0.88484 1.90897 1.42910 1.46767 1.59491 1.84575 1.31712 1.86725 1.30614 1.19271 0.91739 1.04498 0.90056 1.20102 0.92652 0.94042 1.01854 1.22725 1.02081 1.02087 0.91680 1.23004 0.99382 0.99608 0.99684 1.22303 0.93172 0.93246 0.98192 1.21640 1.00161 0.92849 0.99429 0.93168 0.96332 0.93159 0.92319 0.95918 0.92218 0.95134 0.88786 0.80286 0.73463 0.86747 0.89635 0.89189 0.88837 0.89469 0.92284 0.96738 0.89147 0.93746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 11.37 55.43 0.63 -24.79 16 2 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -13.97 8.56 -34.44 -0.29 -14.26 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 9 C 0.05 1.19 2.16 -91.65 -0.20 0.99 16 10 C -0.11 -2.17 5.32 -26.65 -0.14 -2.31 16 11 C 0.06 1.04 5.42 -3.84 -0.02 1.02 16 12 N -0.52 -8.83 4.80 -236.11 -1.13 -9.97 16 13 C 0.12 1.65 5.51 -4.97 -0.03 1.62 16 14 C 0.03 0.35 4.52 -81.89 -0.37 -0.02 16 15 N -0.54 -5.79 5.64 -8.88 -0.05 -5.84 16 16 H 0.42 3.41 8.96 -40.82 -0.37 3.04 16 17 C 0.08 0.84 11.80 -16.47 -0.19 0.64 16 18 C -0.22 -3.03 6.30 -103.01 -0.65 -3.68 16 19 C 0.55 7.40 8.30 34.33 0.28 7.69 16 20 O -0.51 -8.10 14.77 -19.31 -0.29 -8.39 16 21 O -0.52 -5.14 13.29 -40.72 -0.54 -5.68 16 22 C -0.05 -0.72 5.76 -102.53 -0.59 -1.31 16 23 C -0.07 -0.98 5.47 -91.77 -0.50 -1.48 16 24 C -0.15 -1.95 8.30 -26.69 -0.22 -2.18 16 25 C -0.18 -2.16 9.31 -26.69 -0.25 -2.41 16 26 C 0.06 1.11 5.08 -3.84 -0.02 1.09 16 27 C -0.10 -2.42 5.12 -26.65 -0.14 -2.55 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 34 H 0.03 0.38 8.08 -51.93 -0.42 -0.04 16 35 H 0.09 1.18 7.04 -51.93 -0.37 0.82 16 36 H 0.18 1.34 8.06 -52.49 -0.42 0.91 16 37 H 0.41 2.21 9.11 45.56 0.42 2.63 16 38 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 39 H 0.09 1.17 7.60 -51.93 -0.39 0.78 16 40 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.09 0.98 8.03 -51.93 -0.42 0.57 16 43 H 0.06 1.11 6.30 -51.93 -0.33 0.78 16 44 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 45 H 0.09 2.39 6.18 -51.93 -0.32 2.07 16 46 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 369.77 15.07 5.57 5.57 Total: -1.00 -32.06 369.77 -10.64 -42.70 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.39 Total: 5.58 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -3.42 Total: -15.56 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: -0.55 Total: -40.60 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.83 Total: -14.07 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.06 -10.64 -42.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181584.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.108 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds