Wall clock time and date at job start Tue Mar 31 2020 12:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99921 * 2 1 4 4 H 1.48505 * 109.46668 * 269.99266 * 3 2 1 5 5 H 1.48489 * 109.47430 * 29.99837 * 3 2 1 6 6 H 1.48506 * 109.46855 * 150.00168 * 3 2 1 7 7 C 1.37874 * 119.99603 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99723 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00353 * 0.02562 * 7 2 1 10 10 C 1.53119 * 109.52348 * 179.97438 * 9 7 2 11 11 C 1.53030 * 109.27716 * 182.37582 * 10 9 7 12 12 N 1.46849 * 109.52127 * 59.18401 * 11 10 9 13 13 C 1.46909 * 110.99913 * 174.15993 * 12 11 10 14 14 C 1.50708 * 109.47060 * 170.00283 * 13 12 11 15 15 N 1.36424 * 125.45405 * 260.02366 * 14 13 12 16 16 H 0.97005 * 124.80824 * 0.02562 * 15 14 13 17 17 C 1.34629 * 110.38120 * 179.97438 * 15 14 13 18 18 C 1.37842 * 108.20644 * 359.97438 * 17 15 14 19 19 C 1.47103 * 127.02453 * 179.97438 * 18 17 15 20 20 O 1.21561 * 120.00004 * 174.45471 * 19 18 17 21 21 O 1.34785 * 120.00209 * 354.45504 * 19 18 17 22 22 C 1.34437 * 125.45609 * 80.29092 * 14 13 12 23 23 C 1.50691 * 126.81650 * 359.97438 * 22 14 13 24 24 C 1.53003 * 117.49883 * 131.43000 * 23 22 14 25 25 C 1.53006 * 117.49900 * 62.77236 * 23 22 14 26 26 C 1.46846 * 111.19955 * 298.25251 * 12 11 10 27 27 C 1.53035 * 109.51864 * 61.74541 * 26 12 11 28 28 H 0.97000 * 119.99737 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.52451 * 300.12850 * 9 7 2 30 30 H 1.09002 * 109.50082 * 62.44201 * 10 9 7 31 31 H 1.08994 * 109.53605 * 302.34381 * 10 9 7 32 32 H 1.09001 * 109.46832 * 299.17061 * 11 10 9 33 33 H 1.08996 * 109.45652 * 179.19359 * 11 10 9 34 34 H 1.08997 * 109.47159 * 50.00046 * 13 12 11 35 35 H 1.08999 * 109.46959 * 289.99548 * 13 12 11 36 36 H 1.07994 * 125.89464 * 179.97438 * 17 15 14 37 37 H 0.96698 * 117.00047 * 179.97438 * 21 19 18 38 38 H 1.08999 * 115.55777 * 277.10378 * 23 22 14 39 39 H 1.09001 * 117.49825 * 0.02562 * 24 23 22 40 40 H 1.09001 * 117.49643 * 145.01971 * 24 23 22 41 41 H 1.08997 * 117.49818 * 214.97597 * 25 23 22 42 42 H 1.09006 * 117.49643 * 359.97438 * 25 23 22 43 43 H 1.09004 * 109.46249 * 181.75057 * 26 12 11 44 44 H 1.08997 * 109.46762 * 301.72851 * 26 12 11 45 45 H 1.09005 * 109.50235 * 180.87976 * 27 26 12 46 46 H 1.09002 * 109.54177 * 60.77738 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2449 -3.6639 0.0005 11 6 1.4750 -4.9851 -0.0593 12 7 0.6532 -5.0195 -1.2759 13 6 0.0068 -6.3287 -1.4377 14 6 -1.0111 -6.2528 -2.5466 15 7 -2.3570 -6.1088 -2.3767 16 1 -2.8025 -6.0395 -1.5178 17 6 -2.9793 -6.0755 -3.5701 18 6 -2.0250 -6.1997 -4.5570 19 6 -2.2506 -6.2146 -6.0106 20 8 -1.3036 -6.2298 -6.7726 21 8 -3.5074 -6.2114 -6.4976 22 6 -0.7386 -6.3211 -3.8613 23 6 0.6188 -6.4847 -4.4948 24 6 0.7692 -7.5568 -5.5760 25 6 1.3888 -7.7720 -4.1930 26 6 -0.3405 -3.9384 -1.2762 27 6 0.3752 -2.5859 -1.2526 28 1 -0.4850 0.8401 -0.0004 29 1 0.6219 -2.5566 0.8888 30 1 2.8427 -3.6321 0.9115 31 1 2.8995 -3.5844 -0.8673 32 1 0.8313 -5.0705 0.8162 33 1 2.1803 -5.8160 -0.0739 34 1 -0.4891 -6.6065 -0.5077 35 1 0.7592 -7.0772 -1.6860 36 1 -4.0425 -5.9698 -3.7271 37 1 -3.6055 -6.2213 -7.4595 38 1 1.1970 -5.5681 -4.6113 39 1 -0.1139 -8.1435 -5.8293 40 1 1.4465 -7.3455 -6.4035 41 1 2.4735 -7.7022 -4.1112 42 1 0.9136 -8.5003 -3.5357 43 1 -0.9538 -4.0090 -2.1745 44 1 -0.9757 -4.0285 -0.3949 45 1 -0.3628 -1.7838 -1.2370 46 1 0.9999 -2.4885 -2.1405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608181584.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:24 Heat of formation + Delta-G solvation = -44.281198 kcal Electronic energy + Delta-G solvation = -27429.165818 eV Core-core repulsion = 23704.900010 eV Total energy + Delta-G solvation = -3724.265808 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.43850 -40.49696 -39.55038 -37.82489 -36.68785 -35.83689 -33.53116 -31.89228 -31.44771 -30.79203 -28.02300 -26.07459 -24.80625 -23.85305 -23.62559 -23.18872 -22.78162 -21.02171 -20.34005 -19.57350 -18.64524 -18.46766 -18.22623 -17.11279 -16.71039 -16.58789 -16.24559 -16.18299 -15.70984 -15.32551 -15.12372 -14.82027 -14.68782 -14.39855 -14.23785 -14.01768 -13.77602 -13.17194 -13.07531 -12.95159 -12.83454 -12.56857 -12.54399 -12.40176 -12.23536 -12.18475 -11.99381 -11.85045 -11.63533 -11.34691 -11.22084 -10.79565 -10.77474 -10.64616 -10.36952 -9.70006 -9.25989 -8.96847 -8.08358 -6.20778 0.59273 1.28666 1.39653 1.41167 1.50479 2.14295 2.36992 2.43436 2.48919 3.06995 3.17845 3.21511 3.83586 3.91850 4.04420 4.12580 4.23150 4.25706 4.34015 4.35580 4.42045 4.48404 4.55911 4.77277 4.80595 4.84426 4.89723 4.92351 4.95059 5.01017 5.11185 5.14771 5.16276 5.25377 5.36016 5.38346 5.40166 5.58905 5.63314 5.72475 5.77925 5.94305 6.02636 6.04018 6.31184 6.35106 6.42265 6.55515 6.91056 7.24782 7.46866 8.96039 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015264 B = 0.003503 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.930083 B = 7991.271499 C = 8501.903001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.949 3.051 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.533 4.533 8 H 0.049 0.951 9 C 0.046 3.954 10 C -0.100 4.100 11 C 0.068 3.932 12 N -0.534 5.534 13 C 0.127 3.873 14 C 0.016 3.984 15 N -0.532 5.532 16 H 0.432 0.568 17 C 0.106 3.894 18 C -0.262 4.262 19 C 0.552 3.448 20 O -0.548 6.548 21 O -0.513 6.513 22 C -0.069 4.069 23 C -0.087 4.087 24 C -0.147 4.147 25 C -0.157 4.157 26 C 0.078 3.922 27 C -0.093 4.093 28 H 0.259 0.741 29 H -0.009 1.009 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.027 0.973 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.108 0.892 36 H 0.216 0.784 37 H 0.427 0.573 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.062 0.938 44 H 0.016 0.984 45 H 0.057 0.943 46 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.640 -18.225 -6.217 20.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.775 3.225 4 H -0.205 1.205 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.571 4.571 8 H 0.068 0.932 9 C 0.028 3.972 10 C -0.138 4.138 11 C -0.060 4.060 12 N -0.259 5.259 13 C 0.000 4.000 14 C -0.093 4.093 15 N -0.127 5.127 16 H 0.272 0.728 17 C -0.034 4.034 18 C -0.271 4.271 19 C 0.399 3.601 20 O -0.440 6.440 21 O -0.327 6.327 22 C -0.075 4.075 23 C -0.105 4.105 24 C -0.184 4.184 25 C -0.194 4.194 26 C -0.049 4.049 27 C -0.132 4.132 28 H 0.068 0.932 29 H 0.009 0.991 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.126 0.874 36 H 0.233 0.767 37 H 0.287 0.713 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.081 0.919 44 H 0.034 0.966 45 H 0.075 0.925 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -7.201 -18.034 -6.214 20.389 hybrid contribution -0.478 1.472 0.207 1.562 sum -7.679 -16.562 -6.006 19.218 Atomic orbital electron populations 1.70007 1.07066 1.26916 1.51733 1.25700 0.95661 1.02199 0.94935 0.85692 0.78912 0.79792 0.78092 1.20491 1.20818 1.19244 1.21620 0.92988 0.92438 1.50058 0.93248 1.18644 0.93151 0.92599 0.92851 1.21532 0.97959 0.94150 1.00126 1.22056 0.96165 0.98328 0.89404 1.62034 1.23231 1.02259 1.38387 1.20653 0.93932 0.91961 0.93483 1.19743 0.83964 1.10519 0.95060 1.41643 1.06318 1.55330 1.09404 0.72776 1.22784 0.99287 0.98536 0.82769 1.19728 0.94395 1.23581 0.89348 1.19981 0.80205 0.71368 0.88528 1.90877 1.44127 1.48683 1.60300 1.84516 1.29673 1.86003 1.32478 1.19446 0.92012 1.05115 0.90916 1.20013 0.93330 0.93753 1.03446 1.22629 1.01949 1.01713 0.92139 1.23054 0.99758 0.98006 0.98612 1.21926 0.92999 0.91658 0.98365 1.21388 0.99033 0.94886 0.97891 0.93192 0.99091 0.92706 0.93362 0.95437 0.88906 0.93012 0.87448 0.76744 0.71266 0.89484 0.90308 0.89492 0.87867 0.88169 0.91942 0.96576 0.92500 0.96023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.44 11.37 21.45 0.24 -53.20 16 2 C 0.01 0.75 5.31 84.65 0.45 1.20 16 3 Si 0.95 44.40 29.54 68.60 2.03 46.43 16 4 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.53 -29.91 8.56 25.60 0.22 -29.70 16 8 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 9 C 0.05 2.32 2.16 -11.46 -0.02 2.29 16 10 C -0.10 -4.06 5.32 30.64 0.16 -3.90 16 11 C 0.07 2.16 5.42 86.32 0.47 2.63 16 12 N -0.53 -17.12 4.80 -900.91 -4.32 -21.44 16 13 C 0.13 3.05 5.51 85.56 0.47 3.52 16 14 C 0.02 0.39 4.52 40.98 0.19 0.58 16 15 N -0.53 -9.88 5.64 -182.02 -1.03 -10.90 16 16 H 0.43 5.58 8.96 -92.70 -0.83 4.75 16 17 C 0.11 1.97 11.80 84.17 0.99 2.96 16 18 C -0.26 -6.77 6.30 -18.82 -0.12 -6.89 16 19 C 0.55 14.47 8.30 70.15 0.58 15.05 16 20 O -0.55 -17.60 14.77 19.64 0.29 -17.31 16 21 O -0.51 -9.16 13.29 -56.97 -0.76 -9.92 16 22 C -0.07 -1.92 5.76 -18.51 -0.11 -2.03 16 23 C -0.09 -2.50 5.47 -11.54 -0.06 -2.56 16 24 C -0.15 -3.87 8.30 30.62 0.25 -3.61 16 25 C -0.16 -3.57 9.31 30.62 0.28 -3.28 16 26 C 0.08 2.95 5.08 86.33 0.44 3.38 16 27 C -0.09 -4.54 5.12 30.65 0.16 -4.38 16 28 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 29 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 30 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.03 0.86 8.14 -2.39 -0.02 0.85 16 33 H 0.09 2.40 8.12 -2.39 -0.02 2.38 16 34 H 0.05 1.06 8.08 -2.39 -0.02 1.04 16 35 H 0.11 2.32 7.04 -2.39 -0.02 2.31 16 36 H 0.22 2.32 8.06 -2.91 -0.02 2.29 16 37 H 0.43 3.93 9.11 -74.06 -0.67 3.26 16 38 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 39 H 0.08 2.17 7.60 -2.39 -0.02 2.15 16 40 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.10 2.01 8.03 -2.38 -0.02 1.99 16 43 H 0.06 2.30 6.30 -2.38 -0.02 2.29 16 44 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.06 3.12 6.18 -2.38 -0.01 3.11 16 46 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -71.91 369.77 0.31 -71.60 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -0.50 Total: 19.49 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: 4.35 Total: -24.74 kcal Atomic # 7 Polarization: -80.44 SS G_CDS: -5.11 Total: -85.54 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.47 Total: -27.23 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -71.91 0.31 -71.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181584.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.321 kcal (2) G-P(sol) polarization free energy of solvation -71.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds