Wall clock time and date at job start Tue Mar 31 2020 12:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37986 * 120.05058 * 2 1 4 4 C 1.38297 * 120.17154 * 180.31848 * 3 2 1 5 5 C 1.38588 * 120.26710 * 359.67394 * 4 3 2 6 6 F 1.35104 * 119.95722 * 180.02562 * 5 4 3 7 7 C 1.38171 * 120.09546 * 0.02562 * 5 4 3 8 8 C 1.39550 * 120.04627 * 179.71174 * 2 1 3 9 9 C 1.47858 * 120.13283 * 359.97438 * 8 2 1 10 10 N 1.31259 * 126.47152 * 310.99863 * 9 8 2 11 11 N 1.28510 * 109.93567 * 179.97438 * 10 9 8 12 12 C 1.31376 * 110.08156 * 0.02562 * 11 10 9 13 13 N 1.38404 * 126.37620 * 180.02562 * 12 11 10 14 14 C 1.46905 * 110.99510 * 306.66835 * 13 12 11 15 15 C 1.46904 * 111.00081 * 70.61497 * 13 12 11 16 16 H 1.09004 * 109.46573 * 55.00583 * 15 13 12 17 17 C 1.52993 * 109.47087 * 295.00482 * 15 13 12 18 18 C 1.50700 * 109.46895 * 175.00424 * 15 13 12 19 19 H 1.08000 * 119.99793 * 0.02562 * 18 15 13 20 20 C 1.37876 * 119.99861 * 180.02562 * 18 15 13 21 21 N 1.31518 * 119.99912 * 359.97438 * 20 18 15 22 22 Si 1.86799 * 119.99940 * 180.02562 * 20 18 15 23 23 H 1.48499 * 109.47310 * 59.99807 * 22 20 18 24 24 H 1.48502 * 109.47095 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47036 * 299.99609 * 22 20 18 26 26 N 1.36475 * 107.25771 * 359.97438 * 12 11 10 27 27 C 1.46496 * 127.16399 * 179.74003 * 26 12 11 28 28 H 1.08999 * 109.47412 * 270.28556 * 1 2 3 29 29 H 1.09006 * 109.47166 * 30.28468 * 1 2 3 30 30 H 1.09002 * 109.46916 * 150.28071 * 1 2 3 31 31 H 1.07998 * 119.91735 * 359.97438 * 3 2 1 32 32 H 1.08008 * 119.86428 * 179.69219 * 4 3 2 33 33 H 1.07996 * 120.09025 * 179.97438 * 7 5 4 34 34 H 1.08994 * 109.47285 * 54.80791 * 14 13 12 35 35 H 1.08996 * 109.46989 * 174.80731 * 14 13 12 36 36 H 1.09003 * 109.46732 * 294.80384 * 14 13 12 37 37 H 1.09000 * 109.47596 * 60.00537 * 17 15 13 38 38 H 1.09009 * 109.46587 * 179.97438 * 17 15 13 39 39 H 1.08997 * 109.47274 * 299.99906 * 17 15 13 40 40 H 0.96998 * 119.99729 * 180.02562 * 21 20 18 41 41 H 1.09000 * 109.47152 * 84.95844 * 27 26 12 42 42 H 1.09006 * 109.46934 * 204.95808 * 27 26 12 43 43 H 1.09001 * 109.47488 * 324.95678 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1944 0.0000 4 6 3.5809 1.1973 -0.0066 5 6 4.2820 0.0018 -0.0065 6 9 5.6330 0.0120 -0.0125 7 6 3.6013 -1.2005 -0.0003 8 6 2.2057 -1.2080 0.0061 9 6 1.4704 -2.4907 0.0131 10 7 0.4819 -2.8191 0.8119 11 7 0.0770 -4.0085 0.5419 12 6 0.7827 -4.5120 -0.4453 13 7 0.6306 -5.7684 -1.0056 14 6 0.6800 -6.8139 0.0252 15 6 -0.6145 -5.8520 -1.7808 16 1 -0.6335 -5.0553 -2.5245 17 6 -1.8118 -5.7007 -0.8404 18 6 -0.6858 -7.1881 -2.4740 19 1 0.1135 -7.9038 -2.3507 20 6 -1.7716 -7.4969 -3.2656 21 7 -2.7453 -6.6256 -3.4153 22 14 -1.8604 -9.1535 -4.1243 23 1 -1.8353 -10.2385 -3.1108 24 1 -3.1184 -9.2374 -4.9090 25 1 -0.6979 -9.3011 -5.0365 26 7 1.6929 -3.5653 -0.8164 27 6 2.7014 -3.6735 -1.8735 28 1 -0.3634 0.0051 1.0276 29 1 -0.3634 0.8875 -0.5183 30 1 -0.3633 -0.8925 -0.5095 31 1 1.6574 2.1294 -0.0004 32 1 4.1167 2.1351 -0.0116 33 1 4.1477 -2.1321 -0.0006 34 1 -0.0625 -6.6013 0.7943 35 1 0.4664 -7.7817 -0.4283 36 1 1.6730 -6.8344 0.4745 37 1 -1.7603 -4.7342 -0.3390 38 1 -2.7356 -5.7622 -1.4158 39 1 -1.7927 -6.4973 -0.0967 40 1 -3.5093 -6.8430 -3.9720 41 1 2.2542 -3.4062 -2.8309 42 1 3.5284 -2.9971 -1.6572 43 1 3.0719 -4.6976 -1.9188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646668236.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:21 Heat of formation + Delta-G solvation = 77.386698 kcal Electronic energy + Delta-G solvation = -26861.165628 eV Core-core repulsion = 23051.008182 eV Total energy + Delta-G solvation = -3810.157446 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.11793 -42.55693 -39.35889 -37.25250 -34.70935 -33.08628 -32.67638 -31.93368 -29.22074 -28.42360 -27.42341 -26.71955 -25.34756 -25.23117 -23.69487 -22.23288 -21.46415 -20.58743 -19.51398 -17.79255 -16.92405 -16.46831 -16.30714 -15.86691 -15.83238 -15.65645 -15.34464 -14.70348 -14.61237 -14.02769 -13.84260 -13.70913 -13.63256 -13.27416 -12.90548 -12.71697 -12.35591 -12.13217 -11.92237 -11.88950 -11.57389 -11.48024 -11.30911 -11.18372 -10.95765 -10.83589 -10.63014 -10.31772 -10.20772 -10.01700 -9.83212 -9.50162 -8.97142 -8.85122 -8.49415 -8.31171 -7.77893 -6.11533 -4.18210 0.64646 0.89387 2.08340 2.56188 3.11101 3.26388 3.31539 3.33094 3.36464 3.87710 4.22777 4.30164 4.50619 4.60904 4.63918 4.71406 4.80996 4.98118 5.20528 5.29274 5.36152 5.49641 5.53657 5.63406 5.67438 5.70019 5.72122 5.81887 5.92582 6.06079 6.18310 6.29224 6.32612 6.35167 6.54648 6.58701 6.78730 6.91574 7.00709 7.10560 7.45409 7.58399 7.69877 7.86225 8.20331 8.39448 8.84528 9.08532 9.46754 10.95163 Molecular weight = 318.16amu Principal moments of inertia in cm(-1) A = 0.022544 B = 0.003224 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.735506 B = 8683.761630 C = 9040.479481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.052 4.052 3 C -0.091 4.091 4 C -0.141 4.141 5 C 0.092 3.908 6 F -0.139 7.139 7 C -0.135 4.135 8 C 0.027 3.973 9 C 0.182 3.818 10 N -0.263 5.263 11 N -0.311 5.311 12 C 0.387 3.613 13 N -0.472 5.472 14 C 0.044 3.956 15 C 0.225 3.775 16 H 0.036 0.964 17 C -0.173 4.173 18 C -0.510 4.510 19 H 0.066 0.934 20 C 0.063 3.937 21 N -0.888 5.888 22 Si 0.902 3.098 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 N -0.465 5.465 27 C 0.079 3.921 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.042 0.958 35 H 0.092 0.908 36 H 0.044 0.956 37 H 0.033 0.967 38 H 0.087 0.913 39 H 0.032 0.968 40 H 0.263 0.737 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.031 13.725 4.563 18.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.054 4.054 3 C -0.109 4.109 4 C -0.160 4.160 5 C 0.073 3.927 6 F -0.118 7.118 7 C -0.156 4.156 8 C 0.024 3.976 9 C -0.082 4.082 10 N -0.106 5.106 11 N -0.156 5.156 12 C 0.032 3.968 13 N -0.198 5.198 14 C -0.103 4.103 15 C 0.121 3.879 16 H 0.054 0.946 17 C -0.232 4.232 18 C -0.549 4.549 19 H 0.084 0.916 20 C -0.139 4.139 21 N -0.527 5.527 22 Si 0.729 3.271 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.202 1.202 26 N -0.157 5.157 27 C -0.064 4.064 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.060 0.940 35 H 0.110 0.890 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.105 0.895 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.250 13.701 5.182 18.470 hybrid contribution 0.598 -0.955 -1.146 1.607 sum 11.848 12.746 4.036 17.865 Atomic orbital electron populations 1.20829 0.89589 1.03004 1.03569 1.20069 0.97226 0.91167 0.96937 1.20839 0.92910 0.97855 0.99298 1.21228 0.94922 0.97128 1.02730 1.17388 0.76908 0.94122 1.04277 1.91511 1.28787 1.97387 1.94077 1.21139 0.93539 0.97640 1.03250 1.17062 0.90592 0.88415 1.01510 1.22203 1.00770 0.89952 0.95266 1.74371 1.08194 1.07723 1.20296 1.74812 1.21981 1.03280 1.15494 1.22918 0.88854 0.91666 0.93319 1.59399 1.42016 0.95371 1.23020 1.22264 0.99500 0.95340 0.93195 1.19410 0.80272 0.98325 0.89902 0.94610 1.22439 1.03404 0.98345 0.99019 1.20957 1.05347 0.99868 1.28680 0.91605 1.24909 0.95351 0.97317 0.96358 1.69897 1.09124 1.34838 1.38792 0.86506 0.77327 0.83689 0.79566 1.20139 1.21281 1.20194 1.46316 1.28157 1.12843 1.28405 1.22069 0.90017 1.04984 0.89318 0.89803 0.91463 0.90954 0.84283 0.84421 0.84559 0.93963 0.88957 0.93695 0.94854 0.89472 0.94851 0.92682 0.90035 0.89992 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 9.18 36.00 0.33 -1.01 16 2 C -0.05 -0.61 5.91 -104.23 -0.62 -1.22 16 3 C -0.09 -0.81 9.69 -39.65 -0.38 -1.19 16 4 C -0.14 -1.24 10.02 -39.43 -0.40 -1.63 16 5 C 0.09 0.97 7.29 -39.48 -0.29 0.68 16 6 F -0.14 -1.51 17.26 2.25 0.04 -1.47 16 7 C -0.14 -1.55 8.47 -39.11 -0.33 -1.89 16 8 C 0.03 0.36 5.67 -104.98 -0.60 -0.24 16 9 C 0.18 3.05 6.36 -153.78 -0.98 2.07 16 10 N -0.26 -5.14 11.13 32.59 0.36 -4.78 16 11 N -0.31 -6.69 9.70 30.31 0.29 -6.39 16 12 C 0.39 7.91 6.20 -318.90 -1.98 5.93 16 13 N -0.47 -10.06 4.77 -176.09 -0.84 -10.90 16 14 C 0.04 0.87 8.66 60.07 0.52 1.39 16 15 C 0.23 5.58 2.31 -68.87 -0.16 5.42 16 16 H 0.04 0.99 8.11 -51.93 -0.42 0.57 16 17 C -0.17 -4.32 8.19 37.15 0.30 -4.02 16 18 C -0.51 -13.27 7.81 -34.44 -0.27 -13.54 16 19 H 0.07 1.67 6.81 -52.49 -0.36 1.31 16 20 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 21 N -0.89 -24.68 11.32 55.43 0.63 -24.05 16 22 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 24 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 N -0.46 -7.95 3.23 -122.06 -0.39 -8.34 16 27 C 0.08 1.03 11.08 59.84 0.66 1.69 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 30 H 0.07 1.07 6.72 -51.93 -0.35 0.73 16 31 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 33 H 0.14 1.45 7.07 -52.49 -0.37 1.08 16 34 H 0.04 0.86 6.53 -51.93 -0.34 0.52 16 35 H 0.09 1.83 6.29 -51.93 -0.33 1.50 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.03 0.82 5.94 -51.93 -0.31 0.51 16 38 H 0.09 2.38 6.07 -51.92 -0.32 2.06 16 39 H 0.03 0.80 6.60 -51.93 -0.34 0.46 16 40 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.08 0.83 5.63 -51.93 -0.29 0.53 16 43 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 351.29 15.07 5.29 5.29 Total: -1.00 -30.10 351.29 -9.42 -39.53 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.51 Total: 1.61 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -4.27 Total: -5.97 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.05 Total: -54.47 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.10 -9.42 -39.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646668236.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.912 kcal (2) G-P(sol) polarization free energy of solvation -30.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds