Wall clock time and date at job start Tue Mar 31 2020 12:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37986 * 120.05058 * 2 1 4 4 C 1.38297 * 120.17154 * 180.31848 * 3 2 1 5 5 C 1.38588 * 120.26710 * 359.67394 * 4 3 2 6 6 F 1.35104 * 119.95722 * 180.02562 * 5 4 3 7 7 C 1.38171 * 120.09546 * 0.02562 * 5 4 3 8 8 C 1.39550 * 120.04627 * 179.71174 * 2 1 3 9 9 C 1.47858 * 120.13283 * 359.97438 * 8 2 1 10 10 N 1.31259 * 126.47152 * 310.99863 * 9 8 2 11 11 N 1.28510 * 109.93567 * 179.97438 * 10 9 8 12 12 C 1.31376 * 110.08156 * 0.02562 * 11 10 9 13 13 N 1.38404 * 126.37620 * 180.02562 * 12 11 10 14 14 C 1.46905 * 110.99510 * 306.66835 * 13 12 11 15 15 C 1.46904 * 111.00081 * 70.61497 * 13 12 11 16 16 H 1.09004 * 109.46573 * 55.00583 * 15 13 12 17 17 C 1.52993 * 109.47087 * 295.00482 * 15 13 12 18 18 C 1.50700 * 109.46895 * 175.00424 * 15 13 12 19 19 H 1.08000 * 119.99793 * 0.02562 * 18 15 13 20 20 C 1.37876 * 119.99861 * 180.02562 * 18 15 13 21 21 N 1.31518 * 119.99912 * 359.97438 * 20 18 15 22 22 Si 1.86799 * 119.99940 * 180.02562 * 20 18 15 23 23 H 1.48499 * 109.47310 * 59.99807 * 22 20 18 24 24 H 1.48502 * 109.47095 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47036 * 299.99609 * 22 20 18 26 26 N 1.36475 * 107.25771 * 359.97438 * 12 11 10 27 27 C 1.46496 * 127.16399 * 179.74003 * 26 12 11 28 28 H 1.08999 * 109.47412 * 270.28556 * 1 2 3 29 29 H 1.09006 * 109.47166 * 30.28468 * 1 2 3 30 30 H 1.09002 * 109.46916 * 150.28071 * 1 2 3 31 31 H 1.07998 * 119.91735 * 359.97438 * 3 2 1 32 32 H 1.08008 * 119.86428 * 179.69219 * 4 3 2 33 33 H 1.07996 * 120.09025 * 179.97438 * 7 5 4 34 34 H 1.08994 * 109.47285 * 54.80791 * 14 13 12 35 35 H 1.08996 * 109.46989 * 174.80731 * 14 13 12 36 36 H 1.09003 * 109.46732 * 294.80384 * 14 13 12 37 37 H 1.09000 * 109.47596 * 60.00537 * 17 15 13 38 38 H 1.09009 * 109.46587 * 179.97438 * 17 15 13 39 39 H 1.08997 * 109.47274 * 299.99906 * 17 15 13 40 40 H 0.96998 * 119.99729 * 180.02562 * 21 20 18 41 41 H 1.09000 * 109.47152 * 84.95844 * 27 26 12 42 42 H 1.09006 * 109.46934 * 204.95808 * 27 26 12 43 43 H 1.09001 * 109.47488 * 324.95678 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1944 0.0000 4 6 3.5809 1.1973 -0.0066 5 6 4.2820 0.0018 -0.0065 6 9 5.6330 0.0120 -0.0125 7 6 3.6013 -1.2005 -0.0003 8 6 2.2057 -1.2080 0.0061 9 6 1.4704 -2.4907 0.0131 10 7 0.4819 -2.8191 0.8119 11 7 0.0770 -4.0085 0.5419 12 6 0.7827 -4.5120 -0.4453 13 7 0.6306 -5.7684 -1.0056 14 6 0.6800 -6.8139 0.0252 15 6 -0.6145 -5.8520 -1.7808 16 1 -0.6335 -5.0553 -2.5245 17 6 -1.8118 -5.7007 -0.8404 18 6 -0.6858 -7.1881 -2.4740 19 1 0.1135 -7.9038 -2.3507 20 6 -1.7716 -7.4969 -3.2656 21 7 -2.7453 -6.6256 -3.4153 22 14 -1.8604 -9.1535 -4.1243 23 1 -1.8353 -10.2385 -3.1108 24 1 -3.1184 -9.2374 -4.9090 25 1 -0.6979 -9.3011 -5.0365 26 7 1.6929 -3.5653 -0.8164 27 6 2.7014 -3.6735 -1.8735 28 1 -0.3634 0.0051 1.0276 29 1 -0.3634 0.8875 -0.5183 30 1 -0.3633 -0.8925 -0.5095 31 1 1.6574 2.1294 -0.0004 32 1 4.1167 2.1351 -0.0116 33 1 4.1477 -2.1321 -0.0006 34 1 -0.0625 -6.6013 0.7943 35 1 0.4664 -7.7817 -0.4283 36 1 1.6730 -6.8344 0.4745 37 1 -1.7603 -4.7342 -0.3390 38 1 -2.7356 -5.7622 -1.4158 39 1 -1.7927 -6.4973 -0.0967 40 1 -3.5093 -6.8430 -3.9720 41 1 2.2542 -3.4062 -2.8309 42 1 3.5284 -2.9971 -1.6572 43 1 3.0719 -4.6976 -1.9188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646668236.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:20 Heat of formation + Delta-G solvation = 62.384935 kcal Electronic energy + Delta-G solvation = -26861.816153 eV Core-core repulsion = 23051.008182 eV Total energy + Delta-G solvation = -3810.807971 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.93217 -43.98308 -40.25623 -38.97430 -36.03709 -34.90412 -33.70348 -32.94543 -30.98329 -29.89530 -28.65192 -27.66116 -27.27020 -26.95092 -24.72430 -23.39239 -22.98817 -21.68592 -21.15327 -18.79827 -18.43646 -17.90303 -17.66175 -17.15730 -16.99875 -16.63364 -16.58952 -16.39223 -15.76010 -15.43403 -14.97983 -14.83663 -14.66178 -14.50096 -14.25854 -14.16706 -13.76759 -13.37731 -13.11983 -13.07926 -13.03548 -12.80636 -12.78245 -12.68664 -12.62483 -12.46901 -12.13465 -12.10967 -12.06074 -11.67037 -11.18321 -10.96698 -10.61109 -10.51477 -9.84847 -9.54044 -9.43052 -8.14853 -6.28712 -0.27116 0.07934 0.72974 1.27076 1.46361 1.47773 1.55387 1.70144 2.41673 2.44956 2.86151 3.06286 3.15916 3.33509 3.68021 3.69390 3.82021 3.93469 4.09286 4.17117 4.24287 4.31683 4.48391 4.52807 4.62147 4.63669 4.67938 4.72524 4.77534 4.89998 4.93168 4.98199 5.00704 5.06724 5.08503 5.13614 5.23864 5.35023 5.43714 5.59442 5.60609 5.75327 5.80393 5.96191 6.18341 6.57303 6.80442 7.40437 7.61855 8.91860 Molecular weight = 318.16amu Principal moments of inertia in cm(-1) A = 0.022544 B = 0.003224 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.735506 B = 8683.761630 C = 9040.479481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.060 4.060 3 C -0.078 4.078 4 C -0.122 4.122 5 C 0.087 3.913 6 F -0.140 7.140 7 C -0.134 4.134 8 C -0.005 4.005 9 C 0.209 3.791 10 N -0.297 5.297 11 N -0.340 5.340 12 C 0.362 3.638 13 N -0.467 5.467 14 C 0.049 3.951 15 C 0.236 3.764 16 H -0.001 1.001 17 C -0.154 4.154 18 C -0.520 4.520 19 H 0.072 0.928 20 C 0.015 3.985 21 N -0.921 5.921 22 Si 0.968 3.032 23 H -0.268 1.268 24 H -0.288 1.288 25 H -0.268 1.268 26 N -0.464 5.464 27 C 0.074 3.926 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.033 0.967 31 H 0.175 0.825 32 H 0.172 0.828 33 H 0.140 0.860 34 H 0.029 0.971 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.028 0.972 38 H 0.061 0.939 39 H 0.033 0.967 40 H 0.263 0.737 41 H 0.082 0.918 42 H 0.113 0.887 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.257 15.298 4.337 21.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.062 4.062 3 C -0.096 4.096 4 C -0.141 4.141 5 C 0.068 3.932 6 F -0.119 7.119 7 C -0.155 4.155 8 C -0.007 4.007 9 C -0.057 4.057 10 N -0.138 5.138 11 N -0.185 5.185 12 C 0.005 3.995 13 N -0.192 5.192 14 C -0.098 4.098 15 C 0.131 3.869 16 H 0.016 0.984 17 C -0.214 4.214 18 C -0.558 4.558 19 H 0.090 0.910 20 C -0.185 4.185 21 N -0.560 5.560 22 Si 0.793 3.207 23 H -0.193 1.193 24 H -0.214 1.214 25 H -0.193 1.193 26 N -0.156 5.156 27 C -0.068 4.068 28 H 0.098 0.902 29 H 0.114 0.886 30 H 0.052 0.948 31 H 0.193 0.807 32 H 0.189 0.811 33 H 0.158 0.842 34 H 0.047 0.953 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.047 0.953 38 H 0.080 0.920 39 H 0.052 0.948 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.132 0.868 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.509 15.276 4.966 20.989 hybrid contribution 0.004 -1.230 -1.037 1.609 sum 13.513 14.046 3.929 19.883 Atomic orbital electron populations 1.20775 0.90194 1.02449 1.03197 1.20201 0.97009 0.91727 0.97222 1.21175 0.93079 0.97933 0.97415 1.21631 0.94875 0.97763 0.99862 1.17497 0.76899 0.94370 1.04473 1.91515 1.28889 1.97391 1.94108 1.21111 0.92679 0.98598 1.03081 1.17130 0.91323 0.87295 1.04987 1.22860 0.99108 0.90519 0.93223 1.74286 1.10161 1.07249 1.22101 1.74664 1.23034 1.04386 1.16378 1.22809 0.90394 0.91984 0.94279 1.59259 1.39913 0.96468 1.23581 1.22257 1.00624 0.94525 0.92389 1.19056 0.81722 0.96711 0.89442 0.98353 1.22226 1.02531 0.98078 0.98549 1.21231 1.05551 1.00283 1.28723 0.90961 1.25749 0.94940 1.00782 0.97008 1.70045 1.09673 1.36748 1.39489 0.85456 0.77306 0.79406 0.78540 1.19284 1.21376 1.19313 1.46517 1.28110 1.12095 1.28834 1.22354 0.89940 1.06174 0.88297 0.90210 0.88551 0.94837 0.80715 0.81092 0.84209 0.95258 0.89308 0.91098 0.95271 0.91980 0.94765 0.92784 0.89966 0.86846 0.87955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.52 9.18 71.23 0.65 -1.87 16 2 C -0.06 -1.28 5.91 -19.61 -0.12 -1.39 16 3 C -0.08 -1.08 9.69 22.22 0.22 -0.86 16 4 C -0.12 -1.60 10.02 22.37 0.22 -1.38 16 5 C 0.09 1.54 7.29 22.34 0.16 1.71 16 6 F -0.14 -2.62 17.26 44.97 0.78 -1.84 16 7 C -0.13 -2.83 8.47 22.57 0.19 -2.63 16 8 C 0.00 -0.12 5.67 -20.09 -0.11 -0.23 16 9 C 0.21 7.07 6.36 136.22 0.87 7.94 16 10 N -0.30 -12.02 11.13 -50.80 -0.57 -12.59 16 11 N -0.34 -15.27 9.70 -58.02 -0.56 -15.84 16 12 C 0.36 15.25 6.20 260.12 1.61 16.87 16 13 N -0.47 -20.41 4.77 -711.02 -3.39 -23.80 16 14 C 0.05 1.94 8.66 127.69 1.11 3.05 16 15 C 0.24 12.18 2.31 44.17 0.10 12.28 16 16 H 0.00 -0.08 8.11 -2.39 -0.02 -0.10 16 17 C -0.15 -8.10 8.19 71.98 0.59 -7.51 16 18 C -0.52 -27.47 7.81 25.60 0.20 -27.28 16 19 H 0.07 3.66 6.81 -2.91 -0.02 3.64 16 20 C 0.01 0.78 5.30 84.65 0.45 1.23 16 21 N -0.92 -52.56 11.32 21.45 0.24 -52.32 16 22 Si 0.97 42.12 29.54 68.60 2.03 44.15 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 24 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 N -0.46 -16.11 3.23 -540.09 -1.75 -17.85 16 27 C 0.07 1.87 11.08 127.77 1.42 3.28 16 28 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.10 1.58 8.09 -2.38 -0.02 1.56 16 30 H 0.03 1.02 6.72 -2.39 -0.02 1.01 16 31 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 32 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 33 H 0.14 2.74 7.07 -2.91 -0.02 2.72 16 34 H 0.03 1.21 6.53 -2.39 -0.02 1.20 16 35 H 0.09 3.53 6.29 -2.39 -0.02 3.51 16 36 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.03 1.51 5.94 -2.39 -0.01 1.50 16 38 H 0.06 3.55 6.07 -2.38 -0.01 3.54 16 39 H 0.03 1.72 6.60 -2.39 -0.02 1.70 16 40 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 41 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.11 2.11 5.63 -2.38 -0.01 2.09 16 43 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -68.13 351.29 5.38 -62.74 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 1.04 Total: 14.14 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 7.56 Total: 3.21 kcal Atomic # 7 Polarization: -116.38 SS G_CDS: -6.02 Total: -122.40 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.78 Total: -1.84 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -68.13 5.38 -62.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646668236.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.128 kcal (2) G-P(sol) polarization free energy of solvation -68.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds