Wall clock time and date at job start Tue Mar 31 2020 12:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37993 * 120.05043 * 2 1 4 4 C 1.38295 * 120.16980 * 179.97438 * 3 2 1 5 5 C 1.38603 * 120.26783 * 0.02562 * 4 3 2 6 6 F 1.35101 * 119.95121 * 180.02562 * 5 4 3 7 7 C 1.38165 * 120.08931 * 0.02562 * 5 4 3 8 8 C 1.39554 * 119.83149 * 359.72552 * 7 5 4 9 9 C 1.47854 * 120.13201 * 180.27306 * 8 7 5 10 10 N 1.31255 * 126.46812 * 229.01782 * 9 8 7 11 11 N 1.28518 * 109.93047 * 180.02562 * 10 9 8 12 12 C 1.31370 * 110.08303 * 359.97438 * 11 10 9 13 13 N 1.38402 * 126.37207 * 180.02562 * 12 11 10 14 14 C 1.46910 * 111.00027 * 236.07093 * 13 12 11 15 15 C 1.46896 * 111.00189 * 0.02562 * 13 12 11 16 16 H 1.09003 * 109.46920 * 300.00297 * 15 13 12 17 17 C 1.52994 * 109.47029 * 59.99870 * 15 13 12 18 18 C 1.50696 * 109.47254 * 179.97438 * 15 13 12 19 19 H 1.08000 * 120.00388 * 0.02562 * 18 15 13 20 20 C 1.37883 * 120.00288 * 179.97438 * 18 15 13 21 21 N 1.31512 * 119.99453 * 0.02562 * 20 18 15 22 22 Si 1.86796 * 120.00159 * 180.02562 * 20 18 15 23 23 H 1.48497 * 109.47224 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47061 * 120.00314 * 22 20 18 25 25 H 1.48502 * 109.47059 * 240.00194 * 22 20 18 26 26 N 1.36472 * 107.25601 * 359.73856 * 12 11 10 27 27 C 1.46494 * 127.16667 * 180.28281 * 26 12 11 28 28 H 1.09001 * 109.47829 * 89.99474 * 1 2 3 29 29 H 1.09003 * 109.47223 * 329.99824 * 1 2 3 30 30 H 1.09000 * 109.47852 * 210.00019 * 1 2 3 31 31 H 1.08003 * 119.91069 * 359.97438 * 3 2 1 32 32 H 1.07998 * 119.86447 * 180.02562 * 4 3 2 33 33 H 1.08006 * 120.08436 * 180.02562 * 7 5 4 34 34 H 1.09000 * 109.46564 * 59.99874 * 14 13 12 35 35 H 1.08994 * 109.47111 * 180.02562 * 14 13 12 36 36 H 1.08999 * 109.46733 * 299.99867 * 14 13 12 37 37 H 1.09003 * 109.47464 * 300.00106 * 17 15 13 38 38 H 1.09003 * 109.46921 * 60.00428 * 17 15 13 39 39 H 1.09007 * 109.47292 * 180.02562 * 17 15 13 40 40 H 0.97001 * 119.99757 * 180.02562 * 21 20 18 41 41 H 1.09000 * 109.47206 * 269.64148 * 27 26 12 42 42 H 1.09000 * 109.47126 * 29.63829 * 27 26 12 43 43 H 1.09002 * 109.47708 * 149.63782 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1944 0.0000 4 6 3.5809 1.1973 0.0005 5 6 4.2820 0.0017 0.0005 6 9 5.6330 0.0120 0.0016 7 6 3.6012 -1.2005 -0.0005 8 6 2.2056 -1.2081 0.0042 9 6 1.4703 -2.4908 0.0092 10 7 0.4791 -2.8249 -0.7837 11 7 0.0751 -4.0123 -0.5035 12 6 0.7842 -4.5086 0.4848 13 7 0.6346 -5.7612 1.0542 14 6 0.4091 -5.6578 2.5022 15 6 -0.4503 -6.5086 0.4045 16 1 -1.3860 -5.9605 0.5149 17 6 -0.1323 -6.6802 -1.0822 18 6 -0.5826 -7.8643 1.0491 19 1 0.0734 -8.1427 1.8606 20 6 -1.5418 -8.7490 0.6037 21 7 -2.3409 -8.4098 -0.3842 22 14 -1.7061 -10.4291 1.4033 23 1 -0.6965 -10.5640 2.4839 24 1 -3.0679 -10.5728 1.9780 25 1 -1.4850 -11.4862 0.3839 26 7 1.7000 -3.5616 0.8414 27 6 2.7140 -3.6631 1.8937 28 1 -0.3635 0.0001 -1.0276 29 1 -0.3634 0.8900 0.5139 30 1 -0.3635 -0.8899 0.5138 31 1 1.6573 2.1294 -0.0004 32 1 4.1167 2.1350 0.0010 33 1 4.1476 -2.1322 -0.0001 34 1 -0.4954 -5.0789 2.6885 35 1 0.2954 -6.6563 2.9243 36 1 1.2606 -5.1617 2.9679 37 1 -0.0364 -5.6998 -1.5488 38 1 0.8034 -7.2284 -1.1926 39 1 -0.9376 -7.2345 -1.5644 40 1 -3.0160 -9.0320 -0.6973 41 1 2.3015 -3.2940 2.8327 42 1 3.0116 -4.7050 2.0123 43 1 3.5837 -3.0660 1.6193 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646668238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:24 Heat of formation + Delta-G solvation = 82.505798 kcal Electronic energy + Delta-G solvation = -26815.387726 eV Core-core repulsion = 23005.452261 eV Total energy + Delta-G solvation = -3809.935465 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.11709 -42.54080 -39.35005 -37.20131 -34.83702 -33.05523 -32.70376 -31.88141 -29.28960 -28.93366 -27.68044 -26.73178 -25.50647 -24.37183 -23.56608 -22.36504 -21.59456 -20.56486 -19.56429 -17.75469 -16.96826 -16.60439 -16.22383 -15.97045 -15.80926 -15.65066 -15.25897 -14.75397 -14.52550 -14.12434 -13.91275 -13.81810 -13.64423 -13.41543 -13.09360 -12.93241 -12.43338 -12.16573 -11.97897 -11.92018 -11.85806 -11.43262 -11.25693 -11.05721 -10.89088 -10.58236 -10.50756 -10.25219 -10.09650 -9.99833 -9.81924 -9.64744 -9.15237 -8.77807 -8.60838 -8.44405 -7.40333 -6.08136 -4.16462 0.66105 0.89611 2.14309 2.53674 3.16887 3.25060 3.33052 3.35479 3.39678 3.89544 4.23454 4.28587 4.50586 4.53056 4.62435 4.70222 4.73831 4.96937 5.07553 5.23484 5.32492 5.37835 5.46194 5.54809 5.56942 5.66437 5.70752 5.77052 5.87729 5.92546 6.02198 6.17161 6.22254 6.32675 6.39665 6.56575 6.76804 6.96903 7.12638 7.32607 7.40318 7.63291 7.69844 7.93054 8.24912 8.38408 8.84695 9.22850 9.48364 10.97933 Molecular weight = 318.16amu Principal moments of inertia in cm(-1) A = 0.027178 B = 0.003080 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.007810 B = 9089.611712 C = 9537.757043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.055 4.055 3 C -0.091 4.091 4 C -0.143 4.143 5 C 0.093 3.907 6 F -0.139 7.139 7 C -0.137 4.137 8 C 0.032 3.968 9 C 0.170 3.830 10 N -0.254 5.254 11 N -0.312 5.312 12 C 0.397 3.603 13 N -0.453 5.453 14 C 0.032 3.968 15 C 0.230 3.770 16 H 0.022 0.978 17 C -0.144 4.144 18 C -0.520 4.520 19 H 0.065 0.935 20 C 0.065 3.935 21 N -0.881 5.881 22 Si 0.900 3.100 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.283 1.283 26 N -0.487 5.487 27 C 0.076 3.924 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.031 0.969 35 H 0.100 0.900 36 H 0.051 0.949 37 H 0.045 0.955 38 H 0.023 0.977 39 H 0.087 0.913 40 H 0.263 0.737 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.928 17.902 5.099 21.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.057 4.057 3 C -0.109 4.109 4 C -0.162 4.162 5 C 0.073 3.927 6 F -0.118 7.118 7 C -0.157 4.157 8 C 0.029 3.971 9 C -0.094 4.094 10 N -0.095 5.095 11 N -0.158 5.158 12 C 0.043 3.957 13 N -0.177 5.177 14 C -0.115 4.115 15 C 0.126 3.874 16 H 0.040 0.960 17 C -0.203 4.203 18 C -0.558 4.558 19 H 0.083 0.917 20 C -0.138 4.138 21 N -0.519 5.519 22 Si 0.728 3.272 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.209 1.209 26 N -0.184 5.184 27 C -0.068 4.068 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.156 0.844 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.049 0.951 35 H 0.118 0.882 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.042 0.958 39 H 0.106 0.894 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.115 0.885 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.181 17.547 3.869 20.652 hybrid contribution 0.729 -0.885 1.480 1.872 sum 10.910 16.662 5.349 20.622 Atomic orbital electron populations 1.20811 0.89662 1.02735 1.03647 1.20057 0.97177 0.91177 0.97272 1.20831 0.92903 0.97830 0.99345 1.21214 0.94924 0.97091 1.02990 1.17403 0.76891 0.94143 1.04228 1.91509 1.28825 1.97390 1.94075 1.21152 0.93641 0.97583 1.03366 1.17056 0.90523 0.88461 1.01045 1.22078 1.01457 0.89932 0.95966 1.74383 1.08217 1.07199 1.19717 1.74914 1.22330 1.02611 1.15985 1.23306 0.88436 0.88465 0.95520 1.59033 1.48595 1.05322 1.04711 1.22458 0.98857 1.04216 0.85979 1.19401 0.84497 0.91450 0.92002 0.95983 1.21989 1.00926 1.00204 0.97142 1.21093 1.17594 0.98675 1.18469 0.91664 1.24901 0.95422 0.98527 0.94980 1.69936 1.19900 1.35937 1.26137 0.86416 0.77849 0.83730 0.79239 1.19739 1.20995 1.20884 1.46116 1.28756 1.13473 1.30046 1.22126 0.90387 1.05015 0.89236 0.89773 0.91626 0.91044 0.84362 0.84488 0.84619 0.95071 0.88160 0.93071 0.93591 0.95781 0.89407 0.92727 0.90578 0.88477 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 9.19 36.00 0.33 -0.92 16 2 C -0.05 -0.62 5.91 -104.22 -0.62 -1.24 16 3 C -0.09 -0.79 9.69 -39.65 -0.38 -1.17 16 4 C -0.14 -1.23 10.02 -39.43 -0.40 -1.63 16 5 C 0.09 0.97 7.29 -39.47 -0.29 0.68 16 6 F -0.14 -1.51 17.26 2.25 0.04 -1.48 16 7 C -0.14 -1.57 8.59 -39.12 -0.34 -1.91 16 8 C 0.03 0.42 5.68 -104.98 -0.60 -0.18 16 9 C 0.17 2.82 6.37 -153.78 -0.98 1.84 16 10 N -0.25 -5.09 11.11 32.59 0.36 -4.72 16 11 N -0.31 -7.04 8.98 30.31 0.27 -6.77 16 12 C 0.40 8.14 6.74 -318.91 -2.15 5.99 16 13 N -0.45 -9.67 4.68 -176.09 -0.82 -10.50 16 14 C 0.03 0.57 9.08 60.07 0.55 1.12 16 15 C 0.23 5.85 1.73 -68.87 -0.12 5.73 16 16 H 0.02 0.64 8.11 -51.93 -0.42 0.22 16 17 C -0.14 -3.76 8.77 37.15 0.33 -3.43 16 18 C -0.52 -13.72 7.88 -34.44 -0.27 -13.99 16 19 H 0.07 1.66 6.41 -52.49 -0.34 1.32 16 20 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 21 N -0.88 -24.93 11.32 55.43 0.63 -24.30 16 22 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 N -0.49 -7.97 3.23 -122.07 -0.39 -8.36 16 27 C 0.08 0.86 9.32 59.84 0.56 1.42 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 30 H 0.07 0.99 6.70 -51.93 -0.35 0.64 16 31 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 32 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.14 1.48 6.96 -52.48 -0.37 1.11 16 34 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 1.84 6.10 -51.93 -0.32 1.52 16 36 H 0.05 0.71 5.43 -51.93 -0.28 0.43 16 37 H 0.05 1.18 5.42 -51.93 -0.28 0.89 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 40 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.08 0.73 7.86 -51.93 -0.41 0.32 16 42 H 0.10 1.09 7.57 -51.93 -0.39 0.70 16 43 H 0.08 0.78 5.71 -51.93 -0.30 0.49 16 LS Contribution 348.26 15.07 5.25 5.25 Total: -1.00 -31.27 348.26 -9.59 -40.87 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.43 Total: 0.44 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -4.47 Total: -6.05 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 0.04 Total: -54.65 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.27 -9.59 -40.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646668238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.372 kcal (2) G-P(sol) polarization free energy of solvation -31.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds