Wall clock time and date at job start Tue Mar 31 2020 12:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37993 * 120.05043 * 2 1 4 4 C 1.38295 * 120.16980 * 179.97438 * 3 2 1 5 5 C 1.38603 * 120.26783 * 0.02562 * 4 3 2 6 6 F 1.35101 * 119.95121 * 180.02562 * 5 4 3 7 7 C 1.38165 * 120.08931 * 0.02562 * 5 4 3 8 8 C 1.39554 * 119.83149 * 359.72552 * 7 5 4 9 9 C 1.47854 * 120.13201 * 180.27306 * 8 7 5 10 10 N 1.31255 * 126.46812 * 229.01782 * 9 8 7 11 11 N 1.28518 * 109.93047 * 180.02562 * 10 9 8 12 12 C 1.31370 * 110.08303 * 359.97438 * 11 10 9 13 13 N 1.38402 * 126.37207 * 180.02562 * 12 11 10 14 14 C 1.46910 * 111.00027 * 236.07093 * 13 12 11 15 15 C 1.46896 * 111.00189 * 0.02562 * 13 12 11 16 16 H 1.09003 * 109.46920 * 300.00297 * 15 13 12 17 17 C 1.52994 * 109.47029 * 59.99870 * 15 13 12 18 18 C 1.50696 * 109.47254 * 179.97438 * 15 13 12 19 19 H 1.08000 * 120.00388 * 0.02562 * 18 15 13 20 20 C 1.37883 * 120.00288 * 179.97438 * 18 15 13 21 21 N 1.31512 * 119.99453 * 0.02562 * 20 18 15 22 22 Si 1.86796 * 120.00159 * 180.02562 * 20 18 15 23 23 H 1.48497 * 109.47224 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47061 * 120.00314 * 22 20 18 25 25 H 1.48502 * 109.47059 * 240.00194 * 22 20 18 26 26 N 1.36472 * 107.25601 * 359.73856 * 12 11 10 27 27 C 1.46494 * 127.16667 * 180.28281 * 26 12 11 28 28 H 1.09001 * 109.47829 * 89.99474 * 1 2 3 29 29 H 1.09003 * 109.47223 * 329.99824 * 1 2 3 30 30 H 1.09000 * 109.47852 * 210.00019 * 1 2 3 31 31 H 1.08003 * 119.91069 * 359.97438 * 3 2 1 32 32 H 1.07998 * 119.86447 * 180.02562 * 4 3 2 33 33 H 1.08006 * 120.08436 * 180.02562 * 7 5 4 34 34 H 1.09000 * 109.46564 * 59.99874 * 14 13 12 35 35 H 1.08994 * 109.47111 * 180.02562 * 14 13 12 36 36 H 1.08999 * 109.46733 * 299.99867 * 14 13 12 37 37 H 1.09003 * 109.47464 * 300.00106 * 17 15 13 38 38 H 1.09003 * 109.46921 * 60.00428 * 17 15 13 39 39 H 1.09007 * 109.47292 * 180.02562 * 17 15 13 40 40 H 0.97001 * 119.99757 * 180.02562 * 21 20 18 41 41 H 1.09000 * 109.47206 * 269.64148 * 27 26 12 42 42 H 1.09000 * 109.47126 * 29.63829 * 27 26 12 43 43 H 1.09002 * 109.47708 * 149.63782 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1944 0.0000 4 6 3.5809 1.1973 0.0005 5 6 4.2820 0.0017 0.0005 6 9 5.6330 0.0120 0.0016 7 6 3.6012 -1.2005 -0.0005 8 6 2.2056 -1.2081 0.0042 9 6 1.4703 -2.4908 0.0092 10 7 0.4791 -2.8249 -0.7837 11 7 0.0751 -4.0123 -0.5035 12 6 0.7842 -4.5086 0.4848 13 7 0.6346 -5.7612 1.0542 14 6 0.4091 -5.6578 2.5022 15 6 -0.4503 -6.5086 0.4045 16 1 -1.3860 -5.9605 0.5149 17 6 -0.1323 -6.6802 -1.0822 18 6 -0.5826 -7.8643 1.0491 19 1 0.0734 -8.1427 1.8606 20 6 -1.5418 -8.7490 0.6037 21 7 -2.3409 -8.4098 -0.3842 22 14 -1.7061 -10.4291 1.4033 23 1 -0.6965 -10.5640 2.4839 24 1 -3.0679 -10.5728 1.9780 25 1 -1.4850 -11.4862 0.3839 26 7 1.7000 -3.5616 0.8414 27 6 2.7140 -3.6631 1.8937 28 1 -0.3635 0.0001 -1.0276 29 1 -0.3634 0.8900 0.5139 30 1 -0.3635 -0.8899 0.5138 31 1 1.6573 2.1294 -0.0004 32 1 4.1167 2.1350 0.0010 33 1 4.1476 -2.1322 -0.0001 34 1 -0.4954 -5.0789 2.6885 35 1 0.2954 -6.6563 2.9243 36 1 1.2606 -5.1617 2.9679 37 1 -0.0364 -5.6998 -1.5488 38 1 0.8034 -7.2284 -1.1926 39 1 -0.9376 -7.2345 -1.5644 40 1 -3.0160 -9.0320 -0.6973 41 1 2.3015 -3.2940 2.8327 42 1 3.0116 -4.7050 2.0123 43 1 3.5837 -3.0660 1.6193 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646668238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:23 Heat of formation + Delta-G solvation = 66.135045 kcal Electronic energy + Delta-G solvation = -26816.097615 eV Core-core repulsion = 23005.452261 eV Total energy + Delta-G solvation = -3810.645354 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.92596 -43.95811 -40.23087 -38.88143 -36.16977 -34.87171 -33.67896 -32.89244 -31.20587 -30.29543 -28.81129 -27.66529 -27.31222 -26.04741 -24.59750 -23.74483 -22.89058 -21.70512 -21.16904 -18.74959 -18.56889 -17.83476 -17.61600 -17.28730 -16.81264 -16.65375 -16.59450 -16.32144 -15.78701 -15.60626 -14.94561 -14.88016 -14.63994 -14.53634 -14.46204 -14.20866 -13.88221 -13.62946 -13.06557 -13.01343 -12.89680 -12.76872 -12.75775 -12.67995 -12.40420 -12.26460 -12.11262 -12.09188 -11.99981 -11.54252 -11.25429 -11.09902 -10.67888 -10.56332 -10.04840 -9.58229 -8.99640 -8.13861 -6.29762 -0.23758 0.09507 0.83053 1.26213 1.44346 1.45792 1.57634 1.78847 2.40463 2.46659 2.85316 3.04207 3.17361 3.36211 3.64546 3.69695 3.84750 3.94353 4.04491 4.14150 4.21367 4.29083 4.42768 4.45417 4.51999 4.65997 4.69425 4.78263 4.81435 4.82520 4.91134 4.92888 5.01079 5.12741 5.15460 5.24326 5.30085 5.37685 5.43834 5.52232 5.64189 5.79248 5.89369 5.96249 6.14870 6.52639 6.79974 7.39224 7.75981 8.93054 Molecular weight = 318.16amu Principal moments of inertia in cm(-1) A = 0.027178 B = 0.003080 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.007810 B = 9089.611712 C = 9537.757043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.060 4.060 3 C -0.078 4.078 4 C -0.124 4.124 5 C 0.086 3.914 6 F -0.142 7.142 7 C -0.136 4.136 8 C 0.001 3.999 9 C 0.201 3.799 10 N -0.296 5.296 11 N -0.360 5.360 12 C 0.376 3.624 13 N -0.455 5.455 14 C 0.033 3.967 15 C 0.243 3.757 16 H -0.022 1.022 17 C -0.129 4.129 18 C -0.529 4.529 19 H 0.076 0.924 20 C 0.012 3.988 21 N -0.918 5.918 22 Si 0.971 3.029 23 H -0.258 1.258 24 H -0.281 1.281 25 H -0.283 1.283 26 N -0.479 5.479 27 C 0.064 3.936 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.037 0.963 31 H 0.175 0.825 32 H 0.171 0.829 33 H 0.137 0.863 34 H 0.019 0.981 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.044 0.956 38 H 0.019 0.981 39 H 0.061 0.939 40 H 0.263 0.737 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.321 20.097 6.946 25.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.062 4.062 3 C -0.096 4.096 4 C -0.143 4.143 5 C 0.067 3.933 6 F -0.120 7.120 7 C -0.157 4.157 8 C -0.002 4.002 9 C -0.066 4.066 10 N -0.135 5.135 11 N -0.205 5.205 12 C 0.020 3.980 13 N -0.178 5.178 14 C -0.113 4.113 15 C 0.138 3.862 16 H -0.004 1.004 17 C -0.188 4.188 18 C -0.567 4.567 19 H 0.094 0.906 20 C -0.187 4.187 21 N -0.557 5.557 22 Si 0.795 3.205 23 H -0.182 1.182 24 H -0.207 1.207 25 H -0.209 1.209 26 N -0.175 5.175 27 C -0.077 4.077 28 H 0.093 0.907 29 H 0.116 0.884 30 H 0.056 0.944 31 H 0.193 0.807 32 H 0.188 0.812 33 H 0.155 0.845 34 H 0.037 0.963 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.063 0.937 38 H 0.039 0.961 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 12.609 19.767 5.739 24.139 hybrid contribution 0.093 -1.303 0.905 1.589 sum 12.702 18.464 6.644 23.376 Atomic orbital electron populations 1.20766 0.90082 1.02607 1.03063 1.20200 0.97068 0.91624 0.97288 1.21177 0.93015 0.97973 0.97401 1.21617 0.94933 0.97663 1.00080 1.17512 0.76855 0.94405 1.04532 1.91511 1.28990 1.97397 1.94124 1.21100 0.92839 0.98441 1.03301 1.17107 0.91155 0.87344 1.04604 1.22752 0.99486 0.90623 0.93713 1.74282 1.10653 1.06700 1.21871 1.74737 1.24297 1.04088 1.17415 1.23116 0.89813 0.89044 0.96031 1.58943 1.46825 1.06038 1.06036 1.22550 1.00245 1.04237 0.84297 1.18965 0.84060 0.91372 0.91820 1.00424 1.21790 0.99453 0.99530 0.97989 1.21407 1.17682 0.99003 1.18634 0.90637 1.25813 0.95024 1.02472 0.95430 1.70093 1.20598 1.37332 1.27642 0.85315 0.78075 0.78622 0.78451 1.18164 1.20708 1.20924 1.46313 1.28498 1.12162 1.30534 1.22541 0.90153 1.06106 0.88878 0.90675 0.88428 0.94415 0.80718 0.81201 0.84541 0.96264 0.88671 0.88786 0.93744 0.96143 0.91987 0.92759 0.88171 0.88016 0.87295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.34 9.19 71.23 0.65 -1.69 16 2 C -0.06 -1.22 5.91 -19.61 -0.12 -1.34 16 3 C -0.08 -1.01 9.69 22.23 0.22 -0.79 16 4 C -0.12 -1.56 10.02 22.37 0.22 -1.33 16 5 C 0.09 1.51 7.29 22.34 0.16 1.67 16 6 F -0.14 -2.64 17.26 44.97 0.78 -1.86 16 7 C -0.14 -2.84 8.59 22.57 0.19 -2.65 16 8 C 0.00 0.02 5.68 -20.10 -0.11 -0.10 16 9 C 0.20 6.71 6.37 136.22 0.87 7.58 16 10 N -0.30 -12.41 11.11 -50.81 -0.56 -12.97 16 11 N -0.36 -17.22 8.98 -58.02 -0.52 -17.74 16 12 C 0.38 15.95 6.74 260.13 1.75 17.71 16 13 N -0.45 -19.95 4.68 -711.04 -3.33 -23.28 16 14 C 0.03 1.18 9.08 127.69 1.16 2.34 16 15 C 0.24 12.98 1.73 44.17 0.08 13.06 16 16 H -0.02 -1.34 8.11 -2.39 -0.02 -1.36 16 17 C -0.13 -7.12 8.77 71.98 0.63 -6.49 16 18 C -0.53 -28.56 7.88 25.60 0.20 -28.36 16 19 H 0.08 3.84 6.41 -2.91 -0.02 3.82 16 20 C 0.01 0.67 5.30 84.66 0.45 1.12 16 21 N -0.92 -54.01 11.32 21.45 0.24 -53.76 16 22 Si 0.97 42.74 29.54 68.60 2.03 44.77 16 23 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 26 N -0.48 -15.60 3.23 -540.12 -1.74 -17.34 16 27 C 0.06 1.32 9.32 127.77 1.19 2.52 16 28 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.10 1.41 8.09 -2.39 -0.02 1.39 16 30 H 0.04 1.07 6.70 -2.39 -0.02 1.05 16 31 H 0.18 1.03 8.06 -2.91 -0.02 1.00 16 32 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 33 H 0.14 2.73 6.96 -2.91 -0.02 2.71 16 34 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.09 3.46 6.10 -2.39 -0.01 3.44 16 36 H 0.09 2.47 5.43 -2.39 -0.01 2.45 16 37 H 0.04 2.43 5.42 -2.39 -0.01 2.42 16 38 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.06 3.70 6.07 -2.38 -0.01 3.69 16 40 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 41 H 0.10 1.62 7.86 -2.39 -0.02 1.60 16 42 H 0.10 2.06 7.57 -2.39 -0.02 2.04 16 43 H 0.11 1.73 5.71 -2.39 -0.01 1.72 16 Total: -1.00 -73.20 348.26 5.48 -67.71 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 1.05 Total: 11.23 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 7.55 Total: 3.24 kcal Atomic # 7 Polarization: -119.18 SS G_CDS: -5.91 Total: -125.09 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.78 Total: -1.86 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -73.20 5.48 -67.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646668238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.848 kcal (2) G-P(sol) polarization free energy of solvation -73.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds