Wall clock time and date at job start Tue Mar 31 2020 12:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38390 * 119.90558 * 2 1 4 4 C 1.38287 * 120.32159 * 179.97438 * 3 2 1 5 5 C 1.38226 * 120.11560 * 359.97429 * 4 3 2 6 6 F 1.35101 * 120.09644 * 179.97438 * 5 4 3 7 7 C 1.39747 * 119.80298 * 0.25528 * 5 4 3 8 8 C 1.47826 * 120.16046 * 179.72408 * 7 5 4 9 9 N 1.31267 * 126.47109 * 313.06219 * 8 7 5 10 10 N 1.28516 * 109.94197 * 179.97438 * 9 8 7 11 11 C 1.31345 * 110.08450 * 359.97438 * 10 9 8 12 12 N 1.38437 * 126.37318 * 179.97438 * 11 10 9 13 13 C 1.46906 * 111.00184 * 236.07346 * 12 11 10 14 14 C 1.46901 * 110.99804 * 0.02562 * 12 11 10 15 15 H 1.08994 * 109.47217 * 300.00214 * 14 12 11 16 16 C 1.52996 * 109.46655 * 60.00264 * 14 12 11 17 17 C 1.50701 * 109.46879 * 179.97438 * 14 12 11 18 18 H 1.07993 * 120.00047 * 0.02562 * 17 14 12 19 19 C 1.37877 * 119.99618 * 180.02562 * 17 14 12 20 20 N 1.31521 * 120.00270 * 359.97438 * 19 17 14 21 21 Si 1.86797 * 120.00066 * 180.02562 * 19 17 14 22 22 H 1.48501 * 109.47449 * 89.99660 * 21 19 17 23 23 H 1.48500 * 109.47305 * 209.99952 * 21 19 17 24 24 H 1.48506 * 109.46908 * 329.99864 * 21 19 17 25 25 N 1.36514 * 107.25623 * 359.75564 * 11 10 9 26 26 C 1.46499 * 127.16825 * 180.23813 * 25 11 10 27 27 C 1.37947 * 119.90098 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47010 * 90.00300 * 1 2 3 29 29 H 1.08998 * 109.47334 * 209.99885 * 1 2 3 30 30 H 1.08998 * 109.47209 * 330.00676 * 1 2 3 31 31 H 1.08008 * 119.83988 * 359.97303 * 3 2 1 32 32 H 1.07998 * 119.94304 * 179.97438 * 4 3 2 33 33 H 1.09003 * 109.46722 * 59.99786 * 13 12 11 34 34 H 1.08992 * 109.46918 * 179.97438 * 13 12 11 35 35 H 1.09002 * 109.46985 * 299.99804 * 13 12 11 36 36 H 1.09003 * 109.47206 * 180.02562 * 16 14 12 37 37 H 1.09002 * 109.47507 * 299.99969 * 16 14 12 38 38 H 1.09003 * 109.47600 * 60.00070 * 16 14 12 39 39 H 0.97002 * 119.99887 * 180.02562 * 20 19 17 40 40 H 1.08998 * 109.47732 * 270.81693 * 26 25 11 41 41 H 1.09004 * 109.47020 * 30.81772 * 26 25 11 42 42 H 1.08993 * 109.47154 * 150.81479 * 26 25 11 43 43 H 1.07996 * 120.05875 * 0.02614 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1996 0.0000 4 6 3.5798 1.2097 0.0005 5 6 4.2820 0.0191 0.0016 6 9 5.6329 0.0293 0.0016 7 6 3.5903 -1.1952 -0.0032 8 6 4.3333 -2.4732 -0.0083 9 7 5.3487 -2.7824 -0.7807 10 7 5.7524 -3.9738 -0.5179 11 6 5.0201 -4.4976 0.4384 12 7 5.1622 -5.7629 0.9817 13 6 3.9090 -6.5229 0.8812 14 6 6.2699 -6.4879 0.3451 15 1 6.0739 -6.5859 -0.7226 16 6 7.5732 -5.7144 0.5555 17 6 6.3940 -7.8574 0.9615 18 1 5.7175 -8.1592 1.7472 19 6 7.3714 -8.7250 0.5223 20 7 8.1951 -8.3577 -0.4350 21 14 7.5249 -10.4229 1.2858 22 1 6.6816 -11.3837 0.5301 23 1 8.9425 -10.8623 1.2350 24 1 7.0726 -10.3727 2.6994 25 7 4.0960 -3.5603 0.8002 26 6 3.0638 -3.6873 1.8321 27 6 2.1946 -1.1958 0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.6527 2.1326 -0.0004 32 1 4.1120 2.1494 0.0001 33 1 3.6275 -6.6222 -0.1672 34 1 4.0487 -7.5129 1.3149 35 1 3.1211 -5.9973 1.4207 36 1 8.3951 -6.2521 0.0827 37 1 7.4837 -4.7236 0.1100 38 1 7.7692 -5.6163 1.6232 39 1 8.8825 -8.9682 -0.7443 40 1 2.1591 -4.1064 1.3916 41 1 3.4208 -4.3456 2.6241 42 1 2.8434 -2.7044 2.2484 43 1 1.6540 -2.1307 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646677949.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:29 Heat of formation + Delta-G solvation = 81.029482 kcal Electronic energy + Delta-G solvation = -26808.759233 eV Core-core repulsion = 22998.759750 eV Total energy + Delta-G solvation = -3809.999483 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.83079 -42.44310 -39.34967 -37.18586 -34.79370 -33.19020 -32.69985 -31.87141 -29.26461 -28.86900 -27.60171 -26.83967 -25.48753 -24.34789 -23.55383 -22.52726 -21.57573 -20.35086 -19.48598 -17.69680 -16.87793 -16.74108 -16.37608 -15.86342 -15.66198 -15.46508 -15.16760 -14.57007 -14.43879 -14.14057 -14.01478 -13.93110 -13.57042 -13.42466 -13.13388 -12.91661 -12.41431 -12.34529 -12.10301 -12.00397 -11.90254 -11.41843 -11.22884 -11.02141 -10.90791 -10.58114 -10.54540 -10.21587 -10.06059 -9.94133 -9.73625 -9.48616 -9.25073 -8.81305 -8.56276 -8.42415 -7.35200 -6.05337 -4.13932 0.67065 0.90975 2.19002 2.56194 3.18464 3.27034 3.34206 3.36662 3.44605 4.04583 4.17815 4.30093 4.46184 4.48191 4.56211 4.73792 4.83826 4.87835 5.06280 5.17061 5.25713 5.25893 5.34185 5.46668 5.48396 5.57290 5.62041 5.75595 5.87600 5.93029 5.95083 6.09715 6.15145 6.27311 6.41580 6.57150 6.80377 7.00480 7.16040 7.36705 7.44111 7.66925 7.72222 7.96471 8.28025 8.41425 8.87063 9.28343 9.50699 11.00667 Molecular weight = 318.16amu Principal moments of inertia in cm(-1) A = 0.027039 B = 0.003166 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.278166 B = 8841.953525 C = 9593.391672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.098 4.098 3 C -0.085 4.085 4 C -0.150 4.150 5 C 0.130 3.870 6 F -0.122 7.122 7 C -0.025 4.025 8 C 0.168 3.832 9 N -0.253 5.253 10 N -0.311 5.311 11 C 0.397 3.603 12 N -0.453 5.453 13 C 0.032 3.968 14 C 0.230 3.770 15 H 0.022 0.978 16 C -0.144 4.144 17 C -0.520 4.520 18 H 0.065 0.935 19 C 0.065 3.935 20 N -0.882 5.882 21 Si 0.900 3.100 22 H -0.281 1.281 23 H -0.285 1.285 24 H -0.273 1.273 25 N -0.487 5.487 26 C 0.079 3.921 27 C -0.077 4.077 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.134 0.866 32 H 0.141 0.859 33 H 0.030 0.970 34 H 0.100 0.900 35 H 0.050 0.950 36 H 0.088 0.912 37 H 0.045 0.955 38 H 0.023 0.977 39 H 0.263 0.737 40 H 0.075 0.925 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.548 16.903 3.674 24.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.098 4.098 3 C -0.104 4.104 4 C -0.169 4.169 5 C 0.109 3.891 6 F -0.100 7.100 7 C -0.028 4.028 8 C -0.096 4.096 9 N -0.093 5.093 10 N -0.157 5.157 11 C 0.042 3.958 12 N -0.176 5.176 13 C -0.115 4.115 14 C 0.127 3.873 15 H 0.040 0.960 16 C -0.203 4.203 17 C -0.559 4.559 18 H 0.083 0.917 19 C -0.138 4.138 20 N -0.519 5.519 21 Si 0.728 3.272 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.198 1.198 25 N -0.184 5.184 26 C -0.065 4.065 27 C -0.097 4.097 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.152 0.848 32 H 0.159 0.841 33 H 0.049 0.951 34 H 0.118 0.882 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.042 0.958 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.114 0.886 42 H 0.103 0.897 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.116 16.894 3.032 23.544 hybrid contribution -0.651 -1.218 0.789 1.591 sum -16.767 15.676 3.821 23.269 Atomic orbital electron populations 1.20775 0.90347 1.03044 1.02705 1.19818 0.96588 0.92440 1.00988 1.20970 0.92955 0.98023 0.98456 1.21083 0.94884 0.96894 1.04026 1.17668 0.77528 0.93027 1.00856 1.91581 1.28045 1.97203 1.93168 1.17440 0.92373 0.87602 1.05419 1.21982 1.00471 0.89977 0.97180 1.74400 1.07114 1.08163 1.19664 1.74901 1.24367 1.03109 1.13324 1.23314 0.88174 0.92469 0.91831 1.59041 1.08488 0.97426 1.52690 1.22454 0.88719 1.00087 1.00240 1.19399 0.84021 0.90889 0.93024 0.96000 1.21989 1.00109 0.99134 0.99043 1.21051 1.16758 0.97178 1.20876 0.91714 1.24904 0.95313 0.98642 0.94976 1.69932 1.18553 1.35884 1.27538 0.86469 0.77407 0.83808 0.79536 1.20669 1.21093 1.19835 1.46089 1.28677 1.12454 1.31187 1.22068 0.89792 1.04125 0.90477 1.20980 0.91423 0.98527 0.98728 0.90860 0.91333 0.91226 0.84791 0.84145 0.95104 0.88165 0.93095 0.89396 0.93592 0.95763 0.92673 0.90691 0.88565 0.89734 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.01 36.00 0.36 -0.22 16 2 C -0.10 -0.79 5.87 -104.68 -0.61 -1.41 16 3 C -0.09 -0.66 9.69 -39.51 -0.38 -1.04 16 4 C -0.15 -1.45 10.01 -39.57 -0.40 -1.84 16 5 C 0.13 1.77 7.28 -39.02 -0.28 1.48 16 6 F -0.12 -2.00 16.66 2.25 0.04 -1.96 16 7 C -0.02 -0.35 5.55 -104.91 -0.58 -0.93 16 8 C 0.17 3.04 7.15 -153.79 -1.10 1.94 16 9 N -0.25 -5.60 12.02 32.58 0.39 -5.21 16 10 N -0.31 -7.49 8.98 30.32 0.27 -7.22 16 11 C 0.40 8.53 6.75 -318.84 -2.15 6.38 16 12 N -0.45 -9.97 4.68 -176.07 -0.82 -10.79 16 13 C 0.03 0.58 9.09 60.07 0.55 1.13 16 14 C 0.23 6.01 1.73 -68.87 -0.12 5.89 16 15 H 0.02 0.65 8.11 -51.93 -0.42 0.23 16 16 C -0.14 -3.87 8.77 37.16 0.33 -3.55 16 17 C -0.52 -13.96 7.88 -34.44 -0.27 -14.23 16 18 H 0.06 1.67 6.41 -52.49 -0.34 1.33 16 19 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 20 N -0.88 -25.35 11.32 55.43 0.63 -24.73 16 21 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 25 N -0.49 -8.37 3.23 -122.06 -0.39 -8.76 16 26 C 0.08 0.90 8.50 59.85 0.51 1.41 16 27 C -0.08 -0.80 8.51 -39.19 -0.33 -1.13 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 30 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 31 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 32 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.10 1.86 6.10 -51.93 -0.32 1.54 16 35 H 0.05 0.72 5.42 -51.93 -0.28 0.43 16 36 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 37 H 0.05 1.22 5.42 -51.93 -0.28 0.94 16 38 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.07 0.67 7.81 -51.93 -0.41 0.27 16 41 H 0.10 1.10 7.64 -51.93 -0.40 0.71 16 42 H 0.08 0.79 7.59 -51.93 -0.39 0.39 16 43 H 0.13 1.19 7.69 -52.49 -0.40 0.79 16 LS Contribution 353.11 15.07 5.32 5.32 Total: -1.00 -33.65 353.11 -9.82 -43.46 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -5.64 Total: -1.52 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -4.59 Total: -4.45 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: 0.07 Total: -56.72 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.65 -9.82 -43.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646677949.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.494 kcal (2) G-P(sol) polarization free energy of solvation -33.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds