Wall clock time and date at job start Tue Mar 31 2020 12:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38390 * 119.90558 * 2 1 4 4 C 1.38287 * 120.32159 * 179.97438 * 3 2 1 5 5 C 1.38226 * 120.11560 * 359.97429 * 4 3 2 6 6 F 1.35101 * 120.09644 * 179.97438 * 5 4 3 7 7 C 1.39747 * 119.80298 * 0.25528 * 5 4 3 8 8 C 1.47826 * 120.16046 * 179.72408 * 7 5 4 9 9 N 1.31267 * 126.47109 * 313.06219 * 8 7 5 10 10 N 1.28516 * 109.94197 * 179.97438 * 9 8 7 11 11 C 1.31345 * 110.08450 * 359.97438 * 10 9 8 12 12 N 1.38437 * 126.37318 * 179.97438 * 11 10 9 13 13 C 1.46906 * 111.00184 * 236.07346 * 12 11 10 14 14 C 1.46901 * 110.99804 * 0.02562 * 12 11 10 15 15 H 1.08994 * 109.47217 * 300.00214 * 14 12 11 16 16 C 1.52996 * 109.46655 * 60.00264 * 14 12 11 17 17 C 1.50701 * 109.46879 * 179.97438 * 14 12 11 18 18 H 1.07993 * 120.00047 * 0.02562 * 17 14 12 19 19 C 1.37877 * 119.99618 * 180.02562 * 17 14 12 20 20 N 1.31521 * 120.00270 * 359.97438 * 19 17 14 21 21 Si 1.86797 * 120.00066 * 180.02562 * 19 17 14 22 22 H 1.48501 * 109.47449 * 89.99660 * 21 19 17 23 23 H 1.48500 * 109.47305 * 209.99952 * 21 19 17 24 24 H 1.48506 * 109.46908 * 329.99864 * 21 19 17 25 25 N 1.36514 * 107.25623 * 359.75564 * 11 10 9 26 26 C 1.46499 * 127.16825 * 180.23813 * 25 11 10 27 27 C 1.37947 * 119.90098 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47010 * 90.00300 * 1 2 3 29 29 H 1.08998 * 109.47334 * 209.99885 * 1 2 3 30 30 H 1.08998 * 109.47209 * 330.00676 * 1 2 3 31 31 H 1.08008 * 119.83988 * 359.97303 * 3 2 1 32 32 H 1.07998 * 119.94304 * 179.97438 * 4 3 2 33 33 H 1.09003 * 109.46722 * 59.99786 * 13 12 11 34 34 H 1.08992 * 109.46918 * 179.97438 * 13 12 11 35 35 H 1.09002 * 109.46985 * 299.99804 * 13 12 11 36 36 H 1.09003 * 109.47206 * 180.02562 * 16 14 12 37 37 H 1.09002 * 109.47507 * 299.99969 * 16 14 12 38 38 H 1.09003 * 109.47600 * 60.00070 * 16 14 12 39 39 H 0.97002 * 119.99887 * 180.02562 * 20 19 17 40 40 H 1.08998 * 109.47732 * 270.81693 * 26 25 11 41 41 H 1.09004 * 109.47020 * 30.81772 * 26 25 11 42 42 H 1.08993 * 109.47154 * 150.81479 * 26 25 11 43 43 H 1.07996 * 120.05875 * 0.02614 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1996 0.0000 4 6 3.5798 1.2097 0.0005 5 6 4.2820 0.0191 0.0016 6 9 5.6329 0.0293 0.0016 7 6 3.5903 -1.1952 -0.0032 8 6 4.3333 -2.4732 -0.0083 9 7 5.3487 -2.7824 -0.7807 10 7 5.7524 -3.9738 -0.5179 11 6 5.0201 -4.4976 0.4384 12 7 5.1622 -5.7629 0.9817 13 6 3.9090 -6.5229 0.8812 14 6 6.2699 -6.4879 0.3451 15 1 6.0739 -6.5859 -0.7226 16 6 7.5732 -5.7144 0.5555 17 6 6.3940 -7.8574 0.9615 18 1 5.7175 -8.1592 1.7472 19 6 7.3714 -8.7250 0.5223 20 7 8.1951 -8.3577 -0.4350 21 14 7.5249 -10.4229 1.2858 22 1 6.6816 -11.3837 0.5301 23 1 8.9425 -10.8623 1.2350 24 1 7.0726 -10.3727 2.6994 25 7 4.0960 -3.5603 0.8002 26 6 3.0638 -3.6873 1.8321 27 6 2.1946 -1.1958 0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.6527 2.1326 -0.0004 32 1 4.1120 2.1494 0.0001 33 1 3.6275 -6.6222 -0.1672 34 1 4.0487 -7.5129 1.3149 35 1 3.1211 -5.9973 1.4207 36 1 8.3951 -6.2521 0.0827 37 1 7.4837 -4.7236 0.1100 38 1 7.7692 -5.6163 1.6232 39 1 8.8825 -8.9682 -0.7443 40 1 2.1591 -4.1064 1.3916 41 1 3.4208 -4.3456 2.6241 42 1 2.8434 -2.7044 2.2484 43 1 1.6540 -2.1307 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646677949.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:28 Heat of formation + Delta-G solvation = 61.870599 kcal Electronic energy + Delta-G solvation = -26809.590024 eV Core-core repulsion = 22998.759750 eV Total energy + Delta-G solvation = -3810.830275 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.92514 -43.94104 -40.15593 -38.92626 -36.17521 -34.91799 -33.72631 -32.80265 -31.22773 -30.28973 -28.74701 -27.53931 -27.29741 -26.05732 -24.63354 -23.82288 -22.98491 -21.58048 -21.09742 -18.68831 -18.57259 -17.90323 -17.79450 -17.18210 -17.10955 -16.69920 -16.54540 -16.26440 -15.63979 -15.25981 -15.10555 -14.82476 -14.61930 -14.45144 -14.40849 -14.23225 -13.88548 -13.64232 -13.03842 -12.88114 -12.87385 -12.83412 -12.73766 -12.69875 -12.32981 -12.27052 -12.14428 -12.09335 -12.04484 -11.62300 -11.16833 -11.08204 -10.74105 -10.55740 -10.09309 -9.56627 -8.99526 -8.14295 -6.30998 -0.24081 0.13964 0.82566 1.22304 1.44407 1.46099 1.56884 1.77976 2.40102 2.50470 2.87248 3.13087 3.17061 3.20996 3.62932 3.74800 3.85728 4.03386 4.13558 4.19013 4.24072 4.29988 4.42752 4.45079 4.54080 4.69931 4.78863 4.80807 4.89345 4.89618 4.92535 4.95177 5.09244 5.11443 5.16534 5.24812 5.33714 5.36555 5.45052 5.52186 5.62525 5.83078 5.87759 5.94973 6.12665 6.50668 6.78663 7.38121 7.73589 8.92622 Molecular weight = 318.16amu Principal moments of inertia in cm(-1) A = 0.027039 B = 0.003166 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.278166 B = 8841.953525 C = 9593.391672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.086 4.086 3 C -0.067 4.067 4 C -0.144 4.144 5 C 0.095 3.905 6 F -0.151 7.151 7 C -0.059 4.059 8 C 0.198 3.802 9 N -0.310 5.310 10 N -0.363 5.363 11 C 0.377 3.623 12 N -0.454 5.454 13 C 0.032 3.968 14 C 0.243 3.757 15 H -0.024 1.024 16 C -0.130 4.130 17 C -0.530 4.530 18 H 0.078 0.922 19 C 0.011 3.989 20 N -0.920 5.920 21 Si 0.974 3.026 22 H -0.272 1.272 23 H -0.287 1.287 24 H -0.261 1.261 25 N -0.477 5.477 26 C 0.065 3.935 27 C -0.072 4.072 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.176 0.824 32 H 0.161 0.839 33 H 0.018 0.982 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.062 0.938 37 H 0.040 0.960 38 H 0.020 0.980 39 H 0.263 0.737 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.111 0.889 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.888 18.368 5.606 29.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.086 4.086 3 C -0.085 4.085 4 C -0.163 4.163 5 C 0.074 3.926 6 F -0.130 7.130 7 C -0.063 4.063 8 C -0.068 4.068 9 N -0.149 5.149 10 N -0.209 5.209 11 C 0.020 3.980 12 N -0.177 5.177 13 C -0.114 4.114 14 C 0.138 3.862 15 H -0.006 1.006 16 C -0.188 4.188 17 C -0.568 4.568 18 H 0.096 0.904 19 C -0.189 4.189 20 N -0.558 5.558 21 Si 0.798 3.202 22 H -0.197 1.197 23 H -0.213 1.213 24 H -0.185 1.185 25 N -0.173 5.173 26 C -0.076 4.076 27 C -0.092 4.092 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.194 0.806 32 H 0.179 0.821 33 H 0.037 0.963 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.039 0.961 39 H 0.073 0.927 40 H 0.127 0.873 41 H 0.117 0.883 42 H 0.129 0.871 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -20.503 18.381 4.984 27.984 hybrid contribution 0.486 -1.410 0.167 1.501 sum -20.016 16.971 5.151 26.743 Atomic orbital electron populations 1.20881 0.87583 1.04683 1.03676 1.20240 0.98362 0.91525 0.98521 1.21508 0.92026 0.99701 0.95307 1.21390 0.95912 0.96140 1.02825 1.18170 0.76618 0.94513 1.03270 1.91504 1.30318 1.97396 1.93755 1.17608 0.93773 0.85696 1.09222 1.22757 0.98528 0.90899 0.94644 1.74281 1.10150 1.08024 1.22492 1.74702 1.26419 1.04410 1.15325 1.23160 0.89591 0.92759 0.92507 1.58987 1.08927 0.97711 1.52102 1.22575 0.88395 1.00220 1.00201 1.18964 0.85097 0.91417 0.90736 1.00610 1.21794 1.00190 0.98676 0.98155 1.21373 1.16956 0.97469 1.20970 0.90428 1.25861 0.94849 1.02874 0.95301 1.70103 1.19256 1.37382 1.29089 0.85323 0.77182 0.78568 0.79143 1.19733 1.21311 1.18463 1.46298 1.28503 1.10990 1.31495 1.22569 0.89290 1.06269 0.89451 1.21167 0.89631 1.00368 0.98020 0.90039 0.90387 0.89069 0.80632 0.82091 0.96310 0.88528 0.88429 0.91926 0.94137 0.96076 0.92747 0.87346 0.88262 0.87065 0.83745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.53 10.01 71.23 0.71 0.18 16 2 C -0.09 -0.99 5.87 -19.90 -0.12 -1.11 16 3 C -0.07 -0.71 9.69 22.32 0.22 -0.49 16 4 C -0.14 -2.41 10.01 22.28 0.22 -2.18 16 5 C 0.10 2.56 7.28 22.63 0.16 2.72 16 6 F -0.15 -5.24 16.66 44.97 0.75 -4.49 16 7 C -0.06 -1.62 5.55 -20.05 -0.11 -1.73 16 8 C 0.20 7.32 7.15 136.21 0.97 8.30 16 9 N -0.31 -14.66 12.02 -50.83 -0.61 -15.27 16 10 N -0.36 -18.77 8.98 -57.99 -0.52 -19.29 16 11 C 0.38 16.81 6.75 260.10 1.75 18.56 16 12 N -0.45 -20.50 4.68 -710.97 -3.33 -23.83 16 13 C 0.03 1.16 9.09 127.69 1.16 2.32 16 14 C 0.24 13.38 1.73 44.17 0.08 13.45 16 15 H -0.02 -1.50 8.11 -2.39 -0.02 -1.52 16 16 C -0.13 -7.43 8.77 71.98 0.63 -6.80 16 17 C -0.53 -29.06 7.88 25.60 0.20 -28.86 16 18 H 0.08 3.97 6.41 -2.91 -0.02 3.95 16 19 C 0.01 0.59 5.30 84.65 0.45 1.04 16 20 N -0.92 -55.18 11.32 21.45 0.24 -54.94 16 21 Si 0.97 43.21 29.54 68.60 2.03 45.23 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 25 N -0.48 -16.29 3.23 -540.10 -1.74 -18.04 16 26 C 0.06 1.30 8.50 127.77 1.09 2.38 16 27 C -0.07 -1.28 8.51 22.52 0.19 -1.09 16 28 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.08 0.29 8.08 -2.39 -0.02 0.27 16 30 H 0.09 0.12 8.08 -2.39 -0.02 0.10 16 31 H 0.18 0.47 8.06 -2.91 -0.02 0.45 16 32 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 33 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.10 3.51 6.10 -2.39 -0.01 3.50 16 35 H 0.10 2.51 5.42 -2.39 -0.01 2.50 16 36 H 0.06 3.86 6.07 -2.39 -0.01 3.84 16 37 H 0.04 2.34 5.42 -2.39 -0.01 2.32 16 38 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 40 H 0.11 1.48 7.81 -2.39 -0.02 1.47 16 41 H 0.10 2.00 7.64 -2.39 -0.02 1.98 16 42 H 0.11 1.68 7.59 -2.39 -0.02 1.66 16 43 H 0.14 2.10 7.69 -2.91 -0.02 2.07 16 Total: -1.00 -81.77 353.11 5.46 -76.30 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 1.04 Total: 7.63 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 7.61 Total: 6.70 kcal Atomic # 7 Polarization: -125.41 SS G_CDS: -5.96 Total: -131.37 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.75 Total: -4.49 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -81.77 5.46 -76.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646677949.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.174 kcal (2) G-P(sol) polarization free energy of solvation -81.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds