Wall clock time and date at job start Tue Mar 31 2020 12:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 119.99935 * 2 1 4 4 H 1.48502 * 109.47510 * 270.00577 * 3 2 1 5 5 H 1.48500 * 109.47264 * 30.00303 * 3 2 1 6 6 H 1.48501 * 109.47136 * 150.00466 * 3 2 1 7 7 C 1.38810 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99959 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00185 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00250 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46940 * 174.95759 * 10 9 7 12 12 N 1.46495 * 110.43678 * 307.76312 * 11 10 9 13 13 C 1.34773 * 120.00180 * 303.02393 * 12 11 10 14 14 O 1.21609 * 120.00341 * 354.73735 * 13 12 11 15 15 C 1.47389 * 120.00169 * 174.73266 * 13 12 11 16 16 C 1.47019 * 127.18556 * 359.69156 * 15 13 12 17 17 C 1.34184 * 105.95018 * 179.83015 * 16 15 13 18 18 O 1.34217 * 109.12193 * 0.43440 * 17 16 15 19 19 C 1.33649 * 110.90827 * 359.70594 * 18 17 16 20 20 C 1.50706 * 125.80167 * 180.02562 * 19 18 17 21 21 C 1.53001 * 117.49745 * 8.62219 * 20 19 18 22 22 C 1.53002 * 60.00208 * 252.51368 * 21 20 19 23 23 C 1.54891 * 110.48579 * 70.31191 * 11 10 9 24 24 C 1.55233 * 102.58764 * 156.67512 * 23 11 10 25 25 C 1.54269 * 104.23304 * 322.08094 * 24 23 11 26 26 C 1.53875 * 106.59778 * 23.61044 * 25 24 23 27 27 H 0.97000 * 120.00266 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00011 * 0.02562 * 9 7 2 29 29 H 1.08998 * 109.46759 * 54.96106 * 10 9 7 30 30 H 1.08997 * 109.46832 * 294.95889 * 10 9 7 31 31 H 0.97005 * 119.99684 * 123.29947 * 12 11 10 32 32 H 1.07998 * 127.03065 * 359.97438 * 16 15 13 33 33 H 1.08000 * 125.44143 * 180.14195 * 17 16 15 34 34 H 1.09002 * 115.55234 * 154.33688 * 20 19 18 35 35 H 1.08996 * 117.49898 * 0.02562 * 21 20 19 36 36 H 1.09000 * 117.49755 * 145.02382 * 21 20 19 37 37 H 1.09005 * 117.49749 * 252.51348 * 22 21 20 38 38 H 1.08996 * 117.51678 * 107.48316 * 22 21 20 39 39 H 1.09008 * 110.75290 * 275.06124 * 23 11 10 40 40 H 1.08997 * 110.75782 * 38.43416 * 23 11 10 41 41 H 1.09004 * 110.46781 * 203.39161 * 24 23 11 42 42 H 1.09001 * 110.47241 * 80.76997 * 24 23 11 43 43 H 1.08998 * 110.03130 * 264.33189 * 25 24 23 44 44 H 1.09000 * 110.03467 * 142.89820 * 25 24 23 45 45 H 1.08999 * 110.03159 * 240.71974 * 26 25 24 46 46 H 1.09000 * 110.03145 * 119.28270 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0687 -4.8169 0.1262 12 7 0.1825 -4.6102 1.2743 13 6 0.7032 -4.4439 2.5062 14 8 1.9010 -4.5604 2.6809 15 6 -0.1791 -4.1207 3.6417 16 6 -1.6376 -3.9382 3.6099 17 6 -2.0023 -3.6625 4.8715 18 8 -0.9107 -3.6520 5.6524 19 6 0.1876 -3.9226 4.9406 20 6 1.5924 -3.9968 5.4811 21 6 1.7686 -3.9427 7.0000 22 6 2.1628 -2.7396 6.1409 23 6 0.2432 -4.9700 -1.1754 24 6 -0.2072 -6.4544 -1.1177 25 6 1.0106 -7.1978 -0.5310 26 6 1.8219 -6.1566 0.2599 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3881 -0.0005 29 1 2.7508 -3.6764 0.8409 30 1 2.6153 -3.7546 -0.9322 31 1 -0.7792 -4.5971 1.1484 32 1 -2.2838 -4.0133 2.7479 33 1 -3.0123 -3.4741 5.2044 34 1 2.2809 -4.6252 4.9163 35 1 0.8685 -3.8539 7.6083 36 1 2.5732 -4.5359 7.4347 37 1 3.2266 -2.5413 6.0103 38 1 1.5221 -1.8588 6.1836 39 1 -0.6180 -4.3018 -1.1674 40 1 0.8660 -4.7888 -2.0514 41 1 -0.4336 -6.8232 -2.1181 42 1 -1.0727 -6.5651 -0.4644 43 1 1.6183 -7.6120 -1.3354 44 1 0.6770 -7.9946 0.1338 45 1 2.8233 -6.0656 -0.1608 46 1 1.8820 -6.4481 1.3085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698636752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:41 Heat of formation + Delta-G solvation = 10.670233 kcal Electronic energy + Delta-G solvation = -27894.420602 eV Core-core repulsion = 24172.537667 eV Total energy + Delta-G solvation = -3721.882935 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.41447 -39.79335 -37.38565 -36.89874 -34.23855 -33.17961 -32.37224 -30.87033 -29.55101 -28.55681 -28.05785 -24.52661 -23.79381 -22.71820 -22.32753 -22.11631 -20.84526 -20.31754 -19.38728 -18.82685 -17.70114 -17.00236 -16.12327 -15.86531 -15.76918 -15.30470 -14.84773 -14.71380 -14.48568 -14.09028 -13.94998 -13.50291 -13.09754 -12.92393 -12.76581 -12.55035 -12.40726 -12.06489 -11.90573 -11.53926 -11.37967 -11.19024 -11.02705 -10.85542 -10.84148 -10.77682 -10.64945 -10.41860 -10.31417 -10.26962 -9.96047 -9.62179 -9.56938 -9.28389 -8.72394 -8.46836 -8.22761 -6.77051 -5.67074 -2.92498 1.58162 2.25951 2.89483 3.48657 3.53862 3.55912 3.63309 3.79348 4.02959 4.47201 4.65433 4.78174 4.81291 4.87425 4.98888 5.01010 5.05143 5.11728 5.38125 5.57393 5.58440 5.61711 5.66966 5.69323 5.73174 5.81336 5.86607 5.89491 5.99013 6.02951 6.07371 6.10322 6.16673 6.20136 6.25611 6.37871 6.44460 6.45294 6.48708 6.63589 6.68949 7.00931 7.19220 7.24087 7.80314 8.07955 8.52528 8.81243 9.63991 10.23224 10.59242 11.56231 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007953 B = 0.006133 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3519.704721 B = 4564.060441 C = 6640.729073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.016 4.016 3 Si 0.903 3.097 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.283 1.283 7 C -0.226 4.226 8 H 0.067 0.933 9 N -0.723 5.723 10 C 0.145 3.855 11 C 0.171 3.829 12 N -0.700 5.700 13 C 0.602 3.398 14 O -0.536 6.536 15 C -0.223 4.223 16 C -0.181 4.181 17 C -0.046 4.046 18 O -0.179 6.179 19 C 0.099 3.901 20 C -0.081 4.081 21 C -0.176 4.176 22 C -0.157 4.157 23 C -0.119 4.119 24 C -0.125 4.125 25 C -0.122 4.122 26 C -0.124 4.124 27 H 0.252 0.748 28 H 0.382 0.618 29 H 0.045 0.955 30 H 0.019 0.981 31 H 0.394 0.606 32 H 0.155 0.845 33 H 0.205 0.795 34 H 0.151 0.849 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.071 0.929 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.714 -14.200 7.923 16.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.212 4.212 3 Si 0.735 3.265 4 H -0.219 1.219 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.358 4.358 8 H 0.085 0.915 9 N -0.367 5.367 10 C 0.017 3.983 11 C 0.085 3.915 12 N -0.350 5.350 13 C 0.390 3.610 14 O -0.415 6.415 15 C -0.227 4.227 16 C -0.200 4.200 17 C -0.111 4.111 18 O -0.075 6.075 19 C 0.046 3.954 20 C -0.098 4.098 21 C -0.212 4.212 22 C -0.194 4.194 23 C -0.157 4.157 24 C -0.163 4.163 25 C -0.160 4.160 26 C -0.163 4.163 27 H 0.062 0.938 28 H 0.215 0.785 29 H 0.063 0.937 30 H 0.037 0.963 31 H 0.228 0.772 32 H 0.173 0.827 33 H 0.222 0.778 34 H 0.169 0.831 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.116 0.884 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.089 0.911 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.712 -14.089 8.333 16.592 hybrid contribution -0.664 1.181 -0.396 1.412 sum -3.376 -12.908 7.937 15.525 Atomic orbital electron populations 1.69647 1.04977 1.25229 1.58700 1.24653 0.95482 0.97381 1.03640 0.86236 0.78731 0.84186 0.77395 1.21896 1.21949 1.20881 1.19227 0.90963 0.84250 1.41366 0.91461 1.42179 1.05620 0.99673 1.89249 1.21062 0.93531 0.85086 0.98628 1.21349 0.90591 0.94950 0.84584 1.45548 1.09556 1.73613 1.06330 1.16916 0.86657 0.75752 0.81696 1.90684 1.14910 1.51500 1.84401 1.21185 0.93843 1.13637 0.94082 1.22857 0.93712 1.05394 0.98036 1.23744 0.90353 1.07158 0.89881 1.83671 1.14600 1.69810 1.39451 1.21608 0.86857 0.97825 0.89077 1.20758 0.88988 1.04559 0.95532 1.23052 1.03694 1.02300 0.92199 1.23035 1.02269 0.92157 1.01950 1.22794 1.00260 0.95675 0.96993 1.22460 0.97739 0.95667 1.00407 1.22130 0.96793 0.97937 0.99120 1.22452 0.98913 0.93739 1.01172 0.93843 0.78476 0.93666 0.96302 0.77219 0.82691 0.77807 0.83113 0.88384 0.88004 0.87564 0.88417 0.90648 0.89797 0.91836 0.92003 0.92098 0.92426 0.91079 0.90787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.66 13.06 55.49 0.72 -27.93 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 3 Si 0.90 23.26 29.55 -169.99 -5.02 18.24 16 4 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 5 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 6 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 7 C -0.23 -6.59 9.99 -15.06 -0.15 -6.74 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.72 -18.75 5.30 -59.91 -0.32 -19.07 16 10 C 0.15 3.16 4.72 -4.04 -0.02 3.14 16 11 C 0.17 2.91 0.39 -130.16 -0.05 2.86 16 12 N -0.70 -11.82 4.53 -47.14 -0.21 -12.04 16 13 C 0.60 11.36 7.05 -12.54 -0.09 11.27 16 14 O -0.54 -11.24 11.88 5.27 0.06 -11.18 16 15 C -0.22 -3.85 6.31 -103.28 -0.65 -4.51 16 16 C -0.18 -2.57 10.60 -37.45 -0.40 -2.96 16 17 C -0.05 -0.57 12.03 29.30 0.35 -0.22 16 18 O -0.18 -2.61 10.23 7.66 0.08 -2.53 16 19 C 0.10 1.61 6.85 -34.96 -0.24 1.37 16 20 C -0.08 -1.20 5.62 -91.76 -0.52 -1.71 16 21 C -0.18 -2.01 10.17 -26.73 -0.27 -2.28 16 22 C -0.16 -2.11 10.23 -26.73 -0.27 -2.39 16 23 C -0.12 -1.77 5.67 -24.55 -0.14 -1.90 16 24 C -0.13 -1.47 6.80 -24.88 -0.17 -1.64 16 25 C -0.12 -1.46 6.80 -25.61 -0.17 -1.64 16 26 C -0.12 -1.85 5.68 -25.61 -0.15 -2.00 16 27 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.38 10.20 7.27 -40.82 -0.30 9.90 16 29 H 0.05 1.10 6.48 -51.93 -0.34 0.76 16 30 H 0.02 0.42 8.02 -51.93 -0.42 0.00 16 31 H 0.39 5.85 7.69 -40.82 -0.31 5.54 16 32 H 0.16 1.84 7.75 -52.49 -0.41 1.44 16 33 H 0.21 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.15 2.38 6.66 -51.93 -0.35 2.04 16 35 H 0.10 1.07 7.96 -51.93 -0.41 0.66 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.07 1.17 8.10 -51.92 -0.42 0.75 16 40 H 0.08 1.27 7.97 -51.93 -0.41 0.86 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.07 1.06 7.84 -51.93 -0.41 0.65 16 46 H 0.07 1.20 6.63 -51.93 -0.34 0.86 16 LS Contribution 373.87 15.07 5.63 5.63 Total: -1.00 -33.95 373.87 -9.13 -43.08 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -7.04 Total: 15.73 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -3.03 Total: -9.93 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: 0.19 Total: -59.04 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.14 Total: -13.71 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.02 Total: 18.24 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.95 -9.13 -43.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698636752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.752 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds