Wall clock time and date at job start Tue Mar 31 2020 12:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 119.99935 * 2 1 4 4 H 1.48502 * 109.47510 * 270.00577 * 3 2 1 5 5 H 1.48500 * 109.47264 * 30.00303 * 3 2 1 6 6 H 1.48501 * 109.47136 * 150.00466 * 3 2 1 7 7 C 1.38810 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99959 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00185 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00250 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46940 * 174.95759 * 10 9 7 12 12 N 1.46495 * 110.43678 * 307.76312 * 11 10 9 13 13 C 1.34773 * 120.00180 * 303.02393 * 12 11 10 14 14 O 1.21609 * 120.00341 * 354.73735 * 13 12 11 15 15 C 1.47389 * 120.00169 * 174.73266 * 13 12 11 16 16 C 1.47019 * 127.18556 * 359.69156 * 15 13 12 17 17 C 1.34184 * 105.95018 * 179.83015 * 16 15 13 18 18 O 1.34217 * 109.12193 * 0.43440 * 17 16 15 19 19 C 1.33649 * 110.90827 * 359.70594 * 18 17 16 20 20 C 1.50706 * 125.80167 * 180.02562 * 19 18 17 21 21 C 1.53001 * 117.49745 * 8.62219 * 20 19 18 22 22 C 1.53002 * 60.00208 * 252.51368 * 21 20 19 23 23 C 1.54891 * 110.48579 * 70.31191 * 11 10 9 24 24 C 1.55233 * 102.58764 * 156.67512 * 23 11 10 25 25 C 1.54269 * 104.23304 * 322.08094 * 24 23 11 26 26 C 1.53875 * 106.59778 * 23.61044 * 25 24 23 27 27 H 0.97000 * 120.00266 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00011 * 0.02562 * 9 7 2 29 29 H 1.08998 * 109.46759 * 54.96106 * 10 9 7 30 30 H 1.08997 * 109.46832 * 294.95889 * 10 9 7 31 31 H 0.97005 * 119.99684 * 123.29947 * 12 11 10 32 32 H 1.07998 * 127.03065 * 359.97438 * 16 15 13 33 33 H 1.08000 * 125.44143 * 180.14195 * 17 16 15 34 34 H 1.09002 * 115.55234 * 154.33688 * 20 19 18 35 35 H 1.08996 * 117.49898 * 0.02562 * 21 20 19 36 36 H 1.09000 * 117.49755 * 145.02382 * 21 20 19 37 37 H 1.09005 * 117.49749 * 252.51348 * 22 21 20 38 38 H 1.08996 * 117.51678 * 107.48316 * 22 21 20 39 39 H 1.09008 * 110.75290 * 275.06124 * 23 11 10 40 40 H 1.08997 * 110.75782 * 38.43416 * 23 11 10 41 41 H 1.09004 * 110.46781 * 203.39161 * 24 23 11 42 42 H 1.09001 * 110.47241 * 80.76997 * 24 23 11 43 43 H 1.08998 * 110.03130 * 264.33189 * 25 24 23 44 44 H 1.09000 * 110.03467 * 142.89820 * 25 24 23 45 45 H 1.08999 * 110.03159 * 240.71974 * 26 25 24 46 46 H 1.09000 * 110.03145 * 119.28270 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0687 -4.8169 0.1262 12 7 0.1825 -4.6102 1.2743 13 6 0.7032 -4.4439 2.5062 14 8 1.9010 -4.5604 2.6809 15 6 -0.1791 -4.1207 3.6417 16 6 -1.6376 -3.9382 3.6099 17 6 -2.0023 -3.6625 4.8715 18 8 -0.9107 -3.6520 5.6524 19 6 0.1876 -3.9226 4.9406 20 6 1.5924 -3.9968 5.4811 21 6 1.7686 -3.9427 7.0000 22 6 2.1628 -2.7396 6.1409 23 6 0.2432 -4.9700 -1.1754 24 6 -0.2072 -6.4544 -1.1177 25 6 1.0106 -7.1978 -0.5310 26 6 1.8219 -6.1566 0.2599 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3881 -0.0005 29 1 2.7508 -3.6764 0.8409 30 1 2.6153 -3.7546 -0.9322 31 1 -0.7792 -4.5971 1.1484 32 1 -2.2838 -4.0133 2.7479 33 1 -3.0123 -3.4741 5.2044 34 1 2.2809 -4.6252 4.9163 35 1 0.8685 -3.8539 7.6083 36 1 2.5732 -4.5359 7.4347 37 1 3.2266 -2.5413 6.0103 38 1 1.5221 -1.8588 6.1836 39 1 -0.6180 -4.3018 -1.1674 40 1 0.8660 -4.7888 -2.0514 41 1 -0.4336 -6.8232 -2.1181 42 1 -1.0727 -6.5651 -0.4644 43 1 1.6183 -7.6120 -1.3354 44 1 0.6770 -7.9946 0.1338 45 1 2.8233 -6.0656 -0.1608 46 1 1.8820 -6.4481 1.3085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698636752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:40 Heat of formation + Delta-G solvation = -10.642149 kcal Electronic energy + Delta-G solvation = -27895.344776 eV Core-core repulsion = 24172.537667 eV Total energy + Delta-G solvation = -3722.807109 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.54601 -41.18243 -38.70332 -37.99592 -36.18511 -34.55321 -33.70453 -32.82361 -30.67658 -29.79805 -29.56507 -26.39373 -25.08773 -23.97325 -23.80880 -23.35236 -22.03886 -21.43727 -20.57398 -20.30047 -19.12039 -18.86347 -17.28793 -17.21776 -17.03141 -16.53100 -16.33881 -16.10970 -15.89804 -15.54092 -15.33451 -15.07827 -14.78534 -14.36787 -14.09257 -13.99189 -13.68865 -13.47602 -13.20021 -13.09288 -12.82650 -12.51462 -12.50041 -12.35381 -12.19806 -12.09140 -11.92924 -11.91777 -11.75730 -11.65624 -11.46122 -11.28651 -11.03130 -10.74274 -10.61817 -9.88350 -9.38683 -8.94343 -7.95003 -5.20667 0.34617 1.16964 1.42082 1.43730 1.52082 1.78751 2.28851 2.50311 2.55021 2.88387 3.37473 3.42726 3.52111 3.71393 3.74811 3.85015 3.94646 3.97947 3.99489 4.18975 4.25241 4.41530 4.53241 4.55802 4.60322 4.66802 4.69008 4.78499 4.83297 4.84344 4.91548 4.93447 5.04408 5.06592 5.10269 5.13170 5.14791 5.18164 5.30723 5.35079 5.40176 5.45591 5.52328 5.78776 6.05073 6.27427 6.71762 7.34646 7.40731 8.09959 8.38468 9.27980 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007953 B = 0.006133 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3519.704721 B = 4564.060441 C = 6640.729073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.069 4.069 3 Si 0.966 3.034 4 H -0.283 1.283 5 H -0.293 1.293 6 H -0.279 1.279 7 C -0.242 4.242 8 H 0.061 0.939 9 N -0.727 5.727 10 C 0.147 3.853 11 C 0.172 3.828 12 N -0.692 5.692 13 C 0.592 3.408 14 O -0.569 6.569 15 C -0.260 4.260 16 C -0.199 4.199 17 C -0.030 4.030 18 O -0.179 6.179 19 C 0.089 3.911 20 C -0.110 4.110 21 C -0.139 4.139 22 C -0.167 4.167 23 C -0.116 4.116 24 C -0.113 4.113 25 C -0.114 4.114 26 C -0.119 4.119 27 H 0.250 0.750 28 H 0.376 0.624 29 H 0.016 0.984 30 H 0.021 0.979 31 H 0.404 0.596 32 H 0.174 0.826 33 H 0.253 0.747 34 H 0.132 0.868 35 H 0.108 0.892 36 H 0.126 0.874 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.972 -15.011 8.333 17.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.261 4.261 3 Si 0.795 3.205 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.374 4.374 8 H 0.079 0.921 9 N -0.369 5.369 10 C 0.019 3.981 11 C 0.085 3.915 12 N -0.343 5.343 13 C 0.381 3.619 14 O -0.450 6.450 15 C -0.264 4.264 16 C -0.218 4.218 17 C -0.095 4.095 18 O -0.076 6.076 19 C 0.036 3.964 20 C -0.128 4.128 21 C -0.175 4.175 22 C -0.204 4.204 23 C -0.154 4.154 24 C -0.151 4.151 25 C -0.151 4.151 26 C -0.158 4.158 27 H 0.059 0.941 28 H 0.209 0.791 29 H 0.034 0.966 30 H 0.038 0.962 31 H 0.239 0.761 32 H 0.191 0.809 33 H 0.269 0.731 34 H 0.150 0.850 35 H 0.127 0.873 36 H 0.145 0.855 37 H 0.129 0.871 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.976 -14.928 8.730 17.744 hybrid contribution -0.243 1.440 -0.499 1.543 sum -4.218 -13.489 8.231 16.355 Atomic orbital electron populations 1.69782 1.06129 1.25764 1.59589 1.25396 0.96430 1.00422 1.03880 0.85254 0.77579 0.80073 0.77579 1.20990 1.21893 1.20398 1.19518 0.91018 0.85771 1.41067 0.92061 1.42226 1.05387 1.00289 1.89021 1.21111 0.94251 0.85523 0.97189 1.21323 0.90379 0.93831 0.85925 1.45482 1.10049 1.72963 1.05773 1.17321 0.86625 0.75344 0.82619 1.90654 1.16313 1.53008 1.85018 1.21367 0.95540 1.15481 0.94060 1.23134 0.92374 1.06540 0.99739 1.24674 0.91284 1.04425 0.89094 1.83687 1.14724 1.69562 1.39581 1.21830 0.87768 0.97639 0.89141 1.20723 0.88469 1.05585 0.97992 1.23157 1.04477 1.00053 0.89841 1.23085 1.02333 0.92039 1.02952 1.22757 0.99375 0.98101 0.95196 1.22419 0.97795 0.92791 1.02047 1.22098 0.96575 0.97107 0.99363 1.22385 0.99123 0.93514 1.00784 0.94096 0.79088 0.96625 0.96164 0.76067 0.80856 0.73085 0.84986 0.87347 0.85542 0.87077 0.89318 0.91548 0.90237 0.89506 0.90917 0.90395 0.91109 0.91559 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.52 13.06 21.65 0.28 -59.24 16 2 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 3 Si 0.97 48.28 29.55 68.60 2.03 50.31 16 4 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16 5 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 6 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 7 C -0.24 -14.41 9.99 84.03 0.84 -13.57 16 8 H 0.06 3.64 7.83 -2.91 -0.02 3.62 16 9 N -0.73 -38.88 5.30 -343.45 -1.82 -40.70 16 10 C 0.15 6.66 4.72 86.38 0.41 7.07 16 11 C 0.17 5.94 0.39 4.68 0.00 5.94 16 12 N -0.69 -23.96 4.53 -421.32 -1.91 -25.87 16 13 C 0.59 23.37 7.05 86.65 0.61 23.98 16 14 O -0.57 -25.43 11.88 -4.06 -0.05 -25.48 16 15 C -0.26 -9.22 6.31 -18.99 -0.12 -9.34 16 16 C -0.20 -5.49 10.60 23.65 0.25 -5.24 16 17 C -0.03 -0.69 12.03 66.89 0.80 0.12 16 18 O -0.18 -5.04 10.23 4.49 0.05 -4.99 16 19 C 0.09 2.95 6.85 25.26 0.17 3.13 16 20 C -0.11 -3.36 5.62 -11.54 -0.06 -3.42 16 21 C -0.14 -3.01 10.17 30.60 0.31 -2.70 16 22 C -0.17 -4.55 10.23 30.60 0.31 -4.24 16 23 C -0.12 -3.36 5.67 32.01 0.18 -3.18 16 24 C -0.11 -2.36 6.80 31.79 0.22 -2.15 16 25 C -0.11 -2.48 6.80 31.32 0.21 -2.27 16 26 C -0.12 -3.57 5.68 31.32 0.18 -3.40 16 27 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 28 H 0.38 20.68 7.27 -92.71 -0.67 20.01 16 29 H 0.02 0.81 6.48 -2.39 -0.02 0.79 16 30 H 0.02 0.92 8.02 -2.39 -0.02 0.90 16 31 H 0.40 12.07 7.69 -92.70 -0.71 11.36 16 32 H 0.17 3.91 7.75 -2.91 -0.02 3.89 16 33 H 0.25 3.01 8.06 -2.91 -0.02 2.99 16 34 H 0.13 4.49 6.66 -2.39 -0.02 4.48 16 35 H 0.11 2.15 7.96 -2.39 -0.02 2.13 16 36 H 0.13 2.11 8.14 -2.39 -0.02 2.10 16 37 H 0.11 2.84 8.14 -2.38 -0.02 2.82 16 38 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.07 2.03 8.10 -2.38 -0.02 2.02 16 40 H 0.08 2.36 7.97 -2.39 -0.02 2.34 16 41 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.07 2.01 7.84 -2.39 -0.02 2.00 16 46 H 0.06 1.91 6.63 -2.39 -0.02 1.89 16 Total: -1.00 -75.79 373.87 2.98 -72.81 By element: Atomic # 1 Polarization: 46.43 SS G_CDS: -0.38 Total: 46.05 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 4.78 Total: -12.89 kcal Atomic # 7 Polarization: -122.36 SS G_CDS: -3.45 Total: -125.81 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: 0.00 Total: -30.47 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 2.03 Total: 50.31 kcal Total: -75.79 2.98 -72.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698636752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.171 kcal (2) G-P(sol) polarization free energy of solvation -75.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds