Wall clock time and date at job start Tue Mar 31 2020 12:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38263 * 119.73244 * 2 1 4 4 C 1.37934 * 120.09320 * 179.76237 * 3 2 1 5 5 C 1.39492 * 119.76673 * 0.47068 * 4 3 2 6 6 C 1.47849 * 120.03993 * 179.78045 * 5 4 3 7 7 O 1.21553 * 119.99954 * 179.72577 * 6 5 4 8 8 N 1.34777 * 119.99699 * 0.02562 * 6 5 4 9 9 C 1.46505 * 119.99724 * 179.72334 * 8 6 5 10 10 C 1.52999 * 109.47192 * 180.02562 * 9 8 6 11 11 H 1.09008 * 109.46756 * 304.99967 * 10 9 8 12 12 O 1.42895 * 109.47498 * 64.99545 * 10 9 8 13 13 C 1.53001 * 109.47159 * 185.00359 * 10 9 8 14 14 N 1.46501 * 109.46928 * 179.97438 * 13 10 9 15 15 C 1.36931 * 119.99947 * 179.97438 * 14 13 10 16 16 H 1.08001 * 120.00093 * 359.97438 * 15 14 13 17 17 C 1.38819 * 120.00328 * 180.02562 * 15 14 13 18 18 N 1.31613 * 119.99886 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99729 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46971 * 90.00539 * 19 17 15 21 21 H 1.48497 * 109.47157 * 210.00376 * 19 17 15 22 22 H 1.48498 * 109.47408 * 330.01038 * 19 17 15 23 23 C 1.39774 * 119.91678 * 359.50949 * 5 4 3 24 24 C 1.37976 * 119.76116 * 0.25159 * 23 5 4 25 25 C 1.51402 * 109.75730 * 180.02562 * 24 23 5 26 26 C 1.54342 * 105.17244 * 342.81658 * 25 24 23 27 27 C 1.51350 * 130.40825 * 180.24902 * 23 5 4 28 28 H 1.09003 * 109.47212 * 270.02295 * 1 2 3 29 29 H 1.08993 * 109.47611 * 30.02766 * 1 2 3 30 30 H 1.09007 * 109.47143 * 150.02961 * 1 2 3 31 31 H 1.07996 * 119.95293 * 359.97438 * 3 2 1 32 32 H 1.08001 * 120.11604 * 180.25643 * 4 3 2 33 33 H 0.97000 * 120.00483 * 359.72766 * 8 6 5 34 34 H 1.09003 * 109.46699 * 299.99993 * 9 8 6 35 35 H 1.08993 * 109.47199 * 60.00006 * 9 8 6 36 36 H 0.96701 * 113.99770 * 60.00567 * 12 10 9 37 37 H 1.09001 * 109.46338 * 299.99346 * 13 10 9 38 38 H 1.08994 * 109.47214 * 59.99089 * 13 10 9 39 39 H 0.96998 * 120.00146 * 359.97438 * 14 13 10 40 40 H 0.97007 * 119.99598 * 179.97438 * 18 17 15 41 41 H 1.08994 * 110.30241 * 223.88764 * 25 24 23 42 42 H 1.08998 * 110.29823 * 101.73989 * 25 24 23 43 43 H 1.08997 * 110.83118 * 268.09637 * 26 25 24 44 44 H 1.08998 * 110.99972 * 144.60379 * 26 25 24 45 45 H 1.09003 * 110.30473 * 316.08972 * 27 23 5 46 46 H 1.09005 * 110.30721 * 78.24873 * 27 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1927 1.2006 0.0000 4 6 3.5720 1.2093 0.0049 5 6 4.2722 0.0028 0.0000 6 6 5.7507 0.0051 0.0004 7 8 6.3601 -1.0466 0.0011 8 7 6.4227 1.1734 0.0060 9 6 7.8877 1.1757 0.0125 10 6 8.3955 2.6189 0.0186 11 1 7.9637 3.1596 -0.8237 12 8 8.0110 3.2540 1.2396 13 6 9.9209 2.6234 -0.1004 14 7 10.4070 4.0054 -0.0951 15 6 11.7490 4.2595 -0.1915 16 1 12.4493 3.4411 -0.2710 17 6 12.2098 5.5690 -0.1860 18 7 13.4997 5.8131 -0.2791 19 14 10.9988 6.9845 -0.0477 20 1 10.7860 7.3158 1.3842 21 1 11.5423 8.1718 -0.7549 22 1 9.7054 6.5913 -0.6622 23 6 3.5743 -1.2082 0.0004 24 6 2.1945 -1.2035 0.0005 25 6 1.6780 -2.6267 0.0016 26 6 2.8778 -3.4923 -0.4378 27 6 4.0829 -2.6337 0.0008 28 1 -0.3634 0.0004 1.0277 29 1 -0.3634 0.8896 -0.5142 30 1 -0.3634 -0.8903 -0.5134 31 1 1.6476 2.1329 -0.0004 32 1 4.1080 2.1469 0.0091 33 1 5.9364 2.0127 0.0058 34 1 8.2479 0.6603 0.9029 35 1 8.2558 0.6645 -0.8770 36 1 8.3604 2.8253 2.0329 37 1 10.3525 2.0828 0.7419 38 1 10.2140 2.1390 -1.0317 39 1 9.7782 4.7405 -0.0233 40 1 13.8216 6.7282 -0.2756 41 1 0.8564 -2.7314 -0.7069 42 1 1.3535 -2.9104 1.0028 43 1 2.8773 -3.6357 -1.5183 44 1 2.8771 -4.4521 0.0788 45 1 4.9037 -2.7426 -0.7082 46 1 4.4063 -2.9197 1.0018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699071974.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:16 Heat of formation + Delta-G solvation = -60.385437 kcal Electronic energy + Delta-G solvation = -25849.025891 eV Core-core repulsion = 22124.061751 eV Total energy + Delta-G solvation = -3724.964140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.93434 -39.31901 -37.71360 -36.20251 -34.50435 -34.13605 -33.38695 -31.48576 -29.64661 -29.42783 -28.29945 -27.34942 -25.34840 -23.00759 -22.28893 -21.74325 -21.44749 -20.97475 -19.91952 -17.84440 -17.69126 -16.69603 -16.13994 -16.03762 -15.91605 -15.21421 -15.18071 -14.78726 -14.61076 -14.36998 -14.02583 -13.75567 -13.63813 -13.45035 -13.20405 -13.12202 -12.76182 -12.64057 -12.43522 -12.33341 -12.06492 -11.95914 -11.63306 -11.50709 -11.34976 -11.30157 -11.17007 -10.87582 -10.81893 -10.19757 -10.06419 -9.72981 -9.55697 -9.24227 -8.94374 -8.88872 -8.85382 -7.26998 -5.78651 -3.14870 0.56812 1.01859 2.66527 3.01925 3.38871 3.43638 3.46059 3.54558 4.03691 4.22247 4.41268 4.47990 4.56649 4.59099 4.67786 4.69961 4.73779 4.77938 4.89627 5.08633 5.12920 5.17682 5.25864 5.35970 5.39762 5.44289 5.49944 5.50302 5.56003 5.60357 5.67728 5.77876 5.79060 5.83884 5.85042 5.90910 5.96955 6.14359 6.25052 6.30134 6.40951 6.53900 6.56897 7.38828 7.76168 7.97402 8.10439 8.39856 9.19410 9.91299 10.11099 11.39367 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.025774 B = 0.002304 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.096392 B =12148.072956 C =13081.243924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.050 4.050 3 C -0.130 4.130 4 C -0.081 4.081 5 C -0.130 4.130 6 C 0.555 3.445 7 O -0.537 6.537 8 N -0.719 5.719 9 C 0.091 3.909 10 C 0.085 3.915 11 H 0.104 0.896 12 O -0.557 6.557 13 C 0.131 3.869 14 N -0.749 5.749 15 C -0.248 4.248 16 H 0.090 0.910 17 C 0.005 3.995 18 N -0.933 5.933 19 Si 0.888 3.112 20 H -0.284 1.284 21 H -0.292 1.292 22 H -0.277 1.277 23 C -0.028 4.028 24 C -0.111 4.111 25 C -0.078 4.078 26 C -0.124 4.124 27 C -0.081 4.081 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.403 0.597 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.377 0.623 37 H 0.032 0.968 38 H 0.038 0.962 39 H 0.366 0.634 40 H 0.260 0.740 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.090 0.910 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.783 -15.905 1.026 33.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.050 4.050 3 C -0.148 4.148 4 C -0.100 4.100 5 C -0.133 4.133 6 C 0.343 3.657 7 O -0.415 6.415 8 N -0.371 5.371 9 C -0.033 4.033 10 C 0.025 3.975 11 H 0.122 0.878 12 O -0.362 6.362 13 C 0.003 3.997 14 N -0.396 5.396 15 C -0.378 4.378 16 H 0.107 0.893 17 C -0.191 4.191 18 N -0.581 5.581 19 Si 0.719 3.281 20 H -0.210 1.210 21 H -0.218 1.218 22 H -0.203 1.203 23 C -0.029 4.029 24 C -0.111 4.111 25 C -0.115 4.115 26 C -0.161 4.161 27 C -0.118 4.118 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.239 0.761 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.224 0.776 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.200 0.800 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.108 0.892 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -29.364 -16.287 0.589 33.583 hybrid contribution -0.534 1.331 0.441 1.500 sum -29.898 -14.956 1.030 33.446 Atomic orbital electron populations 1.20845 0.91028 1.03013 1.02575 1.19654 0.96139 0.91831 0.97381 1.20872 0.93832 0.97529 1.02590 1.21238 0.94550 0.96795 0.97401 1.19524 0.92652 0.93229 1.07882 1.18304 0.87075 0.83830 0.76499 1.90753 1.69793 1.31122 1.49833 1.45860 1.07518 1.08605 1.75115 1.22094 0.79398 0.98322 1.03502 1.22450 0.96128 0.90777 0.88165 0.87830 1.86535 1.76437 1.57679 1.15580 1.21165 0.90046 0.88763 0.99757 1.42559 1.05328 1.01219 1.90470 1.19043 0.82021 0.93654 1.43060 0.89252 1.24682 0.95646 0.96997 1.01781 1.69709 1.11786 1.19490 1.57068 0.86486 0.80860 0.82883 0.77899 1.21013 1.21803 1.20292 1.20577 0.93507 0.94482 0.94333 1.20437 0.93679 0.94848 1.02171 1.21030 0.98457 0.90029 1.02021 1.22364 0.93901 0.98273 1.01591 1.21117 0.98329 0.89140 1.03181 0.90824 0.91281 0.91321 0.85182 0.85251 0.76141 0.90759 0.90138 0.77564 0.94981 0.94466 0.80026 0.93009 0.90674 0.90163 0.90935 0.90376 0.89181 0.89767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 9.86 36.01 0.35 -0.28 16 2 C -0.05 -0.41 5.89 -104.48 -0.62 -1.02 16 3 C -0.13 -1.07 9.67 -39.68 -0.38 -1.45 16 4 C -0.08 -0.76 9.54 -39.23 -0.37 -1.13 16 5 C -0.13 -1.49 5.88 -104.92 -0.62 -2.11 16 6 C 0.56 7.35 7.77 -12.33 -0.10 7.26 16 7 O -0.54 -8.59 14.70 5.32 0.08 -8.52 16 8 N -0.72 -8.40 5.45 -61.25 -0.33 -8.74 16 9 C 0.09 1.14 5.31 -4.04 -0.02 1.12 16 10 C 0.08 1.20 3.09 -26.73 -0.08 1.12 16 11 H 0.10 1.48 8.14 -51.92 -0.42 1.06 16 12 O -0.56 -8.02 13.03 -35.23 -0.46 -8.48 16 13 C 0.13 2.40 5.92 -4.04 -0.02 2.38 16 14 N -0.75 -17.73 5.30 -59.91 -0.32 -18.05 16 15 C -0.25 -7.06 10.47 -15.06 -0.16 -7.22 16 16 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 17 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 18 N -0.93 -29.47 13.97 55.49 0.78 -28.69 16 19 Si 0.89 22.44 27.74 -169.99 -4.71 17.72 16 20 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 22 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 23 C -0.03 -0.31 6.03 -103.82 -0.63 -0.93 16 24 C -0.11 -1.01 6.00 -104.24 -0.63 -1.64 16 25 C -0.08 -0.53 6.26 -26.84 -0.17 -0.70 16 26 C -0.12 -0.87 7.08 -25.33 -0.18 -1.05 16 27 C -0.08 -0.81 5.58 -26.86 -0.15 -0.96 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 30 H 0.07 0.32 7.27 -51.93 -0.38 -0.06 16 31 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.13 0.97 6.40 -52.49 -0.34 0.64 16 33 H 0.40 4.03 6.50 -40.82 -0.27 3.77 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.38 4.50 9.05 45.56 0.41 4.91 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.37 8.63 5.41 -40.82 -0.22 8.41 16 40 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 41 H 0.07 0.41 7.60 -51.93 -0.39 0.01 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.09 1.04 7.19 -51.93 -0.37 0.67 16 46 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 374.10 15.07 5.64 5.64 Total: -1.00 -34.83 374.10 -9.41 -44.24 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -6.22 Total: 11.44 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -3.86 Total: -6.56 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.12 Total: -55.48 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.38 Total: -17.00 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.71 Total: 17.72 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.83 -9.41 -44.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699071974.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.146 kcal (2) G-P(sol) polarization free energy of solvation -34.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds