Wall clock time and date at job start Tue Mar 31 2020 12:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38263 * 119.73244 * 2 1 4 4 C 1.37934 * 120.09320 * 179.76237 * 3 2 1 5 5 C 1.39492 * 119.76673 * 0.47068 * 4 3 2 6 6 C 1.47849 * 120.03993 * 179.78045 * 5 4 3 7 7 O 1.21553 * 119.99954 * 179.72577 * 6 5 4 8 8 N 1.34777 * 119.99699 * 0.02562 * 6 5 4 9 9 C 1.46505 * 119.99724 * 179.72334 * 8 6 5 10 10 C 1.52999 * 109.47192 * 180.02562 * 9 8 6 11 11 H 1.09008 * 109.46756 * 304.99967 * 10 9 8 12 12 O 1.42895 * 109.47498 * 64.99545 * 10 9 8 13 13 C 1.53001 * 109.47159 * 185.00359 * 10 9 8 14 14 N 1.46501 * 109.46928 * 179.97438 * 13 10 9 15 15 C 1.36931 * 119.99947 * 179.97438 * 14 13 10 16 16 H 1.08001 * 120.00093 * 359.97438 * 15 14 13 17 17 C 1.38819 * 120.00328 * 180.02562 * 15 14 13 18 18 N 1.31613 * 119.99886 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99729 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46971 * 90.00539 * 19 17 15 21 21 H 1.48497 * 109.47157 * 210.00376 * 19 17 15 22 22 H 1.48498 * 109.47408 * 330.01038 * 19 17 15 23 23 C 1.39774 * 119.91678 * 359.50949 * 5 4 3 24 24 C 1.37976 * 119.76116 * 0.25159 * 23 5 4 25 25 C 1.51402 * 109.75730 * 180.02562 * 24 23 5 26 26 C 1.54342 * 105.17244 * 342.81658 * 25 24 23 27 27 C 1.51350 * 130.40825 * 180.24902 * 23 5 4 28 28 H 1.09003 * 109.47212 * 270.02295 * 1 2 3 29 29 H 1.08993 * 109.47611 * 30.02766 * 1 2 3 30 30 H 1.09007 * 109.47143 * 150.02961 * 1 2 3 31 31 H 1.07996 * 119.95293 * 359.97438 * 3 2 1 32 32 H 1.08001 * 120.11604 * 180.25643 * 4 3 2 33 33 H 0.97000 * 120.00483 * 359.72766 * 8 6 5 34 34 H 1.09003 * 109.46699 * 299.99993 * 9 8 6 35 35 H 1.08993 * 109.47199 * 60.00006 * 9 8 6 36 36 H 0.96701 * 113.99770 * 60.00567 * 12 10 9 37 37 H 1.09001 * 109.46338 * 299.99346 * 13 10 9 38 38 H 1.08994 * 109.47214 * 59.99089 * 13 10 9 39 39 H 0.96998 * 120.00146 * 359.97438 * 14 13 10 40 40 H 0.97007 * 119.99598 * 179.97438 * 18 17 15 41 41 H 1.08994 * 110.30241 * 223.88764 * 25 24 23 42 42 H 1.08998 * 110.29823 * 101.73989 * 25 24 23 43 43 H 1.08997 * 110.83118 * 268.09637 * 26 25 24 44 44 H 1.08998 * 110.99972 * 144.60379 * 26 25 24 45 45 H 1.09003 * 110.30473 * 316.08972 * 27 23 5 46 46 H 1.09005 * 110.30721 * 78.24873 * 27 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1927 1.2006 0.0000 4 6 3.5720 1.2093 0.0049 5 6 4.2722 0.0028 0.0000 6 6 5.7507 0.0051 0.0004 7 8 6.3601 -1.0466 0.0011 8 7 6.4227 1.1734 0.0060 9 6 7.8877 1.1757 0.0125 10 6 8.3955 2.6189 0.0186 11 1 7.9637 3.1596 -0.8237 12 8 8.0110 3.2540 1.2396 13 6 9.9209 2.6234 -0.1004 14 7 10.4070 4.0054 -0.0951 15 6 11.7490 4.2595 -0.1915 16 1 12.4493 3.4411 -0.2710 17 6 12.2098 5.5690 -0.1860 18 7 13.4997 5.8131 -0.2791 19 14 10.9988 6.9845 -0.0477 20 1 10.7860 7.3158 1.3842 21 1 11.5423 8.1718 -0.7549 22 1 9.7054 6.5913 -0.6622 23 6 3.5743 -1.2082 0.0004 24 6 2.1945 -1.2035 0.0005 25 6 1.6780 -2.6267 0.0016 26 6 2.8778 -3.4923 -0.4378 27 6 4.0829 -2.6337 0.0008 28 1 -0.3634 0.0004 1.0277 29 1 -0.3634 0.8896 -0.5142 30 1 -0.3634 -0.8903 -0.5134 31 1 1.6476 2.1329 -0.0004 32 1 4.1080 2.1469 0.0091 33 1 5.9364 2.0127 0.0058 34 1 8.2479 0.6603 0.9029 35 1 8.2558 0.6645 -0.8770 36 1 8.3604 2.8253 2.0329 37 1 10.3525 2.0828 0.7419 38 1 10.2140 2.1390 -1.0317 39 1 9.7782 4.7405 -0.0233 40 1 13.8216 6.7282 -0.2756 41 1 0.8564 -2.7314 -0.7069 42 1 1.3535 -2.9104 1.0028 43 1 2.8773 -3.6357 -1.5183 44 1 2.8771 -4.4521 0.0788 45 1 4.9037 -2.7426 -0.7082 46 1 4.4063 -2.9197 1.0018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699071974.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:15 Heat of formation + Delta-G solvation = -85.692536 kcal Electronic energy + Delta-G solvation = -25850.123289 eV Core-core repulsion = 22124.061751 eV Total energy + Delta-G solvation = -3726.061538 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.70025 -40.25638 -38.94289 -36.85431 -36.19778 -35.32763 -34.05708 -33.48285 -31.01043 -30.06056 -28.88267 -28.31506 -26.69187 -24.23636 -23.45998 -22.90075 -22.36412 -21.76473 -20.79751 -19.79476 -18.66096 -17.70072 -17.28954 -17.01725 -16.66562 -16.54953 -16.06374 -15.87178 -15.77895 -15.43495 -15.33633 -14.95498 -14.51957 -14.37586 -14.28235 -14.11724 -14.03271 -13.67789 -13.39947 -13.22784 -13.09226 -12.94759 -12.82265 -12.62001 -12.31879 -12.24064 -12.12420 -11.93900 -11.89808 -11.84588 -11.76683 -11.19984 -11.03536 -10.82197 -10.25025 -9.58811 -9.52696 -9.33629 -8.04886 -5.38909 -0.17690 0.34857 1.38819 1.42027 1.49455 1.79673 2.03456 2.47526 2.77925 3.25316 3.30294 3.41776 3.49489 3.60203 3.70934 3.91103 3.96323 4.06521 4.12068 4.14449 4.15640 4.18688 4.34595 4.48290 4.56693 4.68990 4.71792 4.75215 4.84159 4.88292 4.90013 4.92882 5.00595 5.08055 5.13766 5.15794 5.25106 5.28588 5.30992 5.33393 5.47901 5.60714 5.72126 5.94539 6.18481 6.45351 6.72209 7.05945 7.13175 7.80900 8.00762 9.16338 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.025774 B = 0.002304 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.096392 B =12148.072956 C =13081.243924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.050 4.050 3 C -0.133 4.133 4 C -0.084 4.084 5 C -0.155 4.155 6 C 0.552 3.448 7 O -0.574 6.574 8 N -0.709 5.709 9 C 0.101 3.899 10 C 0.107 3.893 11 H 0.110 0.890 12 O -0.562 6.562 13 C 0.124 3.876 14 N -0.752 5.752 15 C -0.239 4.239 16 H 0.056 0.944 17 C -0.065 4.065 18 N -0.983 5.983 19 Si 0.961 3.039 20 H -0.279 1.279 21 H -0.295 1.295 22 H -0.252 1.252 23 C -0.054 4.054 24 C -0.118 4.118 25 C -0.075 4.075 26 C -0.118 4.118 27 C -0.083 4.083 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.156 0.844 32 H 0.145 0.855 33 H 0.413 0.587 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.388 0.612 37 H 0.035 0.965 38 H 0.038 0.962 39 H 0.370 0.630 40 H 0.259 0.741 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.074 0.926 44 H 0.094 0.906 45 H 0.064 0.936 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.869 -15.382 1.231 37.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.051 4.051 3 C -0.150 4.150 4 C -0.102 4.102 5 C -0.158 4.158 6 C 0.341 3.659 7 O -0.455 6.455 8 N -0.361 5.361 9 C -0.024 4.024 10 C 0.047 3.953 11 H 0.128 0.872 12 O -0.370 6.370 13 C -0.003 4.003 14 N -0.398 5.398 15 C -0.369 4.369 16 H 0.074 0.926 17 C -0.256 4.256 18 N -0.633 5.633 19 Si 0.788 3.212 20 H -0.205 1.205 21 H -0.222 1.222 22 H -0.177 1.177 23 C -0.055 4.055 24 C -0.118 4.118 25 C -0.111 4.111 26 C -0.155 4.155 27 C -0.120 4.120 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.174 0.826 32 H 0.163 0.837 33 H 0.250 0.750 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.237 0.763 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.203 0.797 40 H 0.067 0.933 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.093 0.907 44 H 0.112 0.888 45 H 0.083 0.917 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -33.503 -15.784 0.803 37.043 hybrid contribution 0.747 1.065 0.391 1.359 sum -32.755 -14.718 1.194 35.930 Atomic orbital electron populations 1.20915 0.88760 1.04133 1.03510 1.20073 0.97844 0.91423 0.95713 1.21241 0.93460 0.98763 1.01582 1.21450 0.95331 0.96509 0.96938 1.19552 0.91506 0.94541 1.10242 1.18684 0.88037 0.83463 0.75685 1.90729 1.70684 1.32382 1.51727 1.45724 1.07000 1.08823 1.74573 1.21876 0.80057 0.97072 1.03355 1.22136 0.92929 0.91694 0.88579 0.87182 1.86513 1.76359 1.58075 1.16004 1.21379 0.93145 0.86030 0.99746 1.42526 1.03466 1.03506 1.90334 1.19037 0.83790 0.92797 1.41320 0.92559 1.25547 0.97554 1.00084 1.02439 1.69890 1.14193 1.19998 1.59226 0.85324 0.79174 0.78689 0.78018 1.20494 1.22214 1.17701 1.20838 0.94774 0.94544 0.95378 1.20771 0.92924 0.96423 1.01712 1.21082 0.98503 0.88378 1.03180 1.22370 0.92681 0.98578 1.01902 1.21098 0.98887 0.89991 1.01993 0.89801 0.90038 0.90413 0.82603 0.83745 0.74952 0.90831 0.90568 0.76258 0.94667 0.94435 0.79654 0.93253 0.88802 0.89009 0.90718 0.88765 0.91708 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 9.86 71.24 0.70 -0.14 16 2 C -0.05 -0.69 5.89 -19.77 -0.12 -0.81 16 3 C -0.13 -1.82 9.67 22.20 0.21 -1.60 16 4 C -0.08 -1.42 9.54 22.50 0.21 -1.21 16 5 C -0.16 -3.53 5.88 -20.06 -0.12 -3.65 16 6 C 0.55 14.75 7.77 86.79 0.67 15.43 16 7 O -0.57 -19.14 14.70 -3.88 -0.06 -19.19 16 8 N -0.71 -15.92 5.45 -465.96 -2.54 -18.46 16 9 C 0.10 2.45 5.31 86.38 0.46 2.91 16 10 C 0.11 2.83 3.09 30.59 0.09 2.93 16 11 H 0.11 2.86 8.14 -2.38 -0.02 2.84 16 12 O -0.56 -14.84 13.03 -148.98 -1.94 -16.78 16 13 C 0.12 4.44 5.92 86.38 0.51 4.95 16 14 N -0.75 -34.78 5.30 -343.45 -1.82 -36.60 16 15 C -0.24 -13.71 10.47 84.04 0.88 -12.83 16 16 H 0.06 3.54 8.06 -2.91 -0.02 3.51 16 17 C -0.06 -3.84 5.50 84.86 0.47 -3.38 16 18 N -0.98 -63.47 13.97 21.65 0.30 -63.16 16 19 Si 0.96 46.01 27.74 68.60 1.90 47.91 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 22 H -0.25 -10.94 6.52 99.48 0.65 -10.29 16 23 C -0.05 -1.19 6.03 -19.35 -0.12 -1.30 16 24 C -0.12 -1.96 6.00 -19.61 -0.12 -2.08 16 25 C -0.07 -0.84 6.26 30.53 0.19 -0.65 16 26 C -0.12 -1.55 7.08 31.50 0.22 -1.33 16 27 C -0.08 -1.72 5.58 30.51 0.17 -1.55 16 28 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.08 0.41 8.08 -2.39 -0.02 0.39 16 30 H 0.08 0.44 7.27 -2.38 -0.02 0.42 16 31 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 32 H 0.14 1.85 6.40 -2.91 -0.02 1.84 16 33 H 0.41 7.53 6.50 -92.71 -0.60 6.93 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.39 8.43 9.05 -74.06 -0.67 7.76 16 37 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.37 16.55 5.41 -92.71 -0.50 16.05 16 40 H 0.26 15.87 8.31 -92.70 -0.77 15.10 16 41 H 0.09 0.72 7.60 -2.39 -0.02 0.70 16 42 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.06 1.63 7.19 -2.39 -0.02 1.61 16 46 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -76.77 374.10 -0.63 -77.40 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: -0.81 Total: 33.19 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 4.33 Total: -4.31 kcal Atomic # 7 Polarization: -114.17 SS G_CDS: -4.06 Total: -118.23 kcal Atomic # 8 Polarization: -33.98 SS G_CDS: -2.00 Total: -35.98 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.90 Total: 47.91 kcal Total: -76.77 -0.63 -77.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699071974.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.289 kcal (2) G-P(sol) polarization free energy of solvation -76.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds