Wall clock time and date at job start Tue Mar 31 2020 12:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00139 * 2 1 4 4 H 1.48495 * 109.46958 * 270.00064 * 3 2 1 5 5 H 1.48498 * 109.46855 * 30.00169 * 3 2 1 6 6 H 1.48495 * 109.46972 * 149.99744 * 3 2 1 7 7 C 1.38809 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00288 * 197.85297 * 7 2 1 9 9 N 1.36936 * 120.00080 * 17.85209 * 7 2 1 10 10 C 1.46846 * 120.38597 * 208.90643 * 9 7 2 11 11 C 1.53347 * 108.81710 * 236.88412 * 10 9 7 12 12 C 1.53179 * 108.76812 * 308.68647 * 11 10 9 13 13 C 1.52843 * 117.65390 * 269.96930 * 12 11 10 14 14 C 1.52821 * 117.71581 * 201.11325 * 12 11 10 15 15 H 1.08995 * 117.53154 * 215.08640 * 14 12 11 16 16 N 1.46505 * 117.49831 * 0.13671 * 14 12 11 17 17 C 1.34771 * 119.99925 * 204.97438 * 16 14 12 18 18 O 1.21288 * 119.99852 * 359.97438 * 17 16 14 19 19 C 1.50695 * 120.00202 * 180.02562 * 17 16 14 20 20 C 1.53003 * 109.47341 * 179.97438 * 19 17 16 21 21 C 1.50706 * 109.47018 * 179.97438 * 20 19 17 22 22 C 1.41379 * 126.57823 * 90.00282 * 21 20 19 23 23 C 1.34508 * 106.84040 * 179.97438 * 22 21 20 24 24 O 1.34308 * 108.42298 * 359.97438 * 23 22 21 25 25 C 1.34304 * 109.47429 * 359.77375 * 24 23 22 26 26 C 1.53183 * 115.08116 * 55.44169 * 12 11 10 27 27 C 1.46839 * 120.38439 * 28.88873 * 9 7 2 28 28 H 0.97003 * 120.00343 * 359.97438 * 1 2 3 29 29 H 1.09009 * 109.58059 * 117.08291 * 10 9 7 30 30 H 1.09003 * 109.57751 * 356.68609 * 10 9 7 31 31 H 1.09004 * 109.59254 * 188.89774 * 11 10 9 32 32 H 1.08998 * 109.58369 * 68.46865 * 11 10 9 33 33 H 1.09004 * 117.50295 * 144.81118 * 13 12 11 34 34 H 1.08992 * 117.53374 * 359.75420 * 13 12 11 35 35 H 0.96997 * 120.00085 * 24.97833 * 16 14 12 36 36 H 1.09004 * 109.47143 * 60.00106 * 19 17 16 37 37 H 1.08997 * 109.47301 * 299.99951 * 19 17 16 38 38 H 1.09004 * 109.46722 * 60.00085 * 20 19 17 39 39 H 1.08994 * 109.47378 * 299.99902 * 20 19 17 40 40 H 1.07994 * 126.58223 * 0.02562 * 22 21 20 41 41 H 1.07994 * 125.79474 * 180.02562 * 23 22 21 42 42 H 1.07995 * 125.79224 * 180.23330 * 25 24 23 43 43 H 1.09006 * 109.58660 * 64.34487 * 26 12 11 44 44 H 1.08994 * 109.59225 * 184.77570 * 26 12 11 45 45 H 1.09000 * 109.58214 * 242.91988 * 27 9 7 46 46 H 1.09002 * 109.57930 * 3.32040 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0512 -1.2249 0.2862 9 7 1.3749 -2.3593 -0.3646 10 6 1.8050 -3.6490 0.1904 11 6 2.1665 -4.5893 -0.9658 12 6 1.0057 -4.6104 -1.9651 13 6 -0.0885 -5.6574 -1.7593 14 6 0.9058 -5.8047 -2.9132 15 1 0.5377 -5.6178 -3.9219 16 7 1.9275 -6.8483 -2.7967 17 6 2.2154 -7.6307 -3.8556 18 8 1.6283 -7.4712 -4.9049 19 6 3.2659 -8.7044 -3.7357 20 6 3.3962 -9.4419 -5.0699 21 6 4.4472 -10.5153 -4.9501 22 6 4.2407 -11.8559 -4.5514 23 6 5.4413 -12.4615 -4.5840 24 8 6.3588 -11.5640 -4.9795 25 6 5.7608 -10.3833 -5.2081 26 6 0.5853 -3.2384 -2.5011 27 6 0.2555 -2.3249 -1.3143 28 1 -0.4851 0.8400 0.0004 29 1 0.9941 -4.0838 0.7750 30 1 2.6775 -3.5001 0.8267 31 1 2.3351 -5.5948 -0.5802 32 1 3.0684 -4.2295 -1.4609 33 1 -1.1108 -5.3730 -2.0090 34 1 0.0171 -6.3371 -0.9139 35 1 2.3967 -6.9761 -1.9575 36 1 2.9764 -9.4107 -2.9574 37 1 4.2221 -8.2500 -3.4765 38 1 3.6854 -8.7359 -5.8484 39 1 2.4400 -9.8965 -5.3287 40 1 3.2995 -12.3073 -4.2747 41 1 5.6346 -13.4944 -4.3351 42 1 6.2517 -9.4804 -5.5399 43 1 1.4021 -2.8059 -3.0791 44 1 -0.2953 -3.3474 -3.1341 45 1 -0.6513 -2.6776 -0.8230 46 1 0.1082 -1.3046 -1.6685 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752420118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:17 Heat of formation + Delta-G solvation = 14.720690 kcal Electronic energy + Delta-G solvation = -25890.129171 eV Core-core repulsion = 22168.421877 eV Total energy + Delta-G solvation = -3721.707294 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.84865 -40.01308 -38.47868 -35.57109 -35.02321 -33.14933 -31.82833 -31.42428 -30.03116 -29.43177 -28.25332 -25.18654 -24.34775 -22.48051 -21.96567 -21.89371 -20.90241 -20.43196 -20.17848 -18.22405 -17.86837 -17.05387 -16.45388 -16.25439 -15.92214 -15.73401 -15.01513 -14.81152 -14.16704 -14.11218 -13.87320 -13.52853 -13.38040 -13.17339 -13.11596 -12.78353 -12.62489 -12.51050 -12.26897 -12.19808 -11.64656 -11.59081 -11.32741 -11.19214 -10.96295 -10.75100 -10.43895 -10.32437 -10.10478 -9.96488 -9.85908 -9.68141 -9.61506 -9.34821 -8.84897 -8.45669 -8.44883 -6.65097 -5.79420 -3.22880 1.45421 2.25360 2.57024 2.84059 3.14063 3.37461 3.44624 3.45411 4.18188 4.43921 4.48918 4.49579 4.65040 4.81818 4.94993 4.98531 4.99140 5.13963 5.14948 5.33674 5.38488 5.39053 5.45984 5.49175 5.63341 5.75645 5.86476 5.87888 5.94581 6.06250 6.06432 6.10491 6.20686 6.28405 6.43193 6.58306 6.61174 6.64143 6.69447 6.80421 6.83111 6.95518 7.36341 7.50362 7.66815 7.79086 8.21007 8.45930 9.21184 9.84733 10.41321 11.28243 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024447 B = 0.002159 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.060401 B =12966.042464 C =13489.196195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.064 0.936 9 N -0.589 5.589 10 C 0.150 3.850 11 C -0.097 4.097 12 C -0.096 4.096 13 C -0.183 4.183 14 C 0.068 3.932 15 H 0.131 0.869 16 N -0.697 5.697 17 C 0.513 3.487 18 O -0.545 6.545 19 C -0.134 4.134 20 C -0.034 4.034 21 C -0.178 4.178 22 C -0.209 4.209 23 C -0.044 4.044 24 O -0.179 6.179 25 C -0.040 4.040 26 C -0.106 4.106 27 C 0.173 3.827 28 H 0.254 0.746 29 H 0.019 0.981 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.401 0.599 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.147 0.853 41 H 0.201 0.799 42 H 0.202 0.798 43 H 0.060 0.940 44 H 0.051 0.949 45 H 0.018 0.982 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.714 -22.548 -7.321 24.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.023 3.977 11 C -0.136 4.136 12 C -0.098 4.098 13 C -0.221 4.221 14 C -0.038 4.038 15 H 0.149 0.851 16 N -0.346 5.346 17 C 0.300 3.700 18 O -0.422 6.422 19 C -0.174 4.174 20 C -0.072 4.072 21 C -0.180 4.180 22 C -0.228 4.228 23 C -0.112 4.112 24 O -0.074 6.074 25 C -0.107 4.107 26 C -0.145 4.145 27 C 0.047 3.953 28 H 0.064 0.936 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.236 0.764 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.165 0.835 41 H 0.218 0.782 42 H 0.219 0.781 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.036 0.964 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.497 -22.343 -8.086 24.916 hybrid contribution 0.321 0.728 0.577 0.983 sum 7.818 -21.615 -7.509 24.181 Atomic orbital electron populations 1.70033 1.05276 1.25530 1.53669 1.25054 0.95264 0.98469 1.00858 0.86302 0.79133 0.83693 0.77717 1.21422 1.21792 1.20447 1.19192 0.92831 0.85049 1.41251 0.91785 1.43977 1.37848 1.01470 1.47870 1.20841 0.97376 0.87072 0.92432 1.21622 0.96220 0.98591 0.97185 1.21947 0.97954 0.91263 0.98618 1.23519 0.96164 1.02657 0.99801 1.21909 0.93257 0.91539 0.97061 0.85117 1.45456 1.40110 1.34475 1.14561 1.20664 0.83585 0.82175 0.83546 1.90694 1.52617 1.70516 1.28377 1.21652 0.98768 0.96836 1.00172 1.19683 0.96965 0.94300 0.96237 1.20515 0.95018 0.95968 1.06477 1.21790 0.99169 0.94421 1.07413 1.24027 0.87261 0.95405 1.04488 1.84076 1.37959 1.19148 1.66264 1.23946 0.92576 0.88403 1.05784 1.21880 0.99681 0.93114 0.99852 1.20768 0.88778 0.98711 0.87054 0.93615 0.96329 0.92750 0.93648 0.91788 0.88390 0.89119 0.76425 0.88837 0.88800 0.90211 0.90128 0.83476 0.78240 0.78140 0.92138 0.93023 0.96360 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 11.23 55.49 0.62 -25.32 16 2 C 0.00 0.06 4.88 -17.43 -0.09 -0.02 16 3 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.25 -6.86 9.54 -15.06 -0.14 -7.01 16 8 H 0.06 1.71 7.89 -52.48 -0.41 1.29 16 9 N -0.59 -14.48 2.94 -172.25 -0.51 -14.98 16 10 C 0.15 3.02 6.51 -3.67 -0.02 3.00 16 11 C -0.10 -1.57 5.37 -26.46 -0.14 -1.71 16 12 C -0.10 -1.57 1.94 -154.49 -0.30 -1.87 16 13 C -0.18 -2.63 9.86 -26.80 -0.26 -2.90 16 14 C 0.07 0.98 6.14 -68.00 -0.42 0.57 16 15 H 0.13 2.08 7.40 -51.93 -0.38 1.70 16 16 N -0.70 -8.42 5.35 -53.88 -0.29 -8.71 16 17 C 0.51 6.36 7.83 -10.99 -0.09 6.28 16 18 O -0.54 -8.84 15.55 5.55 0.09 -8.75 16 19 C -0.13 -1.15 5.68 -27.88 -0.16 -1.31 16 20 C -0.03 -0.31 5.02 -27.88 -0.14 -0.45 16 21 C -0.18 -1.53 5.42 -104.74 -0.57 -2.10 16 22 C -0.21 -1.63 10.87 -39.71 -0.43 -2.07 16 23 C -0.04 -0.31 12.09 29.41 0.36 0.05 16 24 O -0.18 -1.54 10.65 5.69 0.06 -1.48 16 25 C -0.04 -0.31 12.01 29.42 0.35 0.04 16 26 C -0.11 -2.01 5.83 -26.45 -0.15 -2.16 16 27 C 0.17 4.05 5.40 -3.67 -0.02 4.03 16 28 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.05 1.08 7.92 -51.93 -0.41 0.67 16 31 H 0.04 0.59 6.75 -51.93 -0.35 0.24 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.40 3.99 7.12 -40.82 -0.29 3.70 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.77 8.10 -51.93 -0.42 0.34 16 39 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 40 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.20 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.20 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.05 0.89 8.10 -51.93 -0.42 0.47 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.09 2.39 5.93 -51.93 -0.31 2.08 16 LS Contribution 375.95 15.07 5.67 5.67 Total: -1.00 -32.40 375.95 -8.82 -41.22 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -7.21 Total: 3.47 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -2.22 Total: -7.64 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: -0.17 Total: -49.01 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.15 Total: -10.23 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.40 -8.82 -41.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752420118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.941 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds