Wall clock time and date at job start Tue Mar 31 2020 12:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00139 * 2 1 4 4 H 1.48495 * 109.46958 * 270.00064 * 3 2 1 5 5 H 1.48498 * 109.46855 * 30.00169 * 3 2 1 6 6 H 1.48495 * 109.46972 * 149.99744 * 3 2 1 7 7 C 1.38809 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00288 * 197.85297 * 7 2 1 9 9 N 1.36936 * 120.00080 * 17.85209 * 7 2 1 10 10 C 1.46846 * 120.38597 * 208.90643 * 9 7 2 11 11 C 1.53347 * 108.81710 * 236.88412 * 10 9 7 12 12 C 1.53179 * 108.76812 * 308.68647 * 11 10 9 13 13 C 1.52843 * 117.65390 * 269.96930 * 12 11 10 14 14 C 1.52821 * 117.71581 * 201.11325 * 12 11 10 15 15 H 1.08995 * 117.53154 * 215.08640 * 14 12 11 16 16 N 1.46505 * 117.49831 * 0.13671 * 14 12 11 17 17 C 1.34771 * 119.99925 * 204.97438 * 16 14 12 18 18 O 1.21288 * 119.99852 * 359.97438 * 17 16 14 19 19 C 1.50695 * 120.00202 * 180.02562 * 17 16 14 20 20 C 1.53003 * 109.47341 * 179.97438 * 19 17 16 21 21 C 1.50706 * 109.47018 * 179.97438 * 20 19 17 22 22 C 1.41379 * 126.57823 * 90.00282 * 21 20 19 23 23 C 1.34508 * 106.84040 * 179.97438 * 22 21 20 24 24 O 1.34308 * 108.42298 * 359.97438 * 23 22 21 25 25 C 1.34304 * 109.47429 * 359.77375 * 24 23 22 26 26 C 1.53183 * 115.08116 * 55.44169 * 12 11 10 27 27 C 1.46839 * 120.38439 * 28.88873 * 9 7 2 28 28 H 0.97003 * 120.00343 * 359.97438 * 1 2 3 29 29 H 1.09009 * 109.58059 * 117.08291 * 10 9 7 30 30 H 1.09003 * 109.57751 * 356.68609 * 10 9 7 31 31 H 1.09004 * 109.59254 * 188.89774 * 11 10 9 32 32 H 1.08998 * 109.58369 * 68.46865 * 11 10 9 33 33 H 1.09004 * 117.50295 * 144.81118 * 13 12 11 34 34 H 1.08992 * 117.53374 * 359.75420 * 13 12 11 35 35 H 0.96997 * 120.00085 * 24.97833 * 16 14 12 36 36 H 1.09004 * 109.47143 * 60.00106 * 19 17 16 37 37 H 1.08997 * 109.47301 * 299.99951 * 19 17 16 38 38 H 1.09004 * 109.46722 * 60.00085 * 20 19 17 39 39 H 1.08994 * 109.47378 * 299.99902 * 20 19 17 40 40 H 1.07994 * 126.58223 * 0.02562 * 22 21 20 41 41 H 1.07994 * 125.79474 * 180.02562 * 23 22 21 42 42 H 1.07995 * 125.79224 * 180.23330 * 25 24 23 43 43 H 1.09006 * 109.58660 * 64.34487 * 26 12 11 44 44 H 1.08994 * 109.59225 * 184.77570 * 26 12 11 45 45 H 1.09000 * 109.58214 * 242.91988 * 27 9 7 46 46 H 1.09002 * 109.57930 * 3.32040 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0512 -1.2249 0.2862 9 7 1.3749 -2.3593 -0.3646 10 6 1.8050 -3.6490 0.1904 11 6 2.1665 -4.5893 -0.9658 12 6 1.0057 -4.6104 -1.9651 13 6 -0.0885 -5.6574 -1.7593 14 6 0.9058 -5.8047 -2.9132 15 1 0.5377 -5.6178 -3.9219 16 7 1.9275 -6.8483 -2.7967 17 6 2.2154 -7.6307 -3.8556 18 8 1.6283 -7.4712 -4.9049 19 6 3.2659 -8.7044 -3.7357 20 6 3.3962 -9.4419 -5.0699 21 6 4.4472 -10.5153 -4.9501 22 6 4.2407 -11.8559 -4.5514 23 6 5.4413 -12.4615 -4.5840 24 8 6.3588 -11.5640 -4.9795 25 6 5.7608 -10.3833 -5.2081 26 6 0.5853 -3.2384 -2.5011 27 6 0.2555 -2.3249 -1.3143 28 1 -0.4851 0.8400 0.0004 29 1 0.9941 -4.0838 0.7750 30 1 2.6775 -3.5001 0.8267 31 1 2.3351 -5.5948 -0.5802 32 1 3.0684 -4.2295 -1.4609 33 1 -1.1108 -5.3730 -2.0090 34 1 0.0171 -6.3371 -0.9139 35 1 2.3967 -6.9761 -1.9575 36 1 2.9764 -9.4107 -2.9574 37 1 4.2221 -8.2500 -3.4765 38 1 3.6854 -8.7359 -5.8484 39 1 2.4400 -9.8965 -5.3287 40 1 3.2995 -12.3073 -4.2747 41 1 5.6346 -13.4944 -4.3351 42 1 6.2517 -9.4804 -5.5399 43 1 1.4021 -2.8059 -3.0791 44 1 -0.2953 -3.3474 -3.1341 45 1 -0.6513 -2.6776 -0.8230 46 1 0.1082 -1.3046 -1.6685 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752420118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:16 Heat of formation + Delta-G solvation = -4.436842 kcal Electronic energy + Delta-G solvation = -25890.959904 eV Core-core repulsion = 22168.421877 eV Total energy + Delta-G solvation = -3722.538027 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.40495 -41.12746 -39.76226 -37.15704 -35.75355 -34.48016 -33.38017 -32.27756 -31.63128 -30.19110 -29.75437 -26.27863 -25.91282 -24.06050 -23.17476 -22.44432 -22.34423 -21.39980 -20.92648 -19.79626 -18.61269 -18.34377 -17.70142 -17.26786 -16.81850 -16.66424 -16.56849 -15.77383 -15.52300 -15.37535 -15.14218 -14.88525 -14.77976 -14.60651 -14.15051 -13.78329 -13.63078 -13.39385 -13.30411 -13.15126 -13.08641 -12.94048 -12.86694 -12.59535 -12.49528 -12.25079 -11.99820 -11.86757 -11.78345 -11.37677 -11.26493 -11.02178 -10.71168 -10.50809 -10.46225 -9.63991 -9.39831 -8.62222 -7.85915 -5.32240 0.91377 1.46274 1.48367 1.56492 1.60110 1.67201 2.16286 2.37650 2.51605 2.96010 3.28766 3.63539 3.70403 3.82193 3.89178 3.93986 4.00169 4.03346 4.14133 4.21955 4.30399 4.41672 4.53565 4.61935 4.70729 4.73749 4.83706 4.84944 4.88100 4.92597 4.99248 5.03377 5.09519 5.14691 5.18172 5.25948 5.32010 5.37926 5.38718 5.52465 5.57915 5.64442 5.66179 5.77615 6.25735 6.41504 6.56813 7.16599 7.26991 7.89252 8.40080 9.19051 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024447 B = 0.002159 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.060401 B =12966.042464 C =13489.196195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.052 4.052 3 Si 0.964 3.036 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.261 4.261 8 H 0.066 0.934 9 N -0.609 5.609 10 C 0.144 3.856 11 C -0.082 4.082 12 C -0.115 4.115 13 C -0.171 4.171 14 C 0.085 3.915 15 H 0.116 0.884 16 N -0.688 5.688 17 C 0.513 3.487 18 O -0.587 6.587 19 C -0.122 4.122 20 C -0.029 4.029 21 C -0.192 4.192 22 C -0.227 4.227 23 C -0.043 4.043 24 O -0.192 6.192 25 C -0.046 4.046 26 C -0.095 4.095 27 C 0.181 3.819 28 H 0.249 0.751 29 H 0.017 0.983 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.414 0.586 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.157 0.843 41 H 0.232 0.768 42 H 0.221 0.779 43 H 0.047 0.953 44 H 0.064 0.936 45 H -0.001 1.001 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.396 -24.863 -6.982 27.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.248 4.248 3 Si 0.793 3.207 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.391 4.391 8 H 0.084 0.916 9 N -0.332 5.332 10 C 0.018 3.982 11 C -0.121 4.121 12 C -0.117 4.117 13 C -0.209 4.209 14 C -0.021 4.021 15 H 0.134 0.866 16 N -0.339 5.339 17 C 0.301 3.699 18 O -0.467 6.467 19 C -0.162 4.162 20 C -0.067 4.067 21 C -0.194 4.194 22 C -0.246 4.246 23 C -0.109 4.109 24 O -0.088 6.088 25 C -0.113 4.113 26 C -0.134 4.134 27 C 0.055 3.945 28 H 0.058 0.942 29 H 0.035 0.965 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.129 0.871 35 H 0.252 0.748 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.175 0.825 41 H 0.248 0.752 42 H 0.238 0.762 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.017 0.983 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.214 -24.697 -7.723 27.468 hybrid contribution -0.218 1.384 0.469 1.478 sum 8.996 -23.313 -7.254 26.020 Atomic orbital electron populations 1.70181 1.06660 1.25784 1.55344 1.25795 0.96009 1.01519 1.01431 0.85310 0.78227 0.79735 0.77463 1.21430 1.22251 1.19191 1.19514 0.93083 0.86305 1.40208 0.91650 1.44245 1.37868 1.02470 1.48600 1.21022 0.97169 0.85947 0.94013 1.21443 0.95653 0.99582 0.95389 1.21789 0.99417 0.90358 1.00093 1.23595 0.95700 1.01375 1.00236 1.21598 0.93557 0.90786 0.96184 0.86615 1.45382 1.39568 1.33603 1.15299 1.21329 0.83533 0.82335 0.82654 1.90687 1.54265 1.71723 1.30030 1.21643 0.98234 0.95866 1.00462 1.19562 0.96515 0.94261 0.96320 1.20547 0.95145 0.96244 1.07442 1.22033 1.00093 0.94358 1.08080 1.24676 0.86719 0.96378 1.03175 1.84087 1.38651 1.19604 1.66478 1.24366 0.92617 0.88919 1.05408 1.21631 0.99824 0.94074 0.97886 1.20520 0.88120 0.97577 0.88291 0.94166 0.96481 0.92641 0.89507 0.92453 0.88443 0.87146 0.74779 0.86742 0.86748 0.91232 0.91478 0.82493 0.75150 0.76221 0.93402 0.91724 0.98288 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.50 11.23 21.65 0.24 -55.25 16 2 C -0.05 -2.92 4.88 84.86 0.41 -2.51 16 3 Si 0.96 45.01 29.59 68.60 2.03 47.04 16 4 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.26 -14.27 9.54 84.03 0.80 -13.47 16 8 H 0.07 3.48 7.89 -2.91 -0.02 3.46 16 9 N -0.61 -30.20 2.94 -698.89 -2.05 -32.26 16 10 C 0.14 5.66 6.51 86.43 0.56 6.22 16 11 C -0.08 -2.45 5.37 30.77 0.17 -2.29 16 12 C -0.12 -3.55 1.94 -52.17 -0.10 -3.65 16 13 C -0.17 -4.49 9.86 30.55 0.30 -4.18 16 14 C 0.09 2.29 6.14 44.94 0.28 2.56 16 15 H 0.12 3.56 7.40 -2.39 -0.02 3.54 16 16 N -0.69 -14.53 5.35 -442.77 -2.37 -16.90 16 17 C 0.51 11.57 7.83 87.66 0.69 12.25 16 18 O -0.59 -18.51 15.55 -3.05 -0.05 -18.56 16 19 C -0.12 -1.76 5.68 29.85 0.17 -1.59 16 20 C -0.03 -0.48 5.02 29.85 0.15 -0.33 16 21 C -0.19 -2.96 5.42 -19.94 -0.11 -3.07 16 22 C -0.23 -3.10 10.87 22.19 0.24 -2.86 16 23 C -0.04 -0.50 12.09 66.97 0.81 0.31 16 24 O -0.19 -2.94 10.65 -2.54 -0.03 -2.96 16 25 C -0.05 -0.64 12.01 66.97 0.80 0.16 16 26 C -0.09 -3.62 5.83 30.77 0.18 -3.44 16 27 C 0.18 8.73 5.40 86.43 0.47 9.20 16 28 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.06 2.13 7.92 -2.39 -0.02 2.11 16 31 H 0.09 1.89 6.75 -2.38 -0.02 1.88 16 32 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 34 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.41 6.47 7.12 -92.71 -0.66 5.81 16 36 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.29 8.10 -2.39 -0.02 1.27 16 39 H 0.07 1.29 8.10 -2.39 -0.02 1.27 16 40 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 41 H 0.23 0.86 8.06 -2.91 -0.02 0.83 16 42 H 0.22 1.87 8.06 -2.91 -0.02 1.85 16 43 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 44 H 0.06 2.25 8.10 -2.39 -0.02 2.23 16 45 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 46 H 0.05 2.93 5.93 -2.39 -0.01 2.91 16 Total: -1.00 -72.19 375.95 3.92 -68.27 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.32 Total: 17.30 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 5.82 Total: -6.68 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -4.18 Total: -104.41 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.07 Total: -21.52 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -72.19 3.92 -68.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752420118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.833 kcal (2) G-P(sol) polarization free energy of solvation -72.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds