Wall clock time and date at job start Tue Mar 31 2020 12:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99993 * 2 1 4 4 H 1.48496 * 109.47315 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47113 * 300.00377 * 3 2 1 6 6 H 1.48503 * 109.47119 * 59.99896 * 3 2 1 7 7 C 1.38809 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99706 * 197.85197 * 7 2 1 9 9 N 1.36936 * 120.00509 * 17.85012 * 7 2 1 10 10 C 1.46897 * 120.26541 * 208.82791 * 9 7 2 11 11 C 1.53349 * 108.78846 * 236.73637 * 10 9 7 12 12 C 1.53182 * 108.88595 * 308.91003 * 11 10 9 13 13 C 1.52841 * 117.65952 * 269.89297 * 12 11 10 14 14 C 1.52819 * 117.70918 * 201.03806 * 12 11 10 15 15 H 1.09001 * 117.50709 * 0.14052 * 14 12 11 16 16 N 1.46500 * 117.50011 * 215.12645 * 14 12 11 17 17 C 1.34778 * 120.00029 * 155.00111 * 16 14 12 18 18 O 1.21278 * 119.99985 * 0.02562 * 17 16 14 19 19 C 1.50698 * 120.00137 * 179.97438 * 17 16 14 20 20 C 1.53006 * 109.47103 * 180.02562 * 19 17 16 21 21 C 1.50698 * 109.47103 * 179.97438 * 20 19 17 22 22 C 1.41379 * 126.57878 * 269.71434 * 21 20 19 23 23 C 1.34526 * 106.84000 * 179.83361 * 22 21 20 24 24 O 1.34310 * 108.41640 * 0.42808 * 23 22 21 25 25 C 1.34300 * 109.47635 * 359.72262 * 24 23 22 26 26 C 1.53188 * 115.07923 * 55.37236 * 12 11 10 27 27 C 1.46848 * 120.37919 * 28.89818 * 9 7 2 28 28 H 0.96997 * 119.99668 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47068 * 117.01472 * 10 9 7 30 30 H 1.09001 * 109.70941 * 356.59539 * 10 9 7 31 31 H 1.08997 * 109.58641 * 189.05021 * 11 10 9 32 32 H 1.09002 * 109.58834 * 68.76324 * 11 10 9 33 33 H 1.09002 * 117.50384 * 359.77063 * 13 12 11 34 34 H 1.09005 * 117.50603 * 144.81618 * 13 12 11 35 35 H 0.97005 * 120.00258 * 335.00377 * 16 14 12 36 36 H 1.09001 * 109.47508 * 300.00006 * 19 17 16 37 37 H 1.09003 * 109.47357 * 60.00099 * 19 17 16 38 38 H 1.08999 * 109.46566 * 299.99768 * 20 19 17 39 39 H 1.08994 * 109.46980 * 60.00026 * 20 19 17 40 40 H 1.07991 * 126.58314 * 359.97438 * 22 21 20 41 41 H 1.07993 * 125.79099 * 180.18291 * 23 22 21 42 42 H 1.08003 * 125.78497 * 180.02562 * 25 24 23 43 43 H 1.09001 * 109.58624 * 64.33659 * 26 12 11 44 44 H 1.08991 * 109.58791 * 184.61842 * 26 12 11 45 45 H 1.09002 * 109.58502 * 3.30823 * 27 9 7 46 46 H 1.09006 * 109.57705 * 242.90863 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0513 -1.2245 0.2873 9 7 1.3750 -2.3597 -0.3624 10 6 1.8086 -3.6481 0.1943 11 6 2.1666 -4.5902 -0.9615 12 6 1.0060 -4.6121 -1.9609 13 6 -0.0884 -5.6589 -1.7545 14 6 0.9063 -5.8074 -2.9080 15 1 1.6663 -6.5837 -2.8205 16 7 0.4124 -5.5565 -4.2642 17 6 0.7547 -6.3856 -5.2701 18 8 1.4712 -7.3396 -5.0525 19 6 0.2463 -6.1279 -6.6652 20 6 0.7778 -7.2082 -7.6094 21 6 0.2688 -6.9508 -9.0043 22 6 -0.9268 -7.4497 -9.5703 23 6 -0.9917 -6.9732 -10.8267 24 8 0.0999 -6.2242 -11.0533 25 6 0.8678 -6.2071 -9.9517 26 6 0.5858 -3.2405 -2.4983 27 6 0.2557 -2.3261 -1.3123 28 1 -0.4849 0.8400 0.0004 29 1 0.9987 -4.0812 0.7813 30 1 2.6827 -3.4991 0.8282 31 1 2.3351 -5.5952 -0.5749 32 1 3.0693 -4.2334 -1.4576 33 1 0.0174 -6.3376 -0.9081 34 1 -1.1106 -5.3747 -2.0046 35 1 -0.1609 -4.7936 -4.4383 36 1 -0.8435 -6.1504 -6.6647 37 1 0.5893 -5.1496 -7.0020 38 1 1.8675 -7.1860 -7.6100 39 1 0.4344 -8.1862 -7.2724 40 1 -1.6505 -8.0885 -9.0862 41 1 -1.7848 -7.1641 -11.5344 42 1 1.8069 -5.6845 -9.8445 43 1 1.4027 -2.8086 -3.0764 44 1 -0.2931 -3.3505 -3.1334 45 1 0.1083 -1.3062 -1.6674 46 1 -0.6512 -2.6785 -0.8208 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752420124.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:20 Heat of formation + Delta-G solvation = 14.534876 kcal Electronic energy + Delta-G solvation = -25954.642558 eV Core-core repulsion = 22232.927207 eV Total energy + Delta-G solvation = -3721.715352 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.82270 -39.99577 -38.47025 -35.56359 -35.00199 -33.17046 -31.80640 -31.30829 -30.12428 -29.42898 -28.21844 -25.16548 -24.34392 -22.48606 -21.96065 -21.87450 -20.90008 -20.41006 -20.14592 -18.22712 -17.84063 -17.01551 -16.53198 -16.21744 -15.82844 -15.70915 -15.00588 -14.82723 -14.16437 -14.13812 -13.85204 -13.58321 -13.38502 -13.09294 -13.07447 -12.74556 -12.58982 -12.48293 -12.28597 -12.18837 -11.71826 -11.50838 -11.37091 -11.16848 -10.97220 -10.74913 -10.50138 -10.28586 -10.08672 -9.98014 -9.79425 -9.70610 -9.59239 -9.35285 -8.82335 -8.48447 -8.43556 -6.65294 -5.80676 -3.23357 1.47955 2.27805 2.58853 2.86574 3.16675 3.35298 3.43801 3.46180 4.18344 4.46341 4.48582 4.51887 4.67648 4.84648 4.97699 4.99847 5.01186 5.14418 5.15233 5.36869 5.37791 5.41589 5.48394 5.50813 5.62675 5.78090 5.87995 5.89444 5.96956 6.04572 6.09705 6.12211 6.23051 6.27524 6.43857 6.55612 6.59141 6.64860 6.70346 6.82514 6.82918 6.98934 7.32096 7.53044 7.62894 7.78838 8.22864 8.44986 9.20514 9.84087 10.40589 11.27197 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017106 B = 0.002375 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.497804 B =11786.193703 C =12818.804239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.590 5.590 10 C 0.149 3.851 11 C -0.098 4.098 12 C -0.097 4.097 13 C -0.183 4.183 14 C 0.068 3.932 15 H 0.130 0.870 16 N -0.696 5.696 17 C 0.514 3.486 18 O -0.546 6.546 19 C -0.135 4.135 20 C -0.033 4.033 21 C -0.179 4.179 22 C -0.209 4.209 23 C -0.044 4.044 24 O -0.179 6.179 25 C -0.039 4.039 26 C -0.104 4.104 27 C 0.174 3.826 28 H 0.253 0.747 29 H 0.019 0.981 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.402 0.598 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.147 0.853 41 H 0.201 0.799 42 H 0.202 0.798 43 H 0.060 0.940 44 H 0.043 0.957 45 H 0.090 0.910 46 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.795 -13.577 -17.566 22.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.730 3.270 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.023 3.977 11 C -0.137 4.137 12 C -0.099 4.099 13 C -0.221 4.221 14 C -0.037 4.037 15 H 0.148 0.852 16 N -0.345 5.345 17 C 0.301 3.699 18 O -0.424 6.424 19 C -0.175 4.175 20 C -0.071 4.071 21 C -0.180 4.180 22 C -0.228 4.228 23 C -0.112 4.112 24 O -0.074 6.074 25 C -0.107 4.107 26 C -0.143 4.143 27 C 0.048 3.952 28 H 0.063 0.937 29 H 0.037 0.963 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.238 0.762 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.165 0.835 41 H 0.218 0.782 42 H 0.219 0.781 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.108 0.892 46 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -2.316 -13.966 -17.669 22.641 hybrid contribution -0.168 1.147 0.127 1.167 sum -2.484 -12.818 -17.542 21.868 Atomic orbital electron populations 1.70046 1.05272 1.25365 1.53966 1.25046 0.95257 0.98444 1.00967 0.86257 0.79460 0.84011 0.77268 1.20243 1.21579 1.21738 1.19244 0.92890 0.85021 1.40943 0.91727 1.43993 1.37797 1.01581 1.47860 1.20868 0.97423 0.86898 0.92539 1.21682 0.95912 0.99278 0.96868 1.21942 0.98212 0.91161 0.98543 1.23519 0.95881 1.03053 0.99694 1.21870 1.00956 1.02348 0.78559 0.85206 1.45461 1.51699 1.29770 1.07616 1.20659 0.80307 0.82222 0.86691 1.90682 1.37541 1.29684 1.84501 1.21659 1.02743 1.01424 0.91672 1.19677 1.00968 0.98682 0.87805 1.20512 0.97013 1.02707 0.97769 1.21793 0.99790 1.05688 0.95524 1.24031 0.91079 0.97474 0.98605 1.84075 1.28934 1.56895 1.37522 1.23945 0.98182 1.04079 0.84489 1.21803 0.99083 0.93612 0.99842 1.20744 0.88855 0.98597 0.87044 0.93716 0.96265 0.92634 0.92892 0.91872 0.88532 0.88969 0.76248 0.88798 0.88751 0.90232 0.90157 0.83479 0.78241 0.78140 0.92106 0.93803 0.89213 0.96416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.75 11.23 55.49 0.62 -25.13 16 2 C 0.00 0.03 4.88 -17.43 -0.09 -0.05 16 3 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.25 -6.80 9.54 -15.06 -0.14 -6.94 16 8 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 9 N -0.59 -14.48 2.94 -172.21 -0.51 -14.98 16 10 C 0.15 3.08 6.52 -3.65 -0.02 3.06 16 11 C -0.10 -1.69 5.82 -26.46 -0.15 -1.84 16 12 C -0.10 -1.58 1.94 -154.49 -0.30 -1.88 16 13 C -0.18 -2.63 9.87 -26.80 -0.26 -2.90 16 14 C 0.07 0.99 6.14 -68.01 -0.42 0.57 16 15 H 0.13 2.01 7.40 -51.93 -0.38 1.63 16 16 N -0.70 -8.75 5.35 -53.88 -0.29 -9.04 16 17 C 0.51 6.53 7.83 -10.99 -0.09 6.44 16 18 O -0.55 -8.89 15.55 5.56 0.09 -8.80 16 19 C -0.13 -1.22 5.68 -27.88 -0.16 -1.38 16 20 C -0.03 -0.31 5.02 -27.88 -0.14 -0.45 16 21 C -0.18 -1.59 5.42 -104.74 -0.57 -2.16 16 22 C -0.21 -1.71 10.87 -39.70 -0.43 -2.14 16 23 C -0.04 -0.33 12.09 29.42 0.36 0.03 16 24 O -0.18 -1.60 10.65 5.70 0.06 -1.54 16 25 C -0.04 -0.33 12.01 29.42 0.35 0.03 16 26 C -0.10 -1.86 5.38 -26.46 -0.14 -2.01 16 27 C 0.17 3.99 5.40 -3.67 -0.02 3.97 16 28 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 1.13 7.92 -51.93 -0.41 0.72 16 31 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.40 4.38 7.12 -40.82 -0.29 4.09 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 39 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 40 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 41 H 0.20 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.20 1.12 8.06 -52.48 -0.42 0.70 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.04 0.67 6.74 -51.93 -0.35 0.32 16 45 H 0.09 2.32 5.93 -51.93 -0.31 2.01 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 375.95 15.07 5.67 5.67 Total: -1.00 -32.20 375.95 -8.82 -41.02 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -7.21 Total: 4.08 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -2.22 Total: -7.65 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -0.17 Total: -49.15 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.15 Total: -10.34 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.20 -8.82 -41.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752420124.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.551 kcal (2) G-P(sol) polarization free energy of solvation -32.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds