Wall clock time and date at job start Tue Mar 31 2020 12:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99993 * 2 1 4 4 H 1.48496 * 109.47315 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47113 * 300.00377 * 3 2 1 6 6 H 1.48503 * 109.47119 * 59.99896 * 3 2 1 7 7 C 1.38809 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99706 * 197.85197 * 7 2 1 9 9 N 1.36936 * 120.00509 * 17.85012 * 7 2 1 10 10 C 1.46897 * 120.26541 * 208.82791 * 9 7 2 11 11 C 1.53349 * 108.78846 * 236.73637 * 10 9 7 12 12 C 1.53182 * 108.88595 * 308.91003 * 11 10 9 13 13 C 1.52841 * 117.65952 * 269.89297 * 12 11 10 14 14 C 1.52819 * 117.70918 * 201.03806 * 12 11 10 15 15 H 1.09001 * 117.50709 * 0.14052 * 14 12 11 16 16 N 1.46500 * 117.50011 * 215.12645 * 14 12 11 17 17 C 1.34778 * 120.00029 * 155.00111 * 16 14 12 18 18 O 1.21278 * 119.99985 * 0.02562 * 17 16 14 19 19 C 1.50698 * 120.00137 * 179.97438 * 17 16 14 20 20 C 1.53006 * 109.47103 * 180.02562 * 19 17 16 21 21 C 1.50698 * 109.47103 * 179.97438 * 20 19 17 22 22 C 1.41379 * 126.57878 * 269.71434 * 21 20 19 23 23 C 1.34526 * 106.84000 * 179.83361 * 22 21 20 24 24 O 1.34310 * 108.41640 * 0.42808 * 23 22 21 25 25 C 1.34300 * 109.47635 * 359.72262 * 24 23 22 26 26 C 1.53188 * 115.07923 * 55.37236 * 12 11 10 27 27 C 1.46848 * 120.37919 * 28.89818 * 9 7 2 28 28 H 0.96997 * 119.99668 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47068 * 117.01472 * 10 9 7 30 30 H 1.09001 * 109.70941 * 356.59539 * 10 9 7 31 31 H 1.08997 * 109.58641 * 189.05021 * 11 10 9 32 32 H 1.09002 * 109.58834 * 68.76324 * 11 10 9 33 33 H 1.09002 * 117.50384 * 359.77063 * 13 12 11 34 34 H 1.09005 * 117.50603 * 144.81618 * 13 12 11 35 35 H 0.97005 * 120.00258 * 335.00377 * 16 14 12 36 36 H 1.09001 * 109.47508 * 300.00006 * 19 17 16 37 37 H 1.09003 * 109.47357 * 60.00099 * 19 17 16 38 38 H 1.08999 * 109.46566 * 299.99768 * 20 19 17 39 39 H 1.08994 * 109.46980 * 60.00026 * 20 19 17 40 40 H 1.07991 * 126.58314 * 359.97438 * 22 21 20 41 41 H 1.07993 * 125.79099 * 180.18291 * 23 22 21 42 42 H 1.08003 * 125.78497 * 180.02562 * 25 24 23 43 43 H 1.09001 * 109.58624 * 64.33659 * 26 12 11 44 44 H 1.08991 * 109.58791 * 184.61842 * 26 12 11 45 45 H 1.09002 * 109.58502 * 3.30823 * 27 9 7 46 46 H 1.09006 * 109.57705 * 242.90863 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0513 -1.2245 0.2873 9 7 1.3750 -2.3597 -0.3624 10 6 1.8086 -3.6481 0.1943 11 6 2.1666 -4.5902 -0.9615 12 6 1.0060 -4.6121 -1.9609 13 6 -0.0884 -5.6589 -1.7545 14 6 0.9063 -5.8074 -2.9080 15 1 1.6663 -6.5837 -2.8205 16 7 0.4124 -5.5565 -4.2642 17 6 0.7547 -6.3856 -5.2701 18 8 1.4712 -7.3396 -5.0525 19 6 0.2463 -6.1279 -6.6652 20 6 0.7778 -7.2082 -7.6094 21 6 0.2688 -6.9508 -9.0043 22 6 -0.9268 -7.4497 -9.5703 23 6 -0.9917 -6.9732 -10.8267 24 8 0.0999 -6.2242 -11.0533 25 6 0.8678 -6.2071 -9.9517 26 6 0.5858 -3.2405 -2.4983 27 6 0.2557 -2.3261 -1.3123 28 1 -0.4849 0.8400 0.0004 29 1 0.9987 -4.0812 0.7813 30 1 2.6827 -3.4991 0.8282 31 1 2.3351 -5.5952 -0.5749 32 1 3.0693 -4.2334 -1.4576 33 1 0.0174 -6.3376 -0.9081 34 1 -1.1106 -5.3747 -2.0046 35 1 -0.1609 -4.7936 -4.4383 36 1 -0.8435 -6.1504 -6.6647 37 1 0.5893 -5.1496 -7.0020 38 1 1.8675 -7.1860 -7.6100 39 1 0.4344 -8.1862 -7.2724 40 1 -1.6505 -8.0885 -9.0862 41 1 -1.7848 -7.1641 -11.5344 42 1 1.8069 -5.6845 -9.8445 43 1 1.4027 -2.8086 -3.0764 44 1 -0.2931 -3.3505 -3.1334 45 1 0.1083 -1.3062 -1.6674 46 1 -0.6512 -2.6785 -0.8208 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752420124.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:19 Heat of formation + Delta-G solvation = -4.200194 kcal Electronic energy + Delta-G solvation = -25955.454972 eV Core-core repulsion = 22232.927207 eV Total energy + Delta-G solvation = -3722.527765 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.41199 -41.12582 -39.75974 -37.14878 -35.76093 -34.53166 -33.28539 -32.24014 -31.74464 -30.19439 -29.72768 -26.27639 -25.91450 -24.05941 -23.18568 -22.45195 -22.34148 -21.37760 -20.93286 -19.80664 -18.59143 -18.36991 -17.74046 -17.17660 -16.83264 -16.71677 -16.57621 -15.76507 -15.50638 -15.41753 -15.17632 -14.86400 -14.75958 -14.58639 -14.15041 -13.74510 -13.63955 -13.43372 -13.29588 -13.17914 -13.06028 -12.95719 -12.88264 -12.60803 -12.49107 -12.28643 -11.96566 -11.87703 -11.77613 -11.35754 -11.26214 -11.01662 -10.69683 -10.53630 -10.45898 -9.64128 -9.40604 -8.61550 -7.86188 -5.31938 0.90543 1.45491 1.48127 1.58282 1.58933 1.66353 2.16781 2.36839 2.51792 2.96426 3.28536 3.63345 3.69649 3.84070 3.88164 3.93246 4.00480 4.02970 4.14371 4.21018 4.29075 4.40359 4.53369 4.62310 4.70437 4.72124 4.82606 4.86094 4.87278 4.91755 4.99143 5.01099 5.09995 5.14009 5.22791 5.25030 5.31554 5.37040 5.37755 5.52817 5.56055 5.63648 5.66535 5.79396 6.24853 6.41790 6.54734 7.17313 7.24444 7.89281 8.39867 9.18942 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017106 B = 0.002375 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.497804 B =11786.193703 C =12818.804239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.049 4.049 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.293 1.293 7 C -0.261 4.261 8 H 0.062 0.938 9 N -0.609 5.609 10 C 0.146 3.854 11 C -0.087 4.087 12 C -0.117 4.117 13 C -0.171 4.171 14 C 0.086 3.914 15 H 0.124 0.876 16 N -0.692 5.692 17 C 0.514 3.486 18 O -0.584 6.584 19 C -0.125 4.125 20 C -0.027 4.027 21 C -0.193 4.193 22 C -0.227 4.227 23 C -0.043 4.043 24 O -0.192 6.192 25 C -0.046 4.046 26 C -0.088 4.088 27 C 0.179 3.821 28 H 0.250 0.750 29 H 0.017 0.983 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.412 0.588 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.158 0.842 41 H 0.232 0.768 42 H 0.221 0.779 43 H 0.050 0.950 44 H 0.072 0.928 45 H 0.056 0.944 46 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.029 -14.336 -19.084 24.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.245 4.245 3 Si 0.791 3.209 4 H -0.194 1.194 5 H -0.215 1.215 6 H -0.220 1.220 7 C -0.392 4.392 8 H 0.080 0.920 9 N -0.332 5.332 10 C 0.020 3.980 11 C -0.126 4.126 12 C -0.118 4.118 13 C -0.210 4.210 14 C -0.021 4.021 15 H 0.141 0.859 16 N -0.342 5.342 17 C 0.303 3.697 18 O -0.464 6.464 19 C -0.164 4.164 20 C -0.065 4.065 21 C -0.195 4.195 22 C -0.246 4.246 23 C -0.110 4.110 24 O -0.088 6.088 25 C -0.113 4.113 26 C -0.127 4.127 27 C 0.054 3.946 28 H 0.059 0.941 29 H 0.035 0.965 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.126 0.874 34 H 0.118 0.882 35 H 0.249 0.751 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.175 0.825 41 H 0.249 0.751 42 H 0.238 0.762 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.074 0.926 46 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -2.550 -14.736 -19.198 24.336 hybrid contribution -0.106 1.322 0.624 1.465 sum -2.656 -13.414 -18.574 23.065 Atomic orbital electron populations 1.70183 1.06548 1.25743 1.55358 1.25752 0.96014 1.01339 1.01372 0.85275 0.78615 0.80128 0.76836 1.19370 1.21504 1.21972 1.19522 0.93013 0.86346 1.40308 0.92026 1.44269 1.37984 1.02243 1.48741 1.20989 0.97026 0.86057 0.93894 1.21515 0.95910 0.99537 0.95683 1.21796 0.99178 0.90917 0.99920 1.23597 0.95766 1.01645 0.99949 1.21661 1.00717 1.00265 0.79437 0.85851 1.45451 1.51604 1.30182 1.06956 1.21261 0.79373 0.81320 0.87733 1.90671 1.39284 1.31299 1.85174 1.21655 1.03693 1.02062 0.89026 1.19555 1.00414 0.98221 0.88320 1.20559 0.97723 1.03531 0.97637 1.22041 1.00019 1.06376 0.96154 1.24684 0.91020 0.96278 0.98988 1.84085 1.29535 1.57314 1.37865 1.24369 0.98763 1.04030 0.84169 1.21526 0.99885 0.93465 0.97802 1.20560 0.87925 0.97810 0.88345 0.94091 0.96507 0.92982 0.90196 0.92803 0.87448 0.88159 0.75079 0.86954 0.87008 0.91088 0.91340 0.82476 0.75136 0.76220 0.93151 0.90961 0.92602 0.98319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.46 11.23 21.65 0.24 -54.22 16 2 C -0.05 -2.74 4.88 84.86 0.41 -2.32 16 3 Si 0.96 44.60 29.59 68.60 2.03 46.63 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 7 C -0.26 -14.35 9.54 84.03 0.80 -13.55 16 8 H 0.06 3.34 7.89 -2.91 -0.02 3.32 16 9 N -0.61 -30.27 2.94 -698.75 -2.05 -32.33 16 10 C 0.15 6.00 6.52 86.42 0.56 6.56 16 11 C -0.09 -2.89 5.82 30.77 0.18 -2.71 16 12 C -0.12 -3.59 1.94 -52.17 -0.10 -3.69 16 13 C -0.17 -4.48 9.87 30.55 0.30 -4.18 16 14 C 0.09 2.28 6.14 44.94 0.28 2.55 16 15 H 0.12 3.56 7.40 -2.39 -0.02 3.54 16 16 N -0.69 -15.71 5.35 -442.78 -2.37 -18.08 16 17 C 0.51 12.06 7.83 87.66 0.69 12.75 16 18 O -0.58 -18.34 15.55 -3.02 -0.05 -18.39 16 19 C -0.12 -1.98 5.68 29.85 0.17 -1.81 16 20 C -0.03 -0.47 5.02 29.85 0.15 -0.32 16 21 C -0.19 -3.15 5.42 -19.94 -0.11 -3.26 16 22 C -0.23 -3.32 10.87 22.19 0.24 -3.08 16 23 C -0.04 -0.54 12.09 66.97 0.81 0.27 16 24 O -0.19 -3.11 10.65 -2.52 -0.03 -3.14 16 25 C -0.05 -0.69 12.01 66.97 0.80 0.11 16 26 C -0.09 -3.05 5.38 30.77 0.17 -2.89 16 27 C 0.18 8.35 5.40 86.43 0.47 8.81 16 28 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 29 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 2.12 7.92 -2.39 -0.02 2.10 16 31 H 0.08 2.21 8.10 -2.39 -0.02 2.20 16 32 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 35 H 0.41 7.76 7.12 -92.70 -0.66 7.10 16 36 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.07 1.34 8.10 -2.39 -0.02 1.32 16 39 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 40 H 0.16 1.85 8.06 -2.92 -0.02 1.82 16 41 H 0.23 1.07 8.06 -2.91 -0.02 1.04 16 42 H 0.22 2.08 8.06 -2.91 -0.02 2.05 16 43 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.07 2.07 6.74 -2.39 -0.02 2.05 16 45 H 0.06 2.97 5.93 -2.39 -0.01 2.95 16 46 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 Total: -1.00 -70.51 375.95 3.92 -66.59 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.32 Total: 19.69 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 5.82 Total: -6.76 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -4.18 Total: -104.63 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.07 Total: -21.53 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -70.51 3.92 -66.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752420124.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.394 kcal (2) G-P(sol) polarization free energy of solvation -70.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds