Wall clock time and date at job start Tue Mar 31 2020 12:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99869 * 2 1 4 4 H 1.48497 * 109.47336 * 90.00076 * 3 2 1 5 5 H 1.48503 * 109.46952 * 209.99832 * 3 2 1 6 6 H 1.48501 * 109.46945 * 329.99588 * 3 2 1 7 7 C 1.38811 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99743 * 0.02562 * 7 2 1 9 9 N 1.36933 * 120.00255 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00255 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47051 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.49652 * 304.93759 * 11 10 9 13 13 C 1.53041 * 109.49606 * 184.83792 * 11 10 9 14 14 C 1.53037 * 109.53595 * 178.68285 * 13 11 10 15 15 C 1.53192 * 109.31350 * 61.36688 * 14 13 11 16 16 N 1.46921 * 108.77402 * 305.36306 * 15 14 13 17 17 C 1.34781 * 120.63036 * 233.63223 * 16 15 14 18 18 O 1.21617 * 119.99901 * 174.36228 * 17 16 15 19 19 C 1.47375 * 120.00064 * 354.35331 * 17 16 15 20 20 C 1.47029 * 127.19238 * 320.99172 * 19 17 16 21 21 C 1.34178 * 105.95180 * 179.97438 * 20 19 17 22 22 O 1.34211 * 109.12662 * 359.97438 * 21 20 19 23 23 C 1.33651 * 110.90989 * 359.76525 * 22 21 20 24 24 C 1.50697 * 125.80599 * 180.26658 * 23 22 21 25 25 C 1.53001 * 117.49741 * 8.88589 * 24 23 22 26 26 C 1.53002 * 117.49621 * 300.22900 * 24 23 22 27 27 C 1.46921 * 118.74054 * 53.60707 * 16 15 14 28 28 H 0.97000 * 120.00017 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99404 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.46842 * 299.99994 * 10 9 7 31 31 H 1.09004 * 109.46642 * 60.00241 * 10 9 7 32 32 H 1.08992 * 109.45863 * 298.70214 * 13 11 10 33 33 H 1.09004 * 109.46047 * 58.66357 * 13 11 10 34 34 H 1.08999 * 109.50136 * 301.41114 * 14 13 11 35 35 H 1.09003 * 109.52224 * 181.33446 * 14 13 11 36 36 H 1.08997 * 109.58664 * 185.57590 * 15 14 13 37 37 H 1.08995 * 109.70588 * 65.21758 * 15 14 13 38 38 H 1.07996 * 127.01973 * 359.94029 * 20 19 17 39 39 H 1.07999 * 125.43250 * 180.02562 * 21 20 19 40 40 H 1.08995 * 115.55648 * 154.55671 * 24 23 22 41 41 H 1.09006 * 117.49805 * 359.97438 * 25 24 23 42 42 H 1.08998 * 117.50510 * 145.02426 * 25 24 23 43 43 H 1.09008 * 117.49665 * 214.97588 * 26 24 23 44 44 H 1.08994 * 117.50080 * 359.97438 * 26 24 23 45 45 H 1.09004 * 109.58891 * 186.60259 * 27 16 15 46 46 H 1.09004 * 109.70551 * 66.24941 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 1.4000 5 1 3.5478 1.4401 -0.7000 6 1 1.4476 2.6526 -0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.6164 -2.1913 0.0000 12 1 5.8665 -1.5463 -0.8424 13 6 6.3812 -3.5113 -0.1217 14 6 7.8852 -3.2301 -0.1548 15 6 8.3021 -2.5485 1.1522 16 7 7.4692 -1.3543 1.3493 17 6 8.0352 -0.1499 1.5628 18 8 7.3405 0.8465 1.6223 19 6 9.4960 -0.0404 1.7244 20 6 10.3831 -0.9689 2.4404 21 6 11.6202 -0.4636 2.3203 22 8 11.5643 0.6711 1.6057 23 6 10.3086 0.9401 1.2352 24 6 9.8652 2.1267 0.4189 25 6 10.9544 3.0014 -0.2053 26 6 10.1459 3.5194 0.9868 27 6 6.0076 -1.4979 1.3087 28 1 -0.4850 0.8400 0.0004 29 1 3.8646 -0.3621 -0.0004 30 1 3.8491 -3.0423 0.8902 31 1 3.8484 -3.0426 -0.8898 32 1 6.1492 -4.1456 0.7338 33 1 6.0863 -4.0186 -1.0403 34 1 8.1146 -2.5757 -0.9957 35 1 8.4288 -4.1684 -0.2653 36 1 9.3508 -2.2570 1.0940 37 1 8.1595 -3.2352 1.9866 38 1 10.0971 -1.8727 2.9578 39 1 12.5178 -0.9007 2.7321 40 1 8.9436 1.9903 -0.1468 41 1 11.9916 2.7188 -0.0251 42 1 10.7492 3.4407 -1.1815 43 1 9.4091 4.2993 0.7944 44 1 10.6509 3.5773 1.9510 45 1 5.5423 -0.5132 1.3538 46 1 5.6737 -2.0988 2.1546 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752804072.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:38 Heat of formation + Delta-G solvation = 20.188357 kcal Electronic energy + Delta-G solvation = -27176.085995 eV Core-core repulsion = 23454.615796 eV Total energy + Delta-G solvation = -3721.470198 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.88784 -39.98214 -37.67945 -37.26732 -35.10639 -33.44817 -32.55041 -31.73941 -30.19335 -29.97096 -26.20643 -25.67970 -23.59567 -23.01312 -22.83411 -22.59777 -21.21033 -20.97202 -19.99380 -18.87910 -17.83002 -17.36611 -16.61407 -16.43780 -15.91081 -15.66012 -15.18611 -14.71728 -14.63565 -14.58126 -13.97688 -13.85504 -13.61036 -13.23823 -13.03331 -12.90130 -12.78586 -12.58209 -12.39186 -12.24854 -11.85913 -11.60999 -11.40154 -11.24198 -11.15370 -10.87042 -10.74706 -10.68174 -10.45060 -10.24896 -10.07711 -10.01355 -9.71125 -9.51211 -8.84436 -8.75769 -8.52082 -7.17316 -5.71332 -3.06666 1.19488 1.82108 2.47100 2.89668 3.15316 3.47280 3.52356 3.55591 3.57483 4.06540 4.40147 4.45782 4.64701 4.66091 4.67014 4.71056 4.83793 4.87427 4.96033 5.10657 5.15336 5.26018 5.32224 5.36452 5.45838 5.50552 5.56158 5.59758 5.68603 5.73198 5.75719 5.78032 5.80379 5.86543 5.92929 6.00097 6.04680 6.06198 6.32416 6.37096 6.56504 6.69273 6.77898 6.79293 7.44154 8.04536 8.22362 8.47797 9.27077 10.00014 10.19430 11.46965 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013417 B = 0.003930 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.355830 B = 7123.636391 C = 8711.571003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.006 3.994 3 Si 0.881 3.119 4 H -0.282 1.282 5 H -0.276 1.276 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.757 5.757 10 C 0.165 3.835 11 C -0.111 4.111 12 H 0.073 0.927 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.102 3.898 16 N -0.604 5.604 17 C 0.585 3.415 18 O -0.530 6.530 19 C -0.225 4.225 20 C -0.187 4.187 21 C -0.039 4.039 22 O -0.175 6.175 23 C 0.097 3.903 24 C -0.087 4.087 25 C -0.170 4.170 26 C -0.155 4.155 27 C 0.119 3.881 28 H 0.259 0.741 29 H 0.362 0.638 30 H 0.029 0.971 31 H 0.030 0.970 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.159 0.841 39 H 0.208 0.792 40 H 0.140 0.860 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.278 -3.500 2.633 29.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.190 4.190 3 Si 0.711 3.289 4 H -0.209 1.209 5 H -0.202 1.202 6 H -0.217 1.217 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.037 3.963 11 C -0.131 4.131 12 H 0.091 0.909 13 C -0.150 4.150 14 C -0.172 4.172 15 C -0.021 4.021 16 N -0.336 5.336 17 C 0.374 3.626 18 O -0.407 6.407 19 C -0.230 4.230 20 C -0.206 4.206 21 C -0.105 4.105 22 O -0.072 6.072 23 C 0.044 3.956 24 C -0.105 4.105 25 C -0.207 4.207 26 C -0.192 4.192 27 C -0.003 4.003 28 H 0.069 0.931 29 H 0.195 0.805 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.176 0.824 39 H 0.225 0.775 40 H 0.157 0.843 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.126 0.874 44 H 0.117 0.883 45 H 0.115 0.885 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 28.899 -2.881 2.608 29.159 hybrid contribution 0.408 0.782 0.178 0.899 sum 29.307 -2.099 2.786 29.513 Atomic orbital electron populations 1.69708 1.05099 1.25806 1.57700 1.24647 0.95207 0.97178 1.01941 0.86593 0.79199 0.84940 0.78132 1.20857 1.20246 1.21745 1.19048 0.80642 0.94700 1.43024 0.89210 1.42778 1.04109 1.02274 1.91141 1.20616 0.87378 0.89422 0.98846 1.21742 0.96865 0.96712 0.97749 0.90852 1.21510 0.93799 0.97132 1.02535 1.21914 0.97131 1.00551 0.97564 1.21948 0.95580 0.86838 0.97722 1.47975 1.07537 1.07292 1.70842 1.17310 0.85764 0.83056 0.76512 1.90839 1.63360 1.35838 1.50702 1.21075 0.94487 0.98689 1.08729 1.22885 0.91835 1.01478 1.04401 1.23850 0.99995 0.86924 0.99685 1.83700 1.29170 1.38073 1.56211 1.21551 0.80787 0.95728 0.97502 1.20580 1.01135 0.86768 1.01986 1.23089 0.96701 1.02536 0.98341 1.23060 1.02946 0.94819 0.98356 1.21736 0.77806 1.03159 0.97548 0.93101 0.80480 0.95345 0.95194 0.91557 0.91329 0.91617 0.90807 0.89195 0.91479 0.82370 0.77505 0.84255 0.88069 0.87668 0.87383 0.88336 0.88518 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.21 13.97 55.49 0.78 -29.43 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 3 Si 0.88 23.53 27.74 -169.99 -4.71 18.81 16 4 H -0.28 -7.57 7.11 56.52 0.40 -7.17 16 5 H -0.28 -7.12 6.52 56.52 0.37 -6.75 16 6 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 7 C -0.24 -7.15 10.47 -15.06 -0.16 -7.30 16 8 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 9 N -0.76 -18.72 5.18 -59.91 -0.31 -19.03 16 10 C 0.17 3.21 5.65 -4.04 -0.02 3.19 16 11 C -0.11 -1.74 2.38 -90.50 -0.21 -1.96 16 12 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 13 C -0.11 -1.31 5.17 -26.69 -0.14 -1.44 16 14 C -0.13 -1.30 6.08 -26.61 -0.16 -1.46 16 15 C 0.10 1.03 5.56 -3.71 -0.02 1.01 16 16 N -0.60 -8.52 2.97 -174.06 -0.52 -9.04 16 17 C 0.59 9.33 7.45 -12.54 -0.09 9.24 16 18 O -0.53 -10.57 15.82 5.26 0.08 -10.49 16 19 C -0.23 -2.90 5.35 -103.27 -0.55 -3.45 16 20 C -0.19 -1.72 8.73 -37.45 -0.33 -2.05 16 21 C -0.04 -0.30 12.03 29.30 0.35 0.05 16 22 O -0.18 -1.78 10.23 7.67 0.08 -1.71 16 23 C 0.10 1.17 6.85 -34.97 -0.24 0.93 16 24 C -0.09 -0.99 5.63 -91.77 -0.52 -1.51 16 25 C -0.17 -1.44 10.17 -26.69 -0.27 -1.72 16 26 C -0.15 -1.50 10.24 -26.69 -0.27 -1.77 16 27 C 0.12 1.94 5.53 -3.72 -0.02 1.92 16 28 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 29 H 0.36 9.01 4.75 -40.82 -0.19 8.82 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.80 4.73 -51.93 -0.25 0.56 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.16 1.12 7.47 -52.49 -0.39 0.73 16 39 H 0.21 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.14 1.79 7.89 -51.93 -0.41 1.38 16 41 H 0.10 0.80 7.97 -51.93 -0.41 0.38 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.11 0.98 8.14 -51.92 -0.42 0.55 16 44 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.10 1.92 6.20 -51.93 -0.32 1.60 16 46 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 370.56 15.07 5.58 5.58 Total: -1.00 -35.86 370.56 -8.84 -44.70 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -7.06 Total: 6.83 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -2.75 Total: -6.24 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.05 Total: -57.49 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.16 Total: -12.19 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -4.71 Total: 18.81 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.86 -8.84 -44.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752804072.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.884 kcal (2) G-P(sol) polarization free energy of solvation -35.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds