Wall clock time and date at job start Tue Mar 31 2020 12:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99869 * 2 1 4 4 H 1.48497 * 109.47336 * 90.00076 * 3 2 1 5 5 H 1.48503 * 109.46952 * 209.99832 * 3 2 1 6 6 H 1.48501 * 109.46945 * 329.99588 * 3 2 1 7 7 C 1.38811 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99743 * 0.02562 * 7 2 1 9 9 N 1.36933 * 120.00255 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00255 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47051 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.49652 * 304.93759 * 11 10 9 13 13 C 1.53041 * 109.49606 * 184.83792 * 11 10 9 14 14 C 1.53037 * 109.53595 * 178.68285 * 13 11 10 15 15 C 1.53192 * 109.31350 * 61.36688 * 14 13 11 16 16 N 1.46921 * 108.77402 * 305.36306 * 15 14 13 17 17 C 1.34781 * 120.63036 * 233.63223 * 16 15 14 18 18 O 1.21617 * 119.99901 * 174.36228 * 17 16 15 19 19 C 1.47375 * 120.00064 * 354.35331 * 17 16 15 20 20 C 1.47029 * 127.19238 * 320.99172 * 19 17 16 21 21 C 1.34178 * 105.95180 * 179.97438 * 20 19 17 22 22 O 1.34211 * 109.12662 * 359.97438 * 21 20 19 23 23 C 1.33651 * 110.90989 * 359.76525 * 22 21 20 24 24 C 1.50697 * 125.80599 * 180.26658 * 23 22 21 25 25 C 1.53001 * 117.49741 * 8.88589 * 24 23 22 26 26 C 1.53002 * 117.49621 * 300.22900 * 24 23 22 27 27 C 1.46921 * 118.74054 * 53.60707 * 16 15 14 28 28 H 0.97000 * 120.00017 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99404 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.46842 * 299.99994 * 10 9 7 31 31 H 1.09004 * 109.46642 * 60.00241 * 10 9 7 32 32 H 1.08992 * 109.45863 * 298.70214 * 13 11 10 33 33 H 1.09004 * 109.46047 * 58.66357 * 13 11 10 34 34 H 1.08999 * 109.50136 * 301.41114 * 14 13 11 35 35 H 1.09003 * 109.52224 * 181.33446 * 14 13 11 36 36 H 1.08997 * 109.58664 * 185.57590 * 15 14 13 37 37 H 1.08995 * 109.70588 * 65.21758 * 15 14 13 38 38 H 1.07996 * 127.01973 * 359.94029 * 20 19 17 39 39 H 1.07999 * 125.43250 * 180.02562 * 21 20 19 40 40 H 1.08995 * 115.55648 * 154.55671 * 24 23 22 41 41 H 1.09006 * 117.49805 * 359.97438 * 25 24 23 42 42 H 1.08998 * 117.50510 * 145.02426 * 25 24 23 43 43 H 1.09008 * 117.49665 * 214.97588 * 26 24 23 44 44 H 1.08994 * 117.50080 * 359.97438 * 26 24 23 45 45 H 1.09004 * 109.58891 * 186.60259 * 27 16 15 46 46 H 1.09004 * 109.70551 * 66.24941 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 1.4000 5 1 3.5478 1.4401 -0.7000 6 1 1.4476 2.6526 -0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.6164 -2.1913 0.0000 12 1 5.8665 -1.5463 -0.8424 13 6 6.3812 -3.5113 -0.1217 14 6 7.8852 -3.2301 -0.1548 15 6 8.3021 -2.5485 1.1522 16 7 7.4692 -1.3543 1.3493 17 6 8.0352 -0.1499 1.5628 18 8 7.3405 0.8465 1.6223 19 6 9.4960 -0.0404 1.7244 20 6 10.3831 -0.9689 2.4404 21 6 11.6202 -0.4636 2.3203 22 8 11.5643 0.6711 1.6057 23 6 10.3086 0.9401 1.2352 24 6 9.8652 2.1267 0.4189 25 6 10.9544 3.0014 -0.2053 26 6 10.1459 3.5194 0.9868 27 6 6.0076 -1.4979 1.3087 28 1 -0.4850 0.8400 0.0004 29 1 3.8646 -0.3621 -0.0004 30 1 3.8491 -3.0423 0.8902 31 1 3.8484 -3.0426 -0.8898 32 1 6.1492 -4.1456 0.7338 33 1 6.0863 -4.0186 -1.0403 34 1 8.1146 -2.5757 -0.9957 35 1 8.4288 -4.1684 -0.2653 36 1 9.3508 -2.2570 1.0940 37 1 8.1595 -3.2352 1.9866 38 1 10.0971 -1.8727 2.9578 39 1 12.5178 -0.9007 2.7321 40 1 8.9436 1.9903 -0.1468 41 1 11.9916 2.7188 -0.0251 42 1 10.7492 3.4407 -1.1815 43 1 9.4091 4.2993 0.7944 44 1 10.6509 3.5773 1.9510 45 1 5.5423 -0.5132 1.3538 46 1 5.6737 -2.0988 2.1546 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752804072.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:37 Heat of formation + Delta-G solvation = -3.015591 kcal Electronic energy + Delta-G solvation = -27177.092193 eV Core-core repulsion = 23454.615796 eV Total energy + Delta-G solvation = -3722.476397 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.64669 -41.12312 -38.88229 -38.08758 -36.78342 -34.75861 -33.74081 -33.23746 -31.79427 -30.74325 -27.69254 -26.89534 -24.65912 -24.39510 -23.74459 -23.35790 -22.63375 -21.93273 -21.14950 -19.75917 -19.67982 -18.58083 -17.59685 -17.27151 -16.95762 -16.70727 -16.42872 -16.27153 -15.92067 -15.57902 -15.49107 -15.09182 -14.81133 -14.45081 -14.28921 -14.12400 -14.00043 -13.82336 -13.54718 -13.37274 -13.10326 -13.01775 -12.74397 -12.53449 -12.24627 -12.09616 -12.01863 -11.92696 -11.85894 -11.61720 -11.50010 -11.43018 -11.14579 -11.04904 -10.61354 -9.73752 -9.43812 -9.33991 -8.09000 -5.40566 0.31734 1.12305 1.29996 1.34039 1.38680 1.68438 1.85829 2.11702 2.40463 2.80619 3.23178 3.35115 3.45697 3.55485 3.69838 3.82272 3.84990 3.93160 3.93541 4.02160 4.08457 4.14938 4.26730 4.39128 4.50123 4.57318 4.64345 4.65893 4.72459 4.76001 4.81213 4.85245 4.88339 4.94806 4.98803 5.00388 5.09430 5.11259 5.17359 5.29012 5.36821 5.45520 5.50046 5.71113 6.01733 6.16451 6.35984 7.01956 7.06657 7.79581 7.96157 9.12674 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013417 B = 0.003930 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.355830 B = 7123.636391 C = 8711.571003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.054 4.054 3 Si 0.943 3.057 4 H -0.285 1.285 5 H -0.267 1.267 6 H -0.287 1.287 7 C -0.231 4.231 8 H 0.066 0.934 9 N -0.763 5.763 10 C 0.161 3.839 11 C -0.098 4.098 12 H 0.055 0.945 13 C -0.106 4.106 14 C -0.127 4.127 15 C 0.097 3.903 16 N -0.600 5.600 17 C 0.577 3.423 18 O -0.587 6.587 19 C -0.252 4.252 20 C -0.195 4.195 21 C -0.019 4.019 22 O -0.176 6.176 23 C 0.088 3.912 24 C -0.115 4.115 25 C -0.143 4.143 26 C -0.158 4.158 27 C 0.122 3.878 28 H 0.259 0.741 29 H 0.361 0.639 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.182 0.818 39 H 0.257 0.743 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.108 0.892 44 H 0.102 0.898 45 H 0.053 0.947 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.548 -5.095 2.989 34.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.246 4.246 3 Si 0.772 3.228 4 H -0.212 1.212 5 H -0.193 1.193 6 H -0.213 1.213 7 C -0.362 4.362 8 H 0.084 0.916 9 N -0.408 5.408 10 C 0.034 3.966 11 C -0.118 4.118 12 H 0.073 0.927 13 C -0.144 4.144 14 C -0.165 4.165 15 C -0.024 4.024 16 N -0.331 5.331 17 C 0.367 3.633 18 O -0.469 6.469 19 C -0.256 4.256 20 C -0.214 4.214 21 C -0.084 4.084 22 O -0.072 6.072 23 C 0.036 3.964 24 C -0.134 4.134 25 C -0.180 4.180 26 C -0.195 4.195 27 C -0.001 4.001 28 H 0.068 0.932 29 H 0.193 0.807 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.110 0.890 38 H 0.199 0.801 39 H 0.273 0.727 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.137 0.863 43 H 0.126 0.874 44 H 0.120 0.880 45 H 0.071 0.929 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 33.235 -4.544 2.952 33.673 hybrid contribution -0.893 1.157 0.092 1.464 sum 32.342 -3.386 3.043 32.661 Atomic orbital electron populations 1.69843 1.06644 1.26554 1.59917 1.25312 0.95951 1.00407 1.02948 0.85598 0.78270 0.81091 0.77888 1.21164 1.19268 1.21348 1.19099 0.82598 0.93666 1.40801 0.91581 1.42887 1.02741 1.04295 1.90920 1.20848 0.89517 0.87197 0.98994 1.21602 0.94608 0.98910 0.96663 0.92664 1.21509 0.94681 0.94520 1.03701 1.21908 0.95738 1.02009 0.96801 1.22304 0.95749 0.85489 0.98896 1.48058 1.06831 1.08326 1.69895 1.17879 0.87098 0.82717 0.75587 1.90794 1.64915 1.37767 1.53401 1.21032 0.92969 1.00849 1.10779 1.23110 0.91476 1.02021 1.04768 1.24798 1.01123 0.85129 0.97306 1.83722 1.27930 1.39140 1.56429 1.21564 0.81518 0.95633 0.97731 1.20504 1.01581 0.87801 1.03476 1.23176 0.96372 1.00051 0.98366 1.23127 1.03375 0.93758 0.99244 1.21506 0.79490 1.00893 0.98190 0.93215 0.80652 0.94709 0.94827 0.90000 0.90467 0.92822 0.87032 0.87546 0.89009 0.80111 0.72748 0.86934 0.86804 0.86331 0.87372 0.88001 0.92866 0.90251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.95 13.97 21.65 0.30 -64.65 16 2 C -0.05 -3.38 5.50 84.86 0.47 -2.91 16 3 Si 0.94 50.24 27.74 68.60 1.90 52.15 16 4 H -0.29 -15.22 7.11 99.48 0.71 -14.51 16 5 H -0.27 -13.65 6.52 99.48 0.65 -13.00 16 6 H -0.29 -15.03 7.11 99.48 0.71 -14.32 16 7 C -0.23 -13.82 10.47 84.03 0.88 -12.94 16 8 H 0.07 4.21 8.06 -2.91 -0.02 4.19 16 9 N -0.76 -38.41 5.18 -343.45 -1.78 -40.19 16 10 C 0.16 6.24 5.65 86.38 0.49 6.73 16 11 C -0.10 -3.03 2.38 -10.72 -0.03 -3.06 16 12 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 13 C -0.11 -2.19 5.17 30.62 0.16 -2.03 16 14 C -0.13 -2.02 6.08 30.67 0.19 -1.83 16 15 C 0.10 1.64 5.56 86.36 0.48 2.12 16 16 N -0.60 -16.59 2.97 -822.86 -2.45 -19.04 16 17 C 0.58 18.83 7.45 86.65 0.65 19.47 16 18 O -0.59 -24.96 15.82 -4.09 -0.06 -25.03 16 19 C -0.25 -6.29 5.35 -18.99 -0.10 -6.39 16 20 C -0.19 -2.96 8.73 23.65 0.21 -2.76 16 21 C -0.02 -0.21 12.03 66.89 0.80 0.60 16 22 O -0.18 -3.11 10.23 4.52 0.05 -3.07 16 23 C 0.09 2.07 6.85 25.26 0.17 2.24 16 24 C -0.12 -2.70 5.63 -11.54 -0.06 -2.76 16 25 C -0.14 -2.26 10.17 30.62 0.31 -1.95 16 26 C -0.16 -3.05 10.24 30.62 0.31 -2.73 16 27 C 0.12 4.01 5.53 86.36 0.48 4.49 16 28 H 0.26 16.36 8.31 -92.71 -0.77 15.59 16 29 H 0.36 18.37 4.75 -92.71 -0.44 17.93 16 30 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.11 1.52 4.73 -2.39 -0.01 1.51 16 37 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.18 1.79 7.47 -2.91 -0.02 1.77 16 39 H 0.26 0.13 8.06 -2.91 -0.02 0.11 16 40 H 0.11 3.17 7.89 -2.39 -0.02 3.15 16 41 H 0.11 1.52 7.97 -2.38 -0.02 1.50 16 42 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 44 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.05 2.23 6.20 -2.38 -0.01 2.21 16 46 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -82.90 370.56 3.85 -79.05 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 0.49 Total: 24.48 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 5.40 Total: -3.70 kcal Atomic # 7 Polarization: -119.95 SS G_CDS: -3.92 Total: -123.88 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.02 Total: -28.10 kcal Atomic # 14 Polarization: 50.24 SS G_CDS: 1.90 Total: 52.15 kcal Total: -82.90 3.85 -79.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752804072.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.033 kcal (2) G-P(sol) polarization free energy of solvation -82.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds