Wall clock time and date at job start Tue Mar 31 2020 12:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99739 * 2 1 4 4 H 1.48497 * 109.47093 * 270.00236 * 3 2 1 5 5 H 1.48504 * 109.47189 * 30.00139 * 3 2 1 6 6 H 1.48500 * 109.47392 * 149.99714 * 3 2 1 7 7 C 1.38811 * 120.00562 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99492 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00367 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 H 1.08992 * 109.50009 * 54.93098 * 11 10 9 13 13 C 1.53043 * 109.49628 * 294.83366 * 11 10 9 14 14 C 1.53043 * 109.53442 * 178.68700 * 13 11 10 15 15 C 1.53184 * 109.31371 * 61.36785 * 14 13 11 16 16 N 1.46925 * 108.77814 * 305.35995 * 15 14 13 17 17 C 1.34773 * 120.63543 * 233.63175 * 16 15 14 18 18 O 1.21279 * 120.00133 * 179.97438 * 17 16 15 19 19 C 1.50704 * 119.99674 * 359.97438 * 17 16 15 20 20 H 1.08999 * 115.55047 * 34.33170 * 19 17 16 21 21 C 1.52998 * 117.50022 * 248.61692 * 19 17 16 22 22 C 1.53000 * 60.00157 * 252.51223 * 21 19 17 23 23 H 1.09007 * 117.51605 * 107.47901 * 22 21 19 24 24 C 1.50699 * 117.49981 * 252.50646 * 22 21 19 25 25 C 1.34508 * 125.78701 * 188.33678 * 24 22 21 26 26 C 1.41391 * 106.83747 * 179.89379 * 25 24 22 27 27 C 1.34514 * 106.84233 * 0.37331 * 26 25 24 28 28 O 1.34305 * 125.78530 * 8.65322 * 24 22 21 29 29 C 1.46932 * 118.73552 * 53.61105 * 16 15 14 30 30 H 0.96993 * 120.00222 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99578 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47391 * 59.99677 * 10 9 7 33 33 H 1.09001 * 109.46813 * 299.99734 * 10 9 7 34 34 H 1.08998 * 109.45808 * 298.70744 * 13 11 10 35 35 H 1.08999 * 109.45944 * 58.66670 * 13 11 10 36 36 H 1.09001 * 109.49613 * 301.40965 * 14 13 11 37 37 H 1.09003 * 109.51478 * 181.33310 * 14 13 11 38 38 H 1.08998 * 109.58610 * 185.57184 * 15 14 13 39 39 H 1.09002 * 109.70615 * 65.21946 * 15 14 13 40 40 H 1.08997 * 117.49884 * 0.02562 * 21 19 17 41 41 H 1.08996 * 117.49475 * 145.01900 * 21 19 17 42 42 H 1.07997 * 126.58492 * 0.02909 * 25 24 22 43 43 H 1.08000 * 126.57893 * 180.16830 * 26 25 24 44 44 H 1.07994 * 125.79341 * 179.75301 * 27 26 25 45 45 H 1.08991 * 109.58462 * 186.60567 * 29 16 15 46 46 H 1.09001 * 109.58445 * 66.17782 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0014 9 7 3.3797 -1.2020 0.0011 10 6 4.1123 -2.4707 0.0011 11 6 5.6165 -2.1910 0.0024 12 1 5.8656 -1.5445 0.8437 13 6 6.0089 -1.5014 -1.3063 14 6 7.5076 -1.1917 -1.2922 15 6 8.2945 -2.5013 -1.1810 16 7 7.8199 -3.2396 -0.0027 17 6 8.6869 -3.6587 0.9402 18 8 8.2825 -4.2669 1.9084 19 6 10.1588 -3.3716 0.7914 20 1 10.4070 -2.4229 0.3157 21 6 11.0870 -4.5589 0.5276 22 6 11.0916 -3.8735 1.8955 23 1 10.6405 -4.4111 2.7296 24 6 12.2834 -3.0187 2.2416 25 6 12.5367 -2.4721 3.4442 26 6 13.7508 -1.7578 3.3219 27 6 14.1625 -1.9039 2.0496 28 8 13.2697 -2.6685 1.3999 29 6 6.3820 -3.5120 0.1282 30 1 -0.4850 0.8400 -0.0004 31 1 3.8647 -0.3619 0.0007 32 1 3.8493 -3.0422 -0.8891 33 1 3.8486 -3.0424 0.8909 34 1 5.7818 -2.1588 -2.1455 35 1 5.4472 -0.5730 -1.4102 36 1 7.7394 -0.5543 -0.4388 37 1 7.7823 -0.6793 -2.2142 38 1 9.3564 -2.2813 -1.0710 39 1 8.1368 -3.1021 -2.0767 40 1 10.6331 -5.5476 0.4612 41 1 11.9460 -4.3914 -0.1221 42 1 11.9305 -2.5633 4.3333 43 1 14.2501 -1.1992 4.0997 44 1 15.0585 -1.4782 1.6229 45 1 6.1821 -3.9588 1.1020 46 1 6.0660 -4.1942 -0.6610 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752807594.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:49 Heat of formation + Delta-G solvation = 18.948886 kcal Electronic energy + Delta-G solvation = -26253.389827 eV Core-core repulsion = 22531.865881 eV Total energy + Delta-G solvation = -3721.523946 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.92203 -40.53767 -38.27552 -36.61399 -35.16047 -33.32223 -32.81884 -31.81676 -30.52713 -29.81228 -26.43420 -25.78517 -23.85418 -23.50917 -22.53829 -22.01639 -21.67130 -20.48730 -20.02068 -18.96866 -18.15779 -17.62998 -17.11331 -16.42545 -16.05466 -15.56773 -15.01482 -14.90280 -14.52009 -14.30073 -14.15761 -13.88348 -13.62463 -13.22510 -13.13669 -12.94653 -12.90661 -12.73115 -12.68239 -12.30330 -12.22877 -12.06638 -11.42300 -11.15565 -11.11974 -10.95464 -10.90314 -10.72657 -10.49036 -10.34665 -10.22035 -10.08678 -9.85900 -9.57931 -8.89842 -8.73129 -8.67288 -7.22301 -5.76229 -3.11546 1.29381 2.18046 2.38528 2.55560 2.83683 3.36615 3.39076 3.44656 3.49544 4.01060 4.23468 4.31036 4.52720 4.59110 4.61585 4.71413 4.76815 4.86581 4.90018 4.95548 4.99636 5.22020 5.24773 5.36344 5.44413 5.46885 5.51293 5.54162 5.58502 5.67817 5.69418 5.73197 5.76366 5.84123 5.87322 5.95970 6.05964 6.15616 6.32420 6.40738 6.44986 6.68212 6.77318 6.79457 7.26562 8.00002 8.02299 8.42902 9.21856 9.94179 10.14165 11.42306 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020116 B = 0.002510 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.574934 B =11154.178179 C =11603.743576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.754 5.754 10 C 0.164 3.836 11 C -0.111 4.111 12 H 0.073 0.927 13 C -0.113 4.113 14 C -0.138 4.138 15 C 0.107 3.893 16 N -0.603 5.603 17 C 0.545 3.455 18 O -0.540 6.540 19 C -0.176 4.176 20 H 0.128 0.872 21 C -0.136 4.136 22 C -0.048 4.048 23 H 0.148 0.852 24 C 0.016 3.984 25 C -0.199 4.199 26 C -0.212 4.212 27 C -0.043 4.043 28 O -0.176 6.176 29 C 0.119 3.881 30 H 0.259 0.741 31 H 0.360 0.640 32 H 0.030 0.970 33 H 0.029 0.971 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.150 0.850 43 H 0.149 0.851 44 H 0.203 0.797 45 H 0.094 0.906 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.024 -6.267 -0.756 31.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.372 4.372 8 H 0.108 0.892 9 N -0.400 5.400 10 C 0.037 3.963 11 C -0.131 4.131 12 H 0.091 0.909 13 C -0.151 4.151 14 C -0.176 4.176 15 C -0.016 4.016 16 N -0.335 5.335 17 C 0.333 3.667 18 O -0.417 6.417 19 C -0.197 4.197 20 H 0.146 0.854 21 C -0.173 4.173 22 C -0.067 4.067 23 H 0.166 0.834 24 C -0.033 4.033 25 C -0.218 4.218 26 C -0.231 4.231 27 C -0.110 4.110 28 O -0.073 6.073 29 C -0.003 4.003 30 H 0.069 0.931 31 H 0.193 0.807 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.168 0.832 43 H 0.167 0.833 44 H 0.220 0.780 45 H 0.113 0.887 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 30.562 -6.767 -0.547 31.307 hybrid contribution 0.578 1.664 0.176 1.770 sum 31.140 -5.103 -0.371 31.558 Atomic orbital electron populations 1.69698 1.05075 1.25786 1.57703 1.24671 0.95239 0.97164 1.02155 0.86558 0.79250 0.85080 0.77729 1.21068 1.21706 1.20395 1.19068 0.80620 0.94757 1.42789 0.89181 1.42695 1.04001 1.02144 1.91165 1.20563 0.87475 0.89462 0.98842 1.21733 0.96595 0.96318 0.98444 0.90852 1.21554 0.94295 1.01720 0.97523 1.21971 0.96513 0.96591 1.02507 1.21824 0.98759 0.93105 0.87931 1.48011 1.07717 1.55585 1.22172 1.19453 0.86532 0.78694 0.82044 1.90704 1.79107 1.41448 1.30488 1.22423 0.90514 1.01473 1.05253 0.85376 1.23084 1.00334 0.96322 0.97586 1.20493 0.91619 0.99597 0.94952 0.83403 1.21333 0.90937 1.01967 0.89111 1.21597 0.99086 1.02543 0.98598 1.21869 0.98197 1.05305 0.97738 1.24029 0.95866 0.98516 0.92626 1.83966 1.29167 1.54387 1.39755 1.21659 0.77864 0.97082 1.03679 0.93071 0.80659 0.95246 0.95308 0.91522 0.90938 0.91594 0.90671 0.89885 0.90983 0.87142 0.87071 0.83227 0.83335 0.78011 0.88742 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.61 13.97 55.49 0.78 -28.84 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.88 22.23 27.74 -169.99 -4.71 17.52 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 7 C -0.24 -6.93 10.47 -15.06 -0.16 -7.09 16 8 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 9 N -0.75 -17.96 5.12 -59.91 -0.31 -18.27 16 10 C 0.16 3.15 5.65 -4.04 -0.02 3.13 16 11 C -0.11 -1.69 2.37 -90.50 -0.21 -1.91 16 12 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 13 C -0.11 -1.52 5.06 -26.69 -0.13 -1.66 16 14 C -0.14 -1.42 6.08 -26.61 -0.16 -1.58 16 15 C 0.11 0.96 6.35 -3.72 -0.02 0.94 16 16 N -0.60 -7.10 2.97 -172.77 -0.51 -7.62 16 17 C 0.55 6.86 7.48 -10.99 -0.08 6.78 16 18 O -0.54 -8.67 15.67 5.56 0.09 -8.58 16 19 C -0.18 -1.65 4.83 -91.77 -0.44 -2.09 16 20 H 0.13 1.06 6.56 -51.93 -0.34 0.72 16 21 C -0.14 -1.04 9.87 -26.73 -0.26 -1.30 16 22 C -0.05 -0.45 5.75 -91.77 -0.53 -0.98 16 23 H 0.15 1.46 7.67 -51.93 -0.40 1.06 16 24 C 0.02 0.16 6.80 -35.63 -0.24 -0.08 16 25 C -0.20 -1.88 10.81 -39.70 -0.43 -2.31 16 26 C -0.21 -1.69 10.91 -39.70 -0.43 -2.12 16 27 C -0.04 -0.31 12.09 29.42 0.36 0.05 16 28 O -0.18 -1.62 10.36 5.68 0.06 -1.56 16 29 C 0.12 1.60 5.72 -3.70 -0.02 1.58 16 30 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 31 H 0.36 8.37 4.72 -40.82 -0.19 8.18 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.12 7.16 -51.93 -0.37 0.75 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.59 5.51 -51.93 -0.29 0.30 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.11 0.71 7.96 -51.93 -0.41 0.30 16 42 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.20 0.68 8.06 -52.49 -0.42 0.25 16 45 H 0.09 1.41 7.00 -51.93 -0.36 1.05 16 46 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 372.71 15.07 5.62 5.62 Total: -1.00 -34.58 372.71 -8.93 -43.51 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -7.03 Total: 6.86 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -2.90 Total: -8.64 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.05 Total: -54.73 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.15 Total: -10.14 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.52 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.58 -8.93 -43.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752807594.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.461 kcal (2) G-P(sol) polarization free energy of solvation -34.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds