Wall clock time and date at job start Tue Mar 31 2020 12:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38259 * 119.99956 * 2 1 4 4 C 1.38207 * 119.99947 * 179.97438 * 3 2 1 5 5 C 1.38256 * 120.00183 * 359.74654 * 4 3 2 6 6 C 1.38210 * 119.99803 * 0.50401 * 5 4 3 7 7 C 1.50700 * 120.00269 * 179.76704 * 6 5 4 8 8 C 1.50696 * 109.47245 * 269.73001 * 7 6 5 9 9 O 1.21281 * 120.00313 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99832 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99775 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47082 * 179.72739 * 11 10 8 13 13 H 1.08995 * 109.68114 * 59.26086 * 12 11 10 14 14 C 1.53297 * 109.68155 * 179.78145 * 12 11 10 15 15 O 1.42957 * 109.22074 * 172.02246 * 14 12 11 16 16 C 1.42964 * 114.17007 * 297.41884 * 15 14 12 17 17 C 1.53291 * 109.22276 * 62.58176 * 16 15 14 18 18 N 1.47153 * 109.68004 * 298.70453 * 12 11 10 19 19 C 1.36937 * 120.98244 * 9.72298 * 18 12 11 20 20 H 1.08003 * 120.00255 * 328.98547 * 19 18 12 21 21 C 1.38814 * 120.00143 * 148.98057 * 19 18 12 22 22 N 1.31621 * 120.00083 * 349.12592 * 21 19 18 23 23 Si 1.86795 * 120.00174 * 169.12119 * 21 19 18 24 24 H 1.48499 * 109.47246 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47284 * 120.00241 * 23 21 19 26 26 H 1.48506 * 109.47408 * 240.00425 * 23 21 19 27 27 C 1.38218 * 120.00060 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47331 * 270.01880 * 1 2 3 29 29 H 1.08998 * 109.47344 * 30.02884 * 1 2 3 30 30 H 1.09010 * 109.47200 * 150.02178 * 1 2 3 31 31 H 1.08000 * 119.99765 * 359.97438 * 3 2 1 32 32 H 1.08004 * 119.99916 * 180.02562 * 4 3 2 33 33 H 1.08001 * 120.00451 * 180.27765 * 5 4 3 34 34 H 1.09005 * 109.47496 * 149.72355 * 7 6 5 35 35 H 1.09005 * 109.47223 * 29.73078 * 7 6 5 36 36 H 0.96994 * 120.00262 * 359.72442 * 10 8 7 37 37 H 1.09002 * 109.46910 * 299.72759 * 11 10 8 38 38 H 1.09002 * 109.46961 * 59.72842 * 11 10 8 39 39 H 1.08997 * 109.51510 * 291.95114 * 14 12 11 40 40 H 1.09005 * 109.51083 * 52.05117 * 14 12 11 41 41 H 1.09000 * 109.51095 * 182.50452 * 16 15 14 42 42 H 1.09000 * 109.51014 * 302.65478 * 16 15 14 43 43 H 1.09005 * 109.68368 * 67.41701 * 17 16 15 44 44 H 1.08997 * 109.68392 * 187.94099 * 17 16 15 45 45 H 0.96998 * 120.00463 * 179.97438 * 22 21 19 46 46 H 1.08000 * 119.99828 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0064 6 6 3.5807 -1.1969 0.0011 7 6 4.3341 -2.5020 0.0022 8 6 4.5859 -2.9379 -1.4182 9 8 4.1926 -2.2557 -2.3407 10 7 5.2490 -4.0854 -1.6635 11 6 5.4932 -4.5094 -3.0444 12 6 6.2647 -5.8306 -3.0433 13 1 5.6889 -6.5915 -2.5166 14 6 6.5182 -6.2816 -4.4863 15 8 7.3947 -7.4110 -4.4793 16 6 8.6904 -7.1430 -3.9377 17 6 8.5482 -6.7361 -2.4667 18 7 7.5651 -5.6446 -2.3801 19 6 7.8520 -4.4896 -1.7026 20 1 7.4183 -3.5537 -2.0227 21 6 8.7002 -4.5217 -0.6042 22 7 9.0579 -5.6759 -0.0824 23 14 9.3341 -2.9268 0.1333 24 1 8.7881 -1.7766 -0.6310 25 1 8.9003 -2.8298 1.5502 26 1 10.8176 -2.9061 0.0673 27 6 2.1981 -1.1970 0.0005 28 1 -0.3634 0.0003 1.0277 29 1 -0.3634 0.8897 -0.5143 30 1 -0.3634 -0.8903 -0.5135 31 1 1.6582 2.1326 -0.0004 32 1 4.1204 2.1327 0.0010 33 1 5.3517 0.0000 0.0113 34 1 3.7449 -3.2614 0.5163 35 1 5.2864 -2.3714 0.5164 36 1 5.5676 -4.6286 -0.9259 37 1 4.5406 -4.6453 -3.5566 38 1 6.0778 -3.7477 -3.5604 39 1 5.5726 -6.5575 -4.9530 40 1 6.9770 -5.4672 -5.0471 41 1 9.3074 -8.0387 -4.0097 42 1 9.1579 -6.3321 -4.4963 43 1 8.2027 -7.5885 -1.8817 44 1 9.5107 -6.3951 -2.0854 45 1 9.6509 -5.6984 0.6849 46 1 1.6581 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754970955.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:24 Heat of formation + Delta-G solvation = -37.004775 kcal Electronic energy + Delta-G solvation = -27154.476695 eV Core-core repulsion = 23430.526417 eV Total energy + Delta-G solvation = -3723.950278 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.79282 -38.88738 -38.15217 -35.33606 -33.59482 -33.34283 -31.99025 -31.48022 -30.45950 -28.02008 -27.16468 -26.78419 -25.09477 -23.48114 -22.18055 -21.74736 -20.84065 -19.81549 -19.43740 -17.09807 -16.41680 -16.18813 -15.96933 -15.72353 -15.45759 -15.06232 -14.64109 -14.44991 -14.33416 -13.92908 -13.82885 -13.72860 -13.30323 -13.08126 -12.89590 -12.83426 -12.64191 -12.40040 -12.03528 -11.79119 -11.64573 -11.46799 -11.09078 -10.96336 -10.93133 -10.87575 -10.74486 -10.42933 -10.26968 -10.07730 -9.68840 -9.45519 -9.00642 -8.70491 -8.65428 -8.45559 -8.27169 -6.76600 -5.94075 -3.43784 1.45722 1.51601 3.18935 3.23408 3.33908 3.35816 3.67040 4.06093 4.31102 4.51703 4.77515 4.85557 4.97524 5.11641 5.20498 5.23415 5.30313 5.41601 5.44838 5.52677 5.58948 5.62449 5.71436 5.73851 5.76103 5.78915 5.84804 6.00505 6.08091 6.13894 6.17421 6.21316 6.23208 6.31171 6.50422 6.56956 6.64346 6.73983 6.75727 7.04754 7.11525 7.13030 7.46123 7.67545 7.84553 8.21324 8.26473 8.84385 9.02355 9.62686 10.21953 11.12425 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015267 B = 0.003788 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.622483 B = 7390.701605 C = 8743.934235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.091 4.091 3 C -0.127 4.127 4 C -0.116 4.116 5 C -0.111 4.111 6 C -0.050 4.050 7 C -0.107 4.107 8 C 0.511 3.489 9 O -0.555 6.555 10 N -0.696 5.696 11 C 0.137 3.863 12 C 0.125 3.875 13 H 0.041 0.959 14 C 0.056 3.944 15 O -0.392 6.392 16 C 0.035 3.965 17 C 0.144 3.856 18 N -0.592 5.592 19 C -0.254 4.254 20 H 0.074 0.926 21 C 0.009 3.991 22 N -0.900 5.900 23 Si 0.893 3.107 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.288 1.288 27 C -0.107 4.107 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.415 0.585 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.047 0.953 41 H 0.080 0.920 42 H 0.040 0.960 43 H 0.029 0.971 44 H 0.092 0.908 45 H 0.255 0.745 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.763 5.827 0.527 12.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.091 4.091 3 C -0.145 4.145 4 C -0.134 4.134 5 C -0.129 4.129 6 C -0.050 4.050 7 C -0.147 4.147 8 C 0.297 3.703 9 O -0.434 6.434 10 N -0.348 5.348 11 C 0.012 3.988 12 C 0.018 3.982 13 H 0.059 0.941 14 C -0.023 4.023 15 O -0.311 6.311 16 C -0.043 4.043 17 C 0.018 3.982 18 N -0.317 5.317 19 C -0.383 4.383 20 H 0.092 0.908 21 C -0.190 4.190 22 N -0.544 5.544 23 Si 0.722 3.278 24 H -0.201 1.201 25 H -0.214 1.214 26 H -0.214 1.214 27 C -0.125 4.125 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.252 0.748 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.059 0.941 43 H 0.047 0.953 44 H 0.110 0.890 45 H 0.065 0.935 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.978 6.083 -0.050 12.551 hybrid contribution 0.923 0.750 0.932 1.511 sum -10.056 6.833 0.882 12.190 Atomic orbital electron populations 1.20759 0.91457 1.02622 1.01970 1.19825 0.95817 0.93168 1.00253 1.20938 0.94239 0.97226 1.02099 1.21046 0.94258 0.97781 1.00338 1.21028 0.99922 0.92045 0.99884 1.19325 0.93422 0.93883 0.98376 1.20699 1.02335 0.95734 0.95917 1.20299 0.78211 0.81178 0.90654 1.90663 1.52478 1.54159 1.46134 1.45995 1.55476 1.23697 1.09635 1.21139 0.98008 0.96253 0.83362 1.21426 0.88953 0.94419 0.93383 0.94130 1.22866 0.93553 0.89158 0.96760 1.87800 1.24898 1.35009 1.83403 1.23354 0.83720 0.99693 0.97560 1.21414 0.95921 0.90508 0.90313 1.44105 1.09155 1.16978 1.61490 1.19288 1.26856 0.86193 1.05973 0.90813 1.25137 1.01293 0.96330 0.96284 1.69985 1.37354 1.23145 1.23873 0.86359 0.78968 0.83471 0.78960 1.20083 1.21390 1.21415 1.20832 0.93396 0.97478 1.00760 0.91442 0.91775 0.91639 0.86521 0.86286 0.86218 0.88254 0.87813 0.74777 0.92458 0.91594 0.89931 0.93519 0.90233 0.94126 0.95274 0.88952 0.93492 0.86382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.01 36.01 0.36 -0.68 16 2 C -0.09 -1.13 5.88 -104.62 -0.62 -1.75 16 3 C -0.13 -1.55 9.70 -39.59 -0.38 -1.94 16 4 C -0.12 -1.52 10.05 -39.59 -0.40 -1.92 16 5 C -0.11 -1.65 9.70 -39.59 -0.38 -2.03 16 6 C -0.05 -0.75 4.37 -104.63 -0.46 -1.21 16 7 C -0.11 -1.60 5.83 -29.04 -0.17 -1.77 16 8 C 0.51 9.30 7.82 -10.98 -0.09 9.21 16 9 O -0.56 -11.80 16.03 5.56 0.09 -11.71 16 10 N -0.70 -12.76 3.80 -60.29 -0.23 -12.99 16 11 C 0.14 2.51 4.44 -4.04 -0.02 2.50 16 12 C 0.13 2.42 3.20 -67.42 -0.22 2.20 16 13 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 14 C 0.06 0.98 6.29 37.31 0.23 1.22 16 15 O -0.39 -7.59 10.74 -35.23 -0.38 -7.97 16 16 C 0.03 0.66 6.98 37.31 0.26 0.92 16 17 C 0.14 3.23 5.38 -3.53 -0.02 3.21 16 18 N -0.59 -13.41 3.03 -164.30 -0.50 -13.90 16 19 C -0.25 -6.15 7.11 -15.06 -0.11 -6.26 16 20 H 0.07 1.83 5.81 -52.48 -0.30 1.53 16 21 C 0.01 0.23 5.06 -17.43 -0.09 0.14 16 22 N -0.90 -23.76 11.13 55.49 0.62 -23.14 16 23 Si 0.89 20.24 29.57 -169.99 -5.03 15.21 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 27 C -0.11 -1.47 9.36 -39.58 -0.37 -1.84 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 30 H 0.06 0.58 8.09 -51.92 -0.42 0.16 16 31 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 33 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.10 1.23 8.09 -51.93 -0.42 0.81 16 35 H 0.10 1.52 8.08 -51.93 -0.42 1.10 16 36 H 0.41 7.83 7.38 -40.82 -0.30 7.53 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 1.33 7.53 -51.93 -0.39 0.94 16 39 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 2.28 6.32 -51.93 -0.33 1.95 16 45 H 0.25 6.60 8.31 -40.82 -0.34 6.27 16 46 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 371.86 15.07 5.60 5.60 Total: -1.00 -29.54 371.86 -9.49 -39.03 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -7.21 Total: 9.87 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -2.46 Total: 0.00 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.11 Total: -50.03 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.29 Total: -19.68 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.03 Total: 15.21 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.54 -9.49 -39.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754970955.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.021 kcal (2) G-P(sol) polarization free energy of solvation -29.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds